View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14295_high_10 (Length: 504)
Name: NF14295_high_10
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14295_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 9 - 486
Target Start/End: Original strand, 42788159 - 42788639
Alignment:
| Q |
9 |
gaagaatatgggatgctacaaacataattatccttaatggtttcactgtcaaaaactttttgcgcaataggttcaagttgattcactaaatgactattat |
108 |
Q |
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| T |
42788159 |
gaagaaaatgggatgctacaaacataattatccttaatggtttcactgtcaaaaactttttgcacaataggttcaagttgattcactaaatgactattac |
42788258 |
T |
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| Q |
109 |
tgtcatagnnnnnnnnnnnnnnnnnnnnncatgtatatgtatt------tggaatattgataaagttctgatcaacaatattatagttttgggttgcagc |
202 |
Q |
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| T |
42788259 |
tgtcatag---tgctgctgctgctgctgccatgtatatgtatttgtatttggaatattgataaaattctgatcaacaatattatagttttgggtggcagc |
42788355 |
T |
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| Q |
203 |
atcacttttggtggtgatttgatgattttcttgaatatttggattgagatgatgaattaatgaccatgtatctaattcatatgaagatggaatatttgat |
302 |
Q |
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| T |
42788356 |
atcacttttggtggtgatttgatgattttcttgaatatttggattgagatgatgaattaatgaccatgtatctaattcatatgaagatggaatatttgat |
42788455 |
T |
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| Q |
303 |
gatggtactgtttcaggcaatattggattattctgaacatgtaggaaattgggattataactgttgatatcaatatttttgatatcattttgatgatcaa |
402 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42788456 |
gatggtagtgtttcaggcaatattggattattctgaacatgtaggaaattgggattataactgttgatatcaatatttttgatatcattttgatgatcaa |
42788555 |
T |
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| Q |
403 |
taccttgtaggattggagttgggatattgatgggaaggtaaaggtggttgtcaaagtgatattgatgattggagttaaggatag |
486 |
Q |
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| T |
42788556 |
taccttgtaggattggagttgggatattgatgggaaggtaaaggtggttgtcaaagtgatattgatgattggagttaaggatag |
42788639 |
T |
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