View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14295_high_17 (Length: 426)
Name: NF14295_high_17
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14295_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 32632087 - 32631692
Alignment:
| Q |
18 |
ccactaaataatcatatagttttcatatctctttgataaaaagcaaaaactttataacaagggactcttcaagatatacttatcatttttccatttctaa |
117 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32632087 |
ccactaaataataatatagctttcatatctctttgataaaaagcaaaaactttataacaagggactcttcaagatatacttatcatttttccatttctaa |
32631988 |
T |
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| Q |
118 |
tggttacgtcttaatcataattcttgctatttataaggaaggccacttcatacatttcacagcatctctaaacaataagctataacatttttcatatttt |
217 |
Q |
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| T |
32631987 |
tggttacgtcttaatcataattcttgctatttataaggaaggccacttcatacatttcacagcatctctaaacaataagctataacatttttcatatttt |
32631888 |
T |
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| Q |
218 |
cttgaatacaaagaaatggaaaaaataggtgttgctaataaaatgaataaggcaaggccttatgtgttaacagtggcacttcaatttgggtttgcaggag |
317 |
Q |
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| T |
32631887 |
cttgaatacaaagaaatggaaaaaataggtgttgctaataaaatgaataaggcaaggccttatgtgttaacagtggcacttcaatttgggtttgcaggag |
32631788 |
T |
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| Q |
318 |
catacatattctccatggccagtttcaacatgggaatgaatcgttttgtgttcattgtttatcgtaatgtcattgctgcaattgcccttgctccct |
413 |
Q |
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| T |
32631787 |
catacatattctccatggccagtttcaacatgggaatgaatcgttttgtgttcattgtttatcgtaatgtcattgctgcaattgcccttgctccct |
32631692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 52960669 - 52960542
Alignment:
| Q |
18 |
ccactaaataatcatatagttttcatatctctttgataaaaagcaaaaactttataacaagggactcttcaagatatacttatcatttttccatttctaa |
117 |
Q |
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|||||||||||| |||| | |||||||||| || |||||||||| |||||||||||| | ||||||||||||||||||||||||||||| |||||||||| |
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| T |
52960669 |
ccactaaataataatattgctttcatatctatt-gataaaaagcgaaaactttataagaggggactcttcaagatatacttatcattttcccatttctaa |
52960571 |
T |
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| Q |
118 |
tgg-ttacgtcttaatcataattcttgct |
145 |
Q |
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||| |||||||||||||| ||||| |||| |
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| T |
52960570 |
tggattacgtcttaatcaaaattcgtgct |
52960542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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