View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14294_low_5 (Length: 366)
Name: NF14294_low_5
Description: NF14294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14294_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 29582417 - 29582070
Alignment:
| Q |
1 |
ctgatttagccaaaatggtagcaaactcattgaaactaataacaccatcaccattgctatcagcttcagccatcatgttagcaagctcatggtatgttag |
100 |
Q |
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| T |
29582417 |
ctgatttagccaaaatggtagcaaactcattgaaactaataacaccatcaccattgctatcagcttcagccatcatgttagcaagctcatggtatgttag |
29582318 |
T |
|
| Q |
101 |
aggatggcccatctttgccatggatccggcaagctcagccgcggtgatgtaaccgttaccatcgcgatcaaacgagcgaaaaacctccaaaagttgttct |
200 |
Q |
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| T |
29582317 |
aggatggcccatctttgccatggatccggcaagctcagccgcggtgatgtaaccgttaccatcgcgatcaaacgagcgaaaaacctccaaaagttgttct |
29582218 |
T |
|
| Q |
201 |
tgattgatgagaacatcctcattcatgtcgggcataatagcattaacaagctcgtcgaattcgatgtatccgttgtgattgttgtccatgttgttgagta |
300 |
Q |
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| T |
29582217 |
tgattgatgagaacatcctcattcatgtcgggcataatagcattaacaagctcgtcgaattcgatgtatccgttgtgattgttgtccatgttgttgagta |
29582118 |
T |
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| Q |
301 |
gggcataaagttcatcgcctgttggtttgatgccgagggagcggagga |
348 |
Q |
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| T |
29582117 |
gggcataaagttcatcgcctgttggtttgatgccgagggagcggagga |
29582070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 46040953 - 46040907
Alignment:
| Q |
8 |
agccaaaatggtagcaaactcattgaaactaataacaccatcaccat |
54 |
Q |
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||||| ||| |||||||||||| | |||||||||||||||||||||| |
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| T |
46040953 |
agccataatagtagcaaactcactaaaactaataacaccatcaccat |
46040907 |
T |
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