View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14294_low_18 (Length: 247)

Name: NF14294_low_18
Description: NF14294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14294_low_18
NF14294_low_18
[»] chr2 (3 HSPs)
chr2 (69-213)||(27867430-27867577)
chr2 (120-191)||(9501493-9501565)
chr2 (65-196)||(28279375-28279508)
[»] chr8 (1 HSPs)
chr8 (54-222)||(16053372-16053543)
[»] chr6 (1 HSPs)
chr6 (66-226)||(18388513-18388677)
[»] chr4 (3 HSPs)
chr4 (69-197)||(12023765-12023889)
chr4 (69-186)||(12032170-12032283)
chr4 (130-227)||(15788398-15788498)
[»] chr3 (3 HSPs)
chr3 (121-168)||(8403427-8403474)
chr3 (82-191)||(11520034-11520146)
chr3 (120-222)||(14426582-14426687)
[»] chr5 (3 HSPs)
chr5 (82-160)||(17026524-17026602)
chr5 (110-160)||(23177119-23177169)
chr5 (65-189)||(24840659-24840785)
[»] chr7 (2 HSPs)
chr7 (69-185)||(25705391-25705506)
chr7 (69-145)||(20146439-20146515)


Alignment Details
Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 69 - 213
Target Start/End: Complemental strand, 27867577 - 27867430
Alignment:
Q  69 gtgttccatgtgaattgttatttttgctcaaaattttggttgttctctatagactatcggttatattgtcatacacacgagatatttgttttggtaccta 168  Q
    |||||||||||| |||| ||||||| ||| ||||||  || ||||||||  ||||||||||| |||| |||||||||||||| | ||||||||||||||     
T  27867577 gtgttccatgtggattgctatttttcctcgaaatttatgtcgttctctacggactatcggttttattatcatacacacgagacacttgttttggtacctc 27867478  T
Q  169 tagcctttttcaagccaccctgat---ttattgctatatcctttgtga 213  Q
     |||||||||||||| ||| ||||   |||||| ||||||||||||||    
T  27867477 aagcctttttcaagctaccttgatttattattgttatatcctttgtga 27867430  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 9501493 - 9501565
Alignment:
Q  120 gactatcggttatattgtcatacacacgagatatttg-ttttggtacctatagcctttttcaagccaccctga 191  Q
    ||||||| ||| ||||||||||||||||||| ||||| |||||||| ||| ||||||||||||||||||||||    
T  9501493 gactatcagttgtattgtcatacacacgagacatttgtttttggtaactagagcctttttcaagccaccctga 9501565  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 196
Target Start/End: Complemental strand, 28279508 - 28279375
Alignment:
Q  65 atgagtgttccatgt-gaattgttatttttgctcaaaattttggttgttctctatagactatcggttatattgtcatacacacgagatatttg-ttttgg 162  Q
    ||||||||||||||| | |||  || |||||||| |||||| ||  ||||||||| ||||||||||| |||||||||||||||||| |||||| | |||     
T  28279508 atgagtgttccatgttggatttctacttttgctcgaaatttcggaagttctctatggactatcggttgtattgtcatacacacgaggtatttgatattga 28279409  T
Q  163 tacctatagcctttttcaagccaccctgatttat 196  Q
    ||  || ||| |||||||||||| ||||| ||||    
T  28279408 taaatagagcatttttcaagccatcctgaattat 28279375  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 222
Target Start/End: Complemental strand, 16053543 - 16053372
Alignment:
Q  54 ttttttcattcatgagtgttccatgt-gaattgttatttttgctcaaaattttggttgttctctatagactatcggttatattgtcatacacacgag--a 150  Q
    |||||||||| ||||||||||||||| | |||||||||||||||| |||||| ||  ||||||||||||||||| ||||||||||||||||||||||  |    
T  16053543 ttttttcatt-atgagtgttccatgttggattgttatttttgctcgaaatttcggacgttctctatagactatcagttatattgtcatacacacgaggca 16053445  T
Q  151 tatttgttttggtacctatagcctttttcaagccaccctgatttat--tgctatatcctttgtgagaccacttt 222  Q
    | | | |||||||| |||  ||| ||||||||||||||||| ||||  |   ||||||||||||| ||||||||    
T  16053444 tttattttttggtaactagggcc-ttttcaagccaccctgaattatcatcacatatcctttgtgaaaccacttt 16053372  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 66 - 226
Target Start/End: Original strand, 18388513 - 18388677
Alignment:
Q  66 tgagtgttccatgt-gaattgttatttttgctcaaaattttggttgttctctatagactatcggttatattgtcatacacacgagatatttgtttt--gg 162  Q
    ||||||||| |||| | |||| ||||||||||  |||||||||||||||||||   |||||||||| |||||||||| ||||||   |||||||||   |    
T  18388513 tgagtgttcaatgttggattgctatttttgcttgaaattttggttgttctctacgaactatcggttttattgtcatatacacgaagcatttgtttttccg 18388612  T
Q  163 tacctatagcctttttcaagccaccctga--tttattgctatatcctttgtgagaccactttgagc 226  Q
    |||||| ||||||||| ||||||||  ||   |||||| | |||||||||||| ||||||||||||    
T  18388613 tacctagagcctttttgaagccacctagaatattattg-tttatcctttgtgaaaccactttgagc 18388677  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 197
Target Start/End: Complemental strand, 12023889 - 12023765
Alignment:
Q  69 gtgttccatgtgaattgttatttttgctcaaaattttggttgttctctatagactatcggttatattgtcatacacacgagatatttgttttggtaccta 168  Q
    |||||||||||| |||| ||||||| |||    ||| ||||||||||||  |||||||  ||||||| ||||||||| |||| | |||||||||||| |     
T  12023889 gtgttccatgtggattgctatttttcctc----tttaggttgttctctacggactatcaattatattatcatacacatgagacacttgttttggtacttt 12023794  T
Q  169 tagcctttttcaagccaccctgatttatt 197  Q
     ||||||||||||||||||| || |||||    
T  12023793 gagcctttttcaagccacccggaattatt 12023765  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 186
Target Start/End: Original strand, 12032170 - 12032283
Alignment:
Q  69 gtgttccatgtgaattgttatttttgctcaaaattttggttgttctctatagactatcggttatattgtcatacacacgagatatttgttttggtaccta 168  Q
    |||||||||||| |||| ||||||| |||    ||| ||||||||||||  ||||||| |||||||| ||||||||| |||| | |||||||| |||||     
T  12032170 gtgttccatgtggattgatatttttcctc----tttaggttgttctctacggactatcagttatattatcatacacatgagacacttgttttgatacctt 12032265  T
Q  169 tagcctttttcaagccac 186  Q
     || ||||||||||||||    
T  12032266 gagtctttttcaagccac 12032283  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 15788498 - 15788398
Alignment:
Q  130 tatattgtcatacacacgagatatttgttttggtacctatagcctttttcaagccaccctgat---ttattgctatatcctttgtgagaccactttgagc 226  Q
    |||||| |||||||| ||||| | ||||||||||||||  ||| || || |||||||||| ||   |||||| |||||||||||||| |  |||||||||    
T  15788498 tatattatcatacacgcgagacacttgttttggtaccttgagctttatttaagccaccctaatttattattgttatatcctttgtgaaattactttgagc 15788399  T
Q  227 t 227  Q
    |    
T  15788398 t 15788398  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 8403474 - 8403427
Alignment:
Q  121 actatcggttatattgtcatacacacgagatatttgttttggtaccta 168  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  8403474 actatcggttatattgtcatacacacgagaaatttgttttggtaccta 8403427  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 191
Target Start/End: Original strand, 11520034 - 11520146
Alignment:
Q  82 attgttatttttgctcaaaattttggttgttctctatagactatcggttatattgtcatacacacgagatatttg-ttttggtacctatagcc--ttttt 178  Q
    |||| ||||||||||  |||||| |||  |||  || ||||||| |||| ||||||||||||||||||| ||||| |||||||||||| ||||  |||||    
T  11520034 attgctatttttgcttgaaatttcggtcattcgttacagactattggttgtattgtcatacacacgagacatttgtttttggtacctagagccttttttt 11520133  T
Q  179 caagccaccctga 191  Q
    |||||||||||||    
T  11520134 caagccaccctga 11520146  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 14426582 - 14426687
Alignment:
Q  120 gactatcggttatattgtcatacacacgagatatttg-ttttggtacctatagcctttttcaagccaccctgatttat--tgctatatcctttgtgagac 216  Q
    ||||||| |||||||||||||||||| |||  ||||| |||||||| ||| |||||||||||| ||||||||| ||||  |  | |||||||||||| ||    
T  14426582 gactatcagttatattgtcatacacatgaggcatttgtttttggtaactagagcctttttcaatccaccctgaattatcattatttatcctttgtgaaac 14426681  T
Q  217 cacttt 222  Q
    ||||||    
T  14426682 cacttt 14426687  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 17026524 - 17026602
Alignment:
Q  82 attgttatttttgctcaaaattttggttgttctctatagactatcggttatattgtcatacacacgagatatttgtttt 160  Q
    |||| ||||||||||| |||||||||| ||||  || ||||||||| || ||||||||||||||||||| |||||||||    
T  17026524 attgctatttttgctcgaaattttggtcgttcattacagactatcgtttgtattgtcatacacacgagacatttgtttt 17026602  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 23177169 - 23177119
Alignment:
Q  110 gttctctatagactatcggttatattgtcatacacacgagatatttgtttt 160  Q
    ||||||||  ||||||| ||| |||||||||||||||||||||||||||||    
T  23177169 gttctctacggactatcagttgtattgtcatacacacgagatatttgtttt 23177119  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 189
Target Start/End: Original strand, 24840659 - 24840785
Alignment:
Q  65 atgagtgttccatgt-gaattgttatttttgctcaaaattttggttgttctctatagactatcggttatattgtcatacacacgagatatttgttttgg- 162  Q
    ||||||||||||||| | |||| ||||||| | | |||||| |||  |||| ||||||||||| ||| |||| ||||| ||| |||  |||||||||       
T  24840659 atgagtgttccatgttggattgctatttttacacgaaatttcggtcattctttatagactatcagttgtattttcatatacatgaggcatttgtttttta 24840758  T
Q  163 tacctatagcctttttcaagccaccct 189  Q
    || ||| ||||||||||||||||||||    
T  24840759 taactagagcctttttcaagccaccct 24840785  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 185
Target Start/End: Original strand, 25705391 - 25705506
Alignment:
Q  69 gtgttccatgtgaattgttatttttgctcaaaattttggttgttctctatagactatcggttatattgtcatacacacgagatatttgttttggtaccta 168  Q
    |||||| ||||  |||||||||||||||  ||| | |||||||||| || ||||||| |||| |||  |||||||||||||| ||||  ||||||||||     
T  25705391 gtgttctatgttgattgttatttttgctacaaagtgtggttgttctatacagactattggttgtatcatcatacacacgagacattt-ctttggtacctt 25705489  T
Q  169 tagcctttttcaagcca 185  Q
      |||||||| ||||||    
T  25705490 gtgccttttttaagcca 25705506  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 20146439 - 20146515
Alignment:
Q  69 gtgttccatgtgaattgttatttttgctcaaaattttggttgttctctatagactatcggttatattgtcatacaca 145  Q
    |||||||||||| ||||||| ||| |||| ||||| ||||  ||||  || ||||||||||| |||| |||||||||    
T  20146439 gtgttccatgtggattgttagtttagctcgaaattgtggtcattcttcatggactatcggttgtattatcatacaca 20146515  T

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