View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14294_low_7 (Length: 327)
Name: NF14294_low_7
Description: NF14294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14294_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 14 - 313
Target Start/End: Original strand, 16895365 - 16895664
Alignment:
| Q |
14 |
aacctgtgtggctttaataacagcaccagcagcaagataaagagtcatatgactagtaagattgaagctctccgttaagtacacaccaggaggcacataa |
113 |
Q |
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| T |
16895365 |
aacctgtgtggctttaataacagcaccagcagcaagataaagagtcatatgactagtaagattgaagctctccgttaagtacacaccaggaggcacataa |
16895464 |
T |
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| Q |
114 |
aggagcgtgccaccacgtctccttaagtgctgaatcctataaatagctgccctaaatgcctttgagttcagcgttttgccgtcgccgacgccaccaaaat |
213 |
Q |
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| T |
16895465 |
aggagcgtgccaccacgtcttcttaagtgctgaatcctataaatagctgctctgaatgcctttgagttcagggttttgccgtctccgacaccgccgaaat |
16895564 |
T |
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| Q |
214 |
cggttatggaaatcgtgtcggcgcggtgtcggaacggcactatgccagaacatgttgtggaatatgaggcagagatagaagagaaatgggagaagaaaat |
313 |
Q |
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| T |
16895565 |
cagttatggaaatcgtgtcggcacggtgtcggaacggcactatgccagaacatgttgtggaatatgaggcagagatagaagagaaatgggagaagaaaat |
16895664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 39274901 - 39274966
Alignment:
| Q |
15 |
acctgtgtggctttaataacagcaccagcagcaagataaagagtcatatgactagtaagattgaag |
80 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39274901 |
acctgtgtggctttgataacagcaccagcagcaagatgaagagtcatatgactagtaagattgaag |
39274966 |
T |
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