View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14294_low_14 (Length: 273)

Name: NF14294_low_14

Description: NF14294

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14294_low_14

[»] chr1 (6 HSPs)

Alignment Details

Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 6)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 178; E-Value: 4e-96

Query Start/End: Original strand, 5 - 273

Target Start/End: Original strand, 28635225 - 28635494

Alignment:

Q	5	agagataattaaacaacaagtcactgaaatatataaggagaacggaaacacagccatatcatgggttcgaaatctcttccatgattgcgtagttaatgtg	104	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\| \|\|\|
T	28635225	agagataatcaaacaacaagtcactgaactatataaccagcatggaaacacagccatttcctgggttcgaaatctcttccatgattgcacagtcaacgtg	28635324	T

Q	105	agtataaatatacatagattacataattaacacaacaaagttatatcgttt-aaattaatcggcaactaataatgatgcatatgtatgcagtcatgtgat	203	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28635325	agtataaatatatatagataacataattaacacaacaaagttatatcgtttcaaattaatcggcaactaataatgatgtatatgtatgcagtcatgtgat	28635424	T

Q	204	gcatccctgcttttaaccacggtgcgtggtgtgctatcggagcagaaatcagtgagaagttttgggatga	273	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28635425	gcatccctgcttttagcaacggtgcatggtgtggtatcggagcagacatcggtgagaagttttgggatga	28635494	T

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Target: chr1; HSP #2

Raw Score: 44; E-Value: 4e-16

Query Start/End: Original strand, 5 - 116

Target Start/End: Original strand, 28604847 - 28604958

Alignment:

Q	5	agagataattaaacaacaagtcactgaaatatataaggagaacggaaacacagccatatcatgggttcgaaatctcttccatgattgcgtagttaatgtg	104	Q
		\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\| \| \|\|\|\|\| \|\| \| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\| \|\|\|
T	28604847	agagatcatcaagcaacaagtcaatgaattgtataacaagcatggaaacacagcaatttcgtgggttagaaatctcttccatgattgcatagtcaaggtg	28604946	T

Q	105	agtataaatata	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|
T	28604947	agtataaatata	28604958	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3

Raw Score: 39; E-Value: 0.0000000000004

Query Start/End: Original strand, 183 - 273

Target Start/End: Original strand, 28654685 - 28654775

Alignment:

Q	183	atatgtatgcagtcatgtgatgcatccctgcttttaaccacggtgcgtggtgtgctatcggagcagaaatcagtgagaagttttgggatga	273	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\| \| \|\|\| \|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28654685	atatatatgcagtcatgcgatgcatcctttcttttagcaacgtggcgcggtgtggtatcggagcagacatcggtaagaagttttgggatga	28654775	T

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Target: chr1; HSP #4

Raw Score: 36; E-Value: 0.00000000002

Query Start/End: Original strand, 190 - 273

Target Start/End: Original strand, 28605243 - 28605326

Alignment:

Q	190	tgcagtcatgtgatgcatccctgcttttaaccacggtgcgtggtgtgctatcggagcagaaatcagtgagaagttttgggatga	273	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \| \| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28605243	tgcagtcatgtgatgcatccctgcttttggagacggtgcacggcgtggtatcggagcagacagcggagagaagttttgggatga	28605326	T

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Target: chr1; HSP #5

Raw Score: 36; E-Value: 0.00000000002

Query Start/End: Original strand, 5 - 116

Target Start/End: Original strand, 28662915 - 28663026

Alignment:

Q	5	agagataattaaacaacaagtcactgaaatatataaggagaacggaaacacagccatatcatgggttcgaaatctcttccatgattgcgtagttaatgtg	104	Q
		\|\|\|\|\|\| \|\| \|\| \|\|\| \|\|\|\|\|\| \|\|\|\| \| \|\|\|\|\| \|\|\| \| \|\|\|\|\|\|\|\|\|\|\| \| \|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \| \|\|\|
T	28662915	agagatcatcaagcaaaaagtcattgaactgtataacgagcatggaaacacagcggtttcgtgggttagaaatctcttccatgattgcatagtcgaggtg	28663014	T

Q	105	agtataaatata	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|
T	28663015	agtataaatata	28663026	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6

Raw Score: 33; E-Value: 0.000000002

Query Start/End: Original strand, 5 - 107

Target Start/End: Original strand, 28654521 - 28654620

Alignment:

Q	5	agagataattaaacaacaagtcactgaaatatataaggagaacggaaacacagccatatcatgggttcgaaatctcttccatgattgcgtagttaatgtg	104	Q
		\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\| \|\|\|\|\|\|\|\|\| \|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\| \|\|\|\|\|\|
T	28654521	agagataatcaagcagcaagtcactgaactatataatcaa---ggaagcacagccatttcgtggcttcgaaatctcttccatgattgcatggtcaatgtg	28654617	T

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