View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14294_low_4 (Length: 390)
Name: NF14294_low_4
Description: NF14294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14294_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 107 - 372
Target Start/End: Original strand, 7617568 - 7617831
Alignment:
| Q |
107 |
gcaaagtgcactgtttttccatagtgtaaagccaatttcgctgctactttccggnnnnnnnnncactttaaagacagaacagaagcttataaaagcacac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7617568 |
gcaaagtgcactgtttttccatagtgtaaagccaatttcgctgctactttccggttttttt--cactttaaagacagaacagaagcttataaaagcacac |
7617665 |
T |
|
| Q |
207 |
cctattggcttcacacattcattgaaatcacatgcatcattgatttcttatatgcagctacacataacaattaccannnnnnnngttttgctttgaacaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7617666 |
cctattggcttcacacattcattgaaatcacatgcatcattgatttcttatatgcaactacacataacaattaccattttttttgttttgctttgaacaa |
7617765 |
T |
|
| Q |
307 |
caaagtacaaacataaattaagaccagacaatttttaaggttaagcaccatgtctgactcagatat |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7617766 |
caaagtacaaacataaattaagaccagacaatttttaaggttaagcaccatgtctgactcagatat |
7617831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University