View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14294_low_13 (Length: 280)
Name: NF14294_low_13
Description: NF14294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14294_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 21 - 264
Target Start/End: Complemental strand, 19811126 - 19810883
Alignment:
| Q |
21 |
agatctggcaattgcttccattgaacagaattcggagcttgcaagtactcctttatacattgctatggagcagattatagctcatgccacgcctgccact |
120 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
19811126 |
agatctggcaattgcttccattgaacagaattcgaagcttgcaggtactcctttatacattgctatggagcagattatagctcattccacgcctgccact |
19811027 |
T |
|
| Q |
121 |
cagtaccagtcgttgaggcgtaagcggagaaatgtcaggcaatatagttaacaaggcacctagtgatgtctgtattttgtttttagttttagaaatttag |
220 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19811026 |
cagtaccagtcgttgaggcgtaagcggagaaatgtcaggcaatatagttaacaaggcacctagtgatgtctgtattttgtttttagttttagaaatttag |
19810927 |
T |
|
| Q |
221 |
actttggatatgagcctatgttgtcgggcattgtactttgttat |
264 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
19810926 |
actttggatatgaacctatgttgtcgggcattgtactttgttat |
19810883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 25 - 264
Target Start/End: Complemental strand, 32687409 - 32687172
Alignment:
| Q |
25 |
ctggcaattgcttccattgaacagaattcggagcttgcaagtactcctttatacattgctatggagcagattatagctcatgccacgcctgccactcagt |
124 |
Q |
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|
||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32687409 |
ctggcaattacttccattgaacagaattcagagcttgcaggtactcctttatacattgctatggagcagattatagctcatgccacgcctgccactcagt |
32687310 |
T |
|
| Q |
125 |
accagtcgttgaggcgtaagcggagaaatgtcaggcaatatagttaacaaggcacctagtgatgtctgtattttgtttttagttttagaaatttagactt |
224 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32687309 |
accagtcgttgaggcgtaagcggagaaatgtcaggcagtataattaacagggcactgagtgatgtc--tattttgtttttagttttagaaatttagactt |
32687212 |
T |
|
| Q |
225 |
tggatatgagcctatgttgtcgggcattgtactttgttat |
264 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||| |
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| T |
32687211 |
tggatatgaacctatgttgtcgggcattgtactttgttat |
32687172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 21 - 264
Target Start/End: Complemental strand, 1199601 - 1199358
Alignment:
| Q |
21 |
agatctggcaattgcttccattgaacagaattcggagcttgcaagtactcctttatacattgctatggagcagattatagctcatgccacgcctgccact |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
1199601 |
agatctggcaattgcttccattgaacagaattcgaagcttgcaggtactcctttatacattgttatggagcagattatagctcatgccacgcctgccact |
1199502 |
T |
|
| Q |
121 |
cagtaccagtcgttgaggcgtaagcggagaaatgtcaggcaatatagttaacaaggcacctagtgatgtctgtattttgtttttagttttagaaatttag |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1199501 |
cagtaccagtcgttgaggcgtaagcggagaaatgtcaggcaatatagttaacaaggcacctagtgatgtctgtattttgtttttagttttagaaatttag |
1199402 |
T |
|
| Q |
221 |
actttggatatgagcctatgttgtcgggcattgtactttgttat |
264 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
1199401 |
actttggatatgaacctatgttgtcgggcattgtactttgttat |
1199358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 25748978 - 25749019
Alignment:
| Q |
223 |
tttggatatgagcctatgttgtcgggcattgtactttgttat |
264 |
Q |
| |
|
||||||||||| |||||||||| || |||||||||||||||| |
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|
| T |
25748978 |
tttggatatgaacctatgttgttggccattgtactttgttat |
25749019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 36 - 265
Target Start/End: Original strand, 25207728 - 25207960
Alignment:
| Q |
36 |
ttccattgaacagaattcggagcttgcaagtactcctttatacattgctatggagcaga--ttatagctcatgccacgcctgccactcagtaccagtcgt |
133 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||| ||||||||| ||||||| | |||||||| |||||||||| ||||||||||| ||||||| |
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|
| T |
25207728 |
ttccattgaacaaaatcaggagcttgcaagtactcctttgtacattgctctggagcataaattatagcttatgccacgccggccactcagtatcagtcgt |
25207827 |
T |
|
| Q |
134 |
tgaggcgtaagcggagaaatgtcaggcaatatagttaacaaggcacctagtgatgtctgtattttg-tttttagttttagaaatttagactttggatatg |
232 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||||| |
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| T |
25207828 |
tgaagcgtaagcggagaaatgtcaggcaatatagttcacaagtcaccgagtgatgtctgcattttgtttttttgttttagaaatttagactttggatatg |
25207927 |
T |
|
| Q |
233 |
agcctatgttgtcgggcattgtactttgttatt |
265 |
Q |
| |
|
| |||||||||| ||||||||||||||||||| |
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|
| T |
25207928 |
aacctatgttgttaggcattgtactttgttatt |
25207960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 35 - 264
Target Start/End: Original strand, 26941889 - 26942122
Alignment:
| Q |
35 |
cttccattgaacagaattcggagcttgcaagtactcctttatacattgctatggagcagattatagctcatgccacgcctgccactcagtaccagtcgtt |
134 |
Q |
| |
|
||||| |||||||||||| || |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26941889 |
cttccgttgaacagaattaagaacttgcaggtactcctttatacattgctatggagcggattatagctcatgccacgcctaccactcagtaccagtcgtt |
26941988 |
T |
|
| Q |
135 |
gaggcgtaagcggagaaatgtcaggcaatatagttaacaaggcacctagtgatgtctgtatttt-------gtttttagttttagaaatttagactttgg |
227 |
Q |
| |
|
|| |||||||||||||||||||||||| || | ||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |
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|
| T |
26941989 |
gatgcgtaagcggagaaatgtcaggcagta----tcacagggcactgagtgatgtctgcattttgtttttagtttttagttttagaaatttagactttgg |
26942084 |
T |
|
| Q |
228 |
atatgagcctatgttg-tcgggcattgtactttgttat |
264 |
Q |
| |
|
|||||| ||||| ||| | ||||||| ||||||||||| |
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|
| T |
26942085 |
atatgaacctatattgttggggcattctactttgttat |
26942122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 25 - 211
Target Start/End: Complemental strand, 18295637 - 18295454
Alignment:
| Q |
25 |
ctggcaattgcttccattgaacagaattcggagcttgcaagtactcctttatacattgctatggagcagattatagctcatgccacgcctgccactcagt |
124 |
Q |
| |
|
||||||||| |||||||||||||||| |||| ||| |||||||||||||| |||||| | |||||| ||||||| ||||||||||| ||||||| |
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|
| T |
18295637 |
ctggcaattaattccattgaacagaatcaggagtacgcagacactcctttatacatggctatgaaacagattgtagctcaggccacgcctgcgactcagt |
18295538 |
T |
|
| Q |
125 |
accagtcgttgaggcgtaagcggagaaatgtcaggcaatatagttaacaaggcacctagtgatgtctgtattttgtttttagtttta |
211 |
Q |
| |
|
|| |||| |||||||||||||||||||| |||||||||||||||| ||| || | |||||||||||||| ||||||| ||||||| |
|
|
| T |
18295537 |
acaagtcattgaggcgtaagcggagaaaggtcaggcaatatagttcaca--gc-ctgagtgatgtctgtatattgttttgagtttta |
18295454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 69 - 165
Target Start/End: Original strand, 322196 - 322292
Alignment:
| Q |
69 |
tcctttatacattgctatggagcagattatagctcatgccacgcctgccactcagtaccagtcgttgaggcgtaagcggagaaatgtcaggcaatat |
165 |
Q |
| |
|
|||||||||||| |||||||| |||||| ||||||| |||| | |||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
322196 |
tcctttatacatggctatggaacagattgtagctcaggccatgtctgcaactcagtaccagtcattgaggcgtaagcggagaaatgtcaggcaatat |
322292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 157
Target Start/End: Complemental strand, 14601251 - 14601161
Alignment:
| Q |
67 |
actcctttatacattgctatggagcagattatagctcatgccacgcctgccactcagtaccagtcgttgaggcgtaagcggagaaatgtca |
157 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||| ||||| | ||||||||||||||||||| || || |||||| ||||||| || ||||||| |
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|
| T |
14601251 |
actcctttgtacatcgctatggagcatattgtagctgagaccacgcctgccactcagtatcattcattgaggtgtaagcgaaggaatgtca |
14601161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 157
Target Start/End: Complemental strand, 16021281 - 16021191
Alignment:
| Q |
67 |
actcctttatacattgctatggagcagattatagctcatgccacgcctgccactcagtaccagtcgttgaggcgtaagcggagaaatgtca |
157 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||| ||||| | ||||||||||||||||||| || || |||||| ||||||| || ||||||| |
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|
| T |
16021281 |
actcctttgtacatcgctatggagcatattgtagctgagaccacgcctgccactcagtatcattcattgaggtgtaagcgaaggaatgtca |
16021191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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