View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14294_low_3 (Length: 433)

Name: NF14294_low_3
Description: NF14294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14294_low_3
NF14294_low_3
[»] scaffold0111 (1 HSPs)
scaffold0111 (18-252)||(33601-33835)
[»] chr3 (7 HSPs)
chr3 (69-245)||(13508718-13508893)
chr3 (319-420)||(50824696-50824797)
chr3 (319-420)||(50851063-50851164)
chr3 (328-380)||(3710234-3710286)
chr3 (378-420)||(3710181-3710223)
chr3 (268-317)||(28469812-28469859)
chr3 (315-375)||(27340928-27340989)
[»] chr4 (6 HSPs)
chr4 (287-420)||(771641-771774)
chr4 (270-420)||(20867382-20867532)
chr4 (322-380)||(1877328-1877386)
chr4 (322-380)||(1891443-1891501)
chr4 (268-317)||(21531907-21531954)
chr4 (328-380)||(47522211-47522263)
[»] chr2 (5 HSPs)
chr2 (69-194)||(20371633-20371758)
chr2 (291-361)||(44373052-44373124)
chr2 (291-361)||(44388963-44389035)
chr2 (327-380)||(20621924-20621977)
chr2 (327-380)||(25483998-25484051)
[»] chr6 (6 HSPs)
chr6 (69-194)||(5488550-5488675)
chr6 (18-91)||(15391037-15391110)
chr6 (317-380)||(25550694-25550756)
chr6 (317-380)||(25992261-25992323)
chr6 (327-375)||(5995071-5995119)
chr6 (294-380)||(19828127-19828215)
[»] chr1 (5 HSPs)
chr1 (337-420)||(13450373-13450457)
chr1 (327-420)||(13805872-13805965)
chr1 (325-420)||(23950475-23950570)
chr1 (325-420)||(28993163-28993258)
chr1 (328-380)||(32137361-32137413)
[»] chr8 (3 HSPs)
chr8 (322-380)||(16759716-16759774)
chr8 (322-380)||(16773600-16773658)
chr8 (342-380)||(17527364-17527402)
[»] scaffold0039 (1 HSPs)
scaffold0039 (322-380)||(40449-40507)
[»] chr5 (1 HSPs)
chr5 (318-380)||(19223953-19224014)
[»] scaffold0632 (1 HSPs)
scaffold0632 (317-420)||(4750-4853)
[»] scaffold0497 (1 HSPs)
scaffold0497 (327-380)||(11409-11462)
[»] scaffold0545 (1 HSPs)
scaffold0545 (322-378)||(9620-9676)
[»] scaffold0484 (1 HSPs)
scaffold0484 (328-380)||(11119-11171)
[»] scaffold0156 (1 HSPs)
scaffold0156 (328-380)||(34975-35027)
[»] scaffold0016 (1 HSPs)
scaffold0016 (327-375)||(23875-23923)


Alignment Details
Target: scaffold0111 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 33835 - 33601
Alignment:
Q  18 tctttcacgttcggtccgaaccttgatgttacggttccgtttgtgctttgttccggtccggcttgaactcgttgttgattcacgaccggttgggatttgt 117  Q
    ||||||||| ||||||  ||  |||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33835 tctttcacgctcggtcgaaattttgatgttacagtttcgtttgtgctttgttccggtccggcttgaattcgttgttgattcacgaccggttgggatttgt 33736  T
Q  118 tgttgtttccgtcgattttgaatcggaagaaaaaggttgcgtgattactgtgtaaaagaaagaagcgaaaatagtgtgttcatggaagttgagttttacc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33735 tgttgtttccgtcgattttgaatcggaagaaaaaggttgcgtgattattgtgtaaaagaaagaagcgaaaatagtgtgttcatggaagttgagttttact 33636  T
Q  218 ggatttttgtgttcatcatgttcttgagtttgttc 252  Q
    ||||||||||||||||||||||||||| |||||||    
T  33635 ggatttttgtgttcatcatgttcttgattttgttc 33601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 69 - 245
Target Start/End: Original strand, 13508718 - 13508893
Alignment:
Q  69 tccggtccggcttgaactcgttgttgattcacgaccggttgggatttgttgttgtttccgtcgattttgaatcggaagaaaaaggttgcgtgattactgt 168  Q
    ||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13508718 tccggtctggcttgaactcgtggttgattcacgaccggtagggatttgttgttgtttccgtcgattttgaatcggaagaaaaaggttgtgtgattactgt 13508817  T
Q  169 gtaaaagaaagaagcgaaaatagtgtgttcatggaagttgagttttaccggatttttgtgttcatcatgttcttgag 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  13508818 gtaaaagaaagaagcgaaaatagtgtgttcatggaagttgagttttactggattttt-tgttcatcatgttcttgag 13508893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 319 - 420
Target Start/End: Complemental strand, 50824797 - 50824696
Alignment:
Q  319 cctttctctttttgcagccttgattttataccattagggttgaagataataaggaaataactaccgtgttactggatttggcaacaagcatttgacccta 418  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50824797 cctttctccttttgcagccttgattttataccattagggttgaagataataaggaaataactaccgtgttactggatttggcaacaagcctttgacccta 50824698  T
Q  419 tg 420  Q
    ||    
T  50824697 tg 50824696  T

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Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 319 - 420
Target Start/End: Original strand, 50851063 - 50851164
Alignment:
Q  319 cctttctctttttgcagccttgattttataccattagggttgaagataataaggaaataactaccgtgttactggatttggcaacaagcatttgacccta 418  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50851063 cctttctccttttgcagccttgattttataccattagggttgaagataataaggaaataactaccgtgttactggatttggcaacaagcctttgacccta 50851162  T
Q  419 tg 420  Q
    ||    
T  50851163 tg 50851164  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 380
Target Start/End: Complemental strand, 3710286 - 3710234
Alignment:
Q  328 ttttgcagccttgattttataccattagggttgaagataataaggaaataact 380  Q
    |||||||| |||| ||||||| ||||||||||||| | |||||||||||||||    
T  3710286 ttttgcaggcttgcttttatagcattagggttgaatagaataaggaaataact 3710234  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 420
Target Start/End: Complemental strand, 3710223 - 3710181
Alignment:
Q  378 actaccgtgttactggatttggcaacaagcatttgaccctatg 420  Q
    ||||||| ||||||||||||||||||||  |||||||||||||    
T  3710223 actaccgcgttactggatttggcaacaaaaatttgaccctatg 3710181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 28469812 - 28469859
Alignment:
Q  268 tgtttgcggctagggtttctttttctgtttgcggctgtggaaaattgtcc 317  Q
    |||||||||||| |||||  |||||||||||||||||||||| |||||||    
T  28469812 tgtttgcggctaaggttt--ttttctgtttgcggctgtggaagattgtcc 28469859  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 27340928 - 27340989
Alignment:
Q  315 tccccctttctcttttt-gcagccttgattttataccattagggttgaagataataaggaaa 375  Q
    |||||| |||||||||| ||||  ||||||||||| ||||||||||||||| || |||||||    
T  27340928 tccccccttctcttttttgcaggtttgattttatagcattagggttgaagagaaaaaggaaa 27340989  T

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Target: chr4 (Bit Score: 118; Significance: 5e-60; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 287 - 420
Target Start/End: Complemental strand, 771774 - 771641
Alignment:
Q  287 tttttctgtttgcggctgtggaaaattgtccccctttctctttttgcagccttgattttataccattagggttgaagataataaggaaataactaccgtg 386  Q
    |||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  771774 tttttctgtttgcggctgtggaaaattgtgtgtctttctctttttgcagccttgattttataccattagggttgaagataataaggaaataactaccgtg 771675  T
Q  387 ttactggatttggcaacaagcatttgaccctatg 420  Q
    ||||||||||||||||||||||||||||||||||    
T  771674 ttactggatttggcaacaagcatttgaccctatg 771641  T

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Target: chr4; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 270 - 420
Target Start/End: Original strand, 20867382 - 20867532
Alignment:
Q  270 tttgcggctagggtttctttttctgtttgcggctgtggaaaattgtcc--ccctttctctttttgcagccttgattttataccattagggttgaagataa 367  Q
    |||||||||||| |||  |||||||||||||||||||||||||||||   | |||||||||||||||||||| |||||||||||||| ||||||||||||    
T  20867382 tttgcggctaggtttt--ttttctgtttgcggctgtggaaaattgtctgtctctttctctttttgcagccttcattttataccattaaggttgaagataa 20867479  T
Q  368 taaggaaataactaccgtgttactggatttggcaacaagcatttgaccctatg 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20867480 taaggaaataactaccgtgttactggatttggcaacaagcatttgaccctatg 20867532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 322 - 380
Target Start/End: Original strand, 1877328 - 1877386
Alignment:
Q  322 ttctctttttgcagccttgattttataccattagggttgaagataataaggaaataact 380  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1877328 ttctctttttgcagccctgattttataccattagggttgaagataataaggaaataact 1877386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 322 - 380
Target Start/End: Original strand, 1891443 - 1891501
Alignment:
Q  322 ttctctttttgcagccttgattttataccattagggttgaagataataaggaaataact 380  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1891443 ttctctttttgcagccctgattttataccattagggttgaagataataaggaaataact 1891501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 21531907 - 21531954
Alignment:
Q  268 tgtttgcggctagggtttctttttctgtttgcggctgtggaaaattgtcc 317  Q
    |||||||||||| |||||  |||||||||||||||||||||| |||||||    
T  21531907 tgtttgcggctaaggttt--ttttctgtttgcggctgtggaagattgtcc 21531954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 47522211 - 47522263
Alignment:
Q  328 ttttgcagccttgattttataccattagggttgaagataataaggaaataact 380  Q
    ||||||||  ||||||||||| ||||||||||||| | |||||||||| ||||    
T  47522211 ttttgcaggtttgattttatagcattagggttgaaaagaataaggaaacaact 47522263  T

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Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 69 - 194
Target Start/End: Original strand, 20371633 - 20371758
Alignment:
Q  69 tccggtccggcttgaactcgttgttgattcacgaccggttgggatttgttgttgtttccgtcgattttgaatcggaagaaaaaggttgcgtgattactgt 168  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  20371633 tccggtctggcttgaactcgtggttgattcacgaccggttgggatttgttgttgtttccgtcgattttgaatcggaagaaaaaggttgcgtgattattgt 20371732  T
Q  169 gtaaaagaaagaagcgaaaatagtgt 194  Q
    ||||||||||||||||||||||||||    
T  20371733 gtaaaagaaagaagcgaaaatagtgt 20371758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 44373124 - 44373052
Alignment:
Q  291 tctgtttgcggctgtggaaaattgtccccctttct--ctttttgcagccttgattttataccattagggttga 361  Q
    |||||||||||||||||||||||||||||||||||   |||||||||  || | ||||||||| |||||||||    
T  44373124 tctgtttgcggctgtggaaaattgtccccctttcttcttttttgcaggttttaatttataccactagggttga 44373052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 44389035 - 44388963
Alignment:
Q  291 tctgtttgcggctgtggaaaattgtccccctttct--ctttttgcagccttgattttataccattagggttga 361  Q
    |||||||||||||||||||||||||||||||||||   |||||||||  || | ||||||||| |||||||||    
T  44389035 tctgtttgcggctgtggaaaattgtccccctttcttcttttttgcaggttttaatttataccactagggttga 44388963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 380
Target Start/End: Complemental strand, 20621977 - 20621924
Alignment:
Q  327 tttttgcagccttgattttataccattagggttgaagataataaggaaataact 380  Q
    |||||||||  ||||||||||| ||||||||||||||| ||||||||| |||||    
T  20621977 tttttgcaggtttgattttatagcattagggttgaagagaataaggaagtaact 20621924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 380
Target Start/End: Complemental strand, 25484051 - 25483998
Alignment:
Q  327 tttttgcagccttgattttataccattagggttgaagataataaggaaataact 380  Q
    |||||||||  |||||||||||| |||||||||||| | |||||||||||||||    
T  25484051 tttttgcaggtttgattttatacaattagggttgaataaaataaggaaataact 25483998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 7e-53; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 69 - 194
Target Start/End: Original strand, 5488550 - 5488675
Alignment:
Q  69 tccggtccggcttgaactcgttgttgattcacgaccggttgggatttgttgttgtttccgtcgattttgaatcggaagaaaaaggttgcgtgattactgt 168  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||    
T  5488550 tccggtctggcttgaactcgtggttgattcacgaccggttgggatttgttgttttttccgtcgattttgaatcggaagaaaaaggttgtgtgattattgt 5488649  T
Q  169 gtaaaagaaagaagcgaaaatagtgt 194  Q
    ||||||||||||||||||||||||||    
T  5488650 gtaaaagaaagaagcgaaaatagtgt 5488675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 15391037 - 15391110
Alignment:
Q  18 tctttcacgttcggtccgaaccttgatgttacggttccgtttgtgctttgttccggtccggcttgaactcgttg 91  Q
    |||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||    
T  15391037 tctttcacgtccggtccgaaccttgatgttatggttccgtttgtactttgttccggtccggtttgaactcgttg 15391110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 380
Target Start/End: Complemental strand, 25550756 - 25550694
Alignment:
Q  317 cccctttctctttttgcagccttgattttataccattagggttgaagataataaggaaataact 380  Q
    ||||||||| |||||||||  ||||||||||| ||||||||||||||| || ||||||| ||||    
T  25550756 cccctttct-tttttgcaggtttgattttatagcattagggttgaagagaaaaaggaaacaact 25550694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 380
Target Start/End: Complemental strand, 25992323 - 25992261
Alignment:
Q  317 cccctttctctttttgcagccttgattttataccattagggttgaagataataaggaaataact 380  Q
    ||||||||| |||||||||  ||||||||||| ||||||||||||||| || ||||||| ||||    
T  25992323 cccctttct-tttttgcaggtttgattttatagcattagggttgaagagaaaaaggaaacaact 25992261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 5995119 - 5995071
Alignment:
Q  327 tttttgcagccttgattttataccattagggttgaagataataaggaaa 375  Q
    |||||||||  ||||||||||| ||||||||||||||| || |||||||    
T  5995119 tttttgcaggtttgattttatagcattagggttgaagagaaaaaggaaa 5995071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 380
Target Start/End: Original strand, 19828127 - 19828215
Alignment:
Q  294 gtttgcggctgtggaaaattgtc-cccctttctct-ttttgcagccttgattttataccattagggttgaagataataaggaaataact 380  Q
    ||||||||||||||||||||||| ||  ||||| | ||||||||  ||| ||||||| ||||||||||| |   |||||||||||||||    
T  19828127 gtttgcggctgtggaaaattgtctccgttttctgtattttgcaggtttgcttttatagcattagggttggattgaataaggaaataact 19828215  T

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Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 337 - 420
Target Start/End: Complemental strand, 13450457 - 13450373
Alignment:
Q  337 cttgattttataccattagggtt-gaagataataaggaaataactaccgtgttactggatttggcaacaagcatttgaccctatg 420  Q
    |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  13450457 cttgcttttatagcattagggtttgaagataataaggaaataactaccgtgttactggatttggccacaaacatttgaccctatg 13450373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 327 - 420
Target Start/End: Original strand, 13805872 - 13805965
Alignment:
Q  327 tttttgcagccttgattttataccattagggttgaagataataaggaaataactaccgtgttactggatttggcaacaagcatttgaccctatg 420  Q
    ||||||||| |||| ||||||| |||||||||||||  ||||||||||||| |||||| |||||||||||||||||| | | ||||||||||||    
T  13805872 tttttgcaggcttgcttttatatcattagggttgaaagtaataaggaaatatctaccgcgttactggatttggcaaccaacgtttgaccctatg 13805965  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 420
Target Start/End: Complemental strand, 23950570 - 23950475
Alignment:
Q  325 tctttttgcagccttgattttataccattagggttgaagataataaggaaataactaccgtgttactggatttggcaacaagcatttgaccctatg 420  Q
    |||||||||||  || | |||||||||||||||||||| | ||||||||||| ||||| |  || ||||||||||||||||   ||||||||||||    
T  23950570 tctttttgcaggtttcaatttataccattagggttgaatagaataaggaaattactactgatttgctggatttggcaacaacactttgaccctatg 23950475  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 420
Target Start/End: Original strand, 28993163 - 28993258
Alignment:
Q  325 tctttttgcagccttgattttataccattagggttgaagataataaggaaataactaccgtgttactggatttggcaacaagcatttgaccctatg 420  Q
    |||||||||||  || | |||||||||||||||||||| | ||||||||||| ||||| |  || ||||||||||||||||   ||||||||||||    
T  28993163 tctttttgcaggtttcaatttataccattagggttgaatagaataaggaaattactactgatttgctggatttggcaacaacactttgaccctatg 28993258  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 32137361 - 32137413
Alignment:
Q  328 ttttgcagccttgattttataccattagggttgaagataataaggaaataact 380  Q
    ||||||||  ||||||||||| ||||||||||||||  || ||||||||||||    
T  32137361 ttttgcaggtttgattttatagcattagggttgaagggaaaaaggaaataact 32137413  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 322 - 380
Target Start/End: Complemental strand, 16759774 - 16759716
Alignment:
Q  322 ttctctttttgcagccttgattttataccattagggttgaagataataaggaaataact 380  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16759774 ttctctttttgcagccctgattttataccattagggttgaagataataaggaaataact 16759716  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 322 - 380
Target Start/End: Complemental strand, 16773658 - 16773600
Alignment:
Q  322 ttctctttttgcagccttgattttataccattagggttgaagataataaggaaataact 380  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16773658 ttctctttttgcagccctgattttataccattagggttgaagataataaggaaataact 16773600  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 380
Target Start/End: Complemental strand, 17527402 - 17527364
Alignment:
Q  342 ttttataccattagggttgaagataataaggaaataact 380  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  17527402 ttttatatcattagggttgaagataataaggaaataact 17527364  T

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Target: scaffold0039 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 380
Target Start/End: Original strand, 40449 - 40507
Alignment:
Q  322 ttctctttttgcagccttgattttataccattagggttgaagataataaggaaataact 380  Q
    |||| |||||||||  ||||||||||||||||||||||||| | |||||||||||||||    
T  40449 ttctttttttgcaggtttgattttataccattagggttgaatagaataaggaaataact 40507  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 318 - 380
Target Start/End: Complemental strand, 19224014 - 19223953
Alignment:
Q  318 ccctttctctttttgcagccttgattttataccattagggttgaagataataaggaaataact 380  Q
    |||||||| |||||||||  ||||||||||||||||||||||||| | |||||||||||||||    
T  19224014 ccctttct-tttttgcaggtttgattttataccattagggttgaataaaataaggaaataact 19223953  T

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Target: scaffold0632 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 420
Target Start/End: Complemental strand, 4853 - 4750
Alignment:
Q  317 cccctttctctttttgcagccttgattttataccattagggttgaagataataaggaaataactaccgtgttactggatttggcaacaagcatttgaccc 416  Q
    ||||| ||| |||||||||  || | |||||||||||||||||| | | ||||||||||| ||||| |  || ||||||||||||||||   ||||||||    
T  4853 cccctctctttttttgcaggtttcaatttataccattagggttggatagaataaggaaattactactgatttgctggatttggcaacaaaactttgaccc 4754  T
Q  417 tatg 420  Q
    ||||    
T  4753 tatg 4750  T

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Target: scaffold0497 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 380
Target Start/End: Complemental strand, 11462 - 11409
Alignment:
Q  327 tttttgcagccttgattttataccattagggttgaagataataaggaaataact 380  Q
    |||||||||  ||||||||||| ||||||||||||||| || ||||||||||||    
T  11462 tttttgcaggtttgattttatagcattagggttgaagagaaaaaggaaataact 11409  T

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Target: scaffold0545 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0545
Description:

Target: scaffold0545; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 9620 - 9676
Alignment:
Q  322 ttctctttttgcagccttgattttataccattagggttgaagataataaggaaataa 378  Q
    |||||||||||||||||| ||||||||  ||||||||||| || || ||||||||||    
T  9620 ttctctttttgcagccttcattttatagtattagggttgatgagaaaaaggaaataa 9676  T

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Target: scaffold0484 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 11119 - 11171
Alignment:
Q  328 ttttgcagccttgattttataccattagggttgaagataataaggaaataact 380  Q
    |||| ||| |||| ||||||| ||||||||||||| | |||||||||||||||    
T  11119 ttttacaggcttgcttttatagcattagggttgaatagaataaggaaataact 11171  T

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Target: scaffold0156 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 34975 - 35027
Alignment:
Q  328 ttttgcagccttgattttataccattagggttgaagataataaggaaataact 380  Q
    ||||||||  ||||||||||| ||||||||||||||  || ||||||||||||    
T  34975 ttttgcaggtttgattttatagcattagggttgaagggaaaaaggaaataact 35027  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 23923 - 23875
Alignment:
Q  327 tttttgcagccttgattttataccattagggttgaagataataaggaaa 375  Q
    |||||||||  ||||||||||| ||||||||||||||| || |||||||    
T  23923 tttttgcaggtttgattttatagcattagggttgaagagaaaaaggaaa 23875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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