View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14295_high_15 (Length: 435)
Name: NF14295_high_15
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14295_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 11 - 419
Target Start/End: Complemental strand, 5149605 - 5149198
Alignment:
| Q |
11 |
aatatataaatgaagaataaggattcaaacatcaactctaacatactgcaatgtttggaccaattaagttacatttatggaaacatttatatatttctcc |
110 |
Q |
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|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5149605 |
aataaataaatgaagaatagggattcaaacaccaactctaacatactgcaatgttcggactaattaagttacatttatggaaacatttatatatttctcc |
5149506 |
T |
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| Q |
111 |
ctttataaaaggcctcgttaaaattatctctcttgtatctaccnnnnnnnnnttatctctcttgtattaataattttttaattaagcacatggaatgact |
210 |
Q |
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| T |
5149505 |
ttttataaaaggcctcgttaaaattatctctcttgtatctta-aaaaaaaaattatctctcttgtattaataattttttaattaagcacatggaatgact |
5149407 |
T |
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| Q |
211 |
tacagttgacaaaaatgctaaacttatcatgcatgcaattaaacactggtacaaacacgtgtaattgccttcaatattgaatcatagtcaagtatgatta |
310 |
Q |
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| T |
5149406 |
taaagttgacaaaaatgctaaacttatcatgcatgcaattaaacacttgtacaaacacgtgtaattgccttcaatattgaatcatagtcaagtatgatta |
5149307 |
T |
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| Q |
311 |
cagttatatatagttaaaccgacaaaaagtttcaatattagcnnnnnnnctattttaatgtctatgcaccttcagacatttatggcctatgaagaataat |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5149306 |
cagttatatatagttaaaccgacaaaaagtttcaatattaactttttttccattttaatgtctatgcaccttcagacatttatggcctatgaagaataat |
5149207 |
T |
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| Q |
411 |
atataaaaa |
419 |
Q |
| |
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||||||||| |
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| T |
5149206 |
atataaaaa |
5149198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 194 - 419
Target Start/End: Complemental strand, 5178328 - 5178102
Alignment:
| Q |
194 |
aagcacatggaatgacttacagttgacaaaaatgctaaacttatcatgcatgcaattaaacactggtacaaacacgtgtaattgccttcaatattgaatc |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5178328 |
aagcacatggaatgacttacagttgacaaaaatgctaaacttatcatgcatgcaattaaacacttgtacaaacacgtgtaattgccttcaatattgaatc |
5178229 |
T |
|
| Q |
294 |
atagtcaagtatgattacagttatatatagttaaaccgacaaaaagtttcaat-attagcnnnnnnnctattttaatgtctatgcaccttcagacattta |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | |||||||||| |||||||||||||||||||| |
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| T |
5178228 |
atagtcaagtatgattacagttatatatagttaaaccgacaaaaagtttcaataattaactttttttccattttaatgtttatgcaccttcagacattta |
5178129 |
T |
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| Q |
393 |
tggcctatgaagaataatatataaaaa |
419 |
Q |
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| T |
5178128 |
tggcctatgaagaataatatataaaaa |
5178102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 5142807 - 5142675
Alignment:
| Q |
16 |
ataaatgaagaataaggattcaaacatcaactctaacatactgcaatgtttggaccaattaagttacatttatggaaacatttatatatttctcccttta |
115 |
Q |
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|||||||||||||||||||||||||| | || |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5142807 |
ataaatgaagaataaggattcaaacaccgaccctaacatactacaatgttctgaccaattaagttacatttatggaaacatttatatatttctcccttta |
5142708 |
T |
|
| Q |
116 |
taaaaggcctcgttaaaattatctctcttgtat |
148 |
Q |
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| T |
5142707 |
taaaaggcctcgttaaaattatctctcttgtat |
5142675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 5180071 - 5179955
Alignment:
| Q |
16 |
ataaatgaagaataaggattcaaacatcaactctaacatactgcaatgtttggaccaattaagttacatttatggaaacatttatatatttctcccttta |
115 |
Q |
| |
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|||||||||||||||||||||||||| | || ||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5180071 |
ataaatgaagaataaggattcaaacaccgaccataacatattgcaatgttccgatcaattaagttacatttatggaaacatttatatatttctcccttta |
5179972 |
T |
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| Q |
116 |
taaaaggcctcgttaaa |
132 |
Q |
| |
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|||||| |||| ||||| |
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| T |
5179971 |
taaaagacctcattaaa |
5179955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 5170545 - 5170452
Alignment:
| Q |
16 |
ataaatgaagaataaggattcaaacatcaactctaacatactgcaatgtttggaccaattaagttacatttatggaaacatttatatatttctc |
109 |
Q |
| |
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|||||||||||||||||||||||||| | || |||||||||||||||||| || ||||| || ||| |||||||||| ||||||||||||||| |
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| T |
5170545 |
ataaatgaagaataaggattcaaacaccgaccctaacatactgcaatgttccgatcaattgagctacgtttatggaaagatttatatatttctc |
5170452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 267
Target Start/End: Complemental strand, 5177763 - 5177689
Alignment:
| Q |
198 |
acatggaatgacttacagttgaca-----aaaatgctaaacttatcatgcatgcaattaaacactggtacaaaca |
267 |
Q |
| |
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||||||||||||||| |||||||| |||||||||||| ||||||| ||||||||||||||| |||| |||| |
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| T |
5177763 |
acatggaatgacttatagttgacattaacaaaatgctaaacatatcatgtatgcaattaaacacttgtacgaaca |
5177689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 5205178 - 5205137
Alignment:
| Q |
216 |
ttgacaaaaatgctaaacttatcatgcatgcaattaaacact |
257 |
Q |
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|||||||||||| |||||||||| ||||||||||||| |||| |
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| T |
5205178 |
ttgacaaaaatggtaaacttatcttgcatgcaattaatcact |
5205137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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