View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14294_low_19 (Length: 244)
Name: NF14294_low_19
Description: NF14294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14294_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 713722 - 713496
Alignment:
| Q |
1 |
gttgaacacataactctcttatgtttcttcctcaaaccccaattttcattttgtatttataatgttagcaatttcacaccagcaatacaagtataaaaac |
100 |
Q |
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| T |
713722 |
gttgaacacataactctcttatgtttcttcctcaaaccccaattttcattttgtatttataatgttagcaatttcacaccagcaatacaagtataaaaac |
713623 |
T |
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| Q |
101 |
gcaataagtttaagtaaactacactatttaattgatcaaatatccaaaatacctctaatgttataataaattttcaaaatagtcatatataaattcaaat |
200 |
Q |
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| T |
713622 |
gcaataagtttaagtaaattacactatttaattgataaaatatccaaaatacctctaatattataataaattttcaaaatagtcatatatgaattcaaat |
713523 |
T |
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| Q |
201 |
ttcctacgatcatcaattgtacacatt |
227 |
Q |
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| T |
713522 |
ttcctacgatcatcaattgtacacatt |
713496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 713817 - 713775
Alignment:
| Q |
1 |
gttgaacacataactctcttatgtttcttcctcaaaccccaat |
43 |
Q |
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| T |
713817 |
gttgaacacataactctcttatgtttcttcctcaaaccccaat |
713775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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