View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14294_low_9 (Length: 300)
Name: NF14294_low_9
Description: NF14294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14294_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 31052473 - 31052684
Alignment:
| Q |
27 |
atactgtcaatttttccttcacttaatccagcaatttcaaagg-tagatatatatttataaattaaaatcgtgtattggctttcaacatttt-ttgttat |
124 |
Q |
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| T |
31052473 |
atactgtcaatttttccttcacttgatccagcaatttcaaggtatatatatatatttataaatcaaaatcgtgtattggttttctacttttttttgttat |
31052572 |
T |
|
| Q |
125 |
ggaatttgtactaccttatctgttgcttcgattgatctcaatttggtgtgattctgaagtatatttcatagcatataatataacatatatttaggccaaa |
224 |
Q |
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||||||||| |||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31052573 |
ggaatttgtgctactttatctgttgcttcgattaatctcaatttggtgtgattatgaagtatatttcatagcatataatataacatatatttaggcc-aa |
31052671 |
T |
|
| Q |
225 |
attttatcttatt |
237 |
Q |
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||||||||||||| |
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| T |
31052672 |
attttatcttatt |
31052684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 3816745 - 3816644
Alignment:
| Q |
18 |
aatagtgacatactgtcaatttttccttcacttaatccagcaatttcaaaggtagatatatatttataaattaaaatcgtgtattggctttcaacatttt |
117 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3816745 |
aatagtgacatactgtcaatttttccttcacttgatccagcaatttcaaaggtagatatatatttataaattaaaatcgtgtattggctttctacatttt |
3816646 |
T |
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| Q |
118 |
tt |
119 |
Q |
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|| |
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| T |
3816645 |
tt |
3816644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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