View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14295_high_22 (Length: 340)

Name: NF14295_high_22
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14295_high_22
NF14295_high_22
[»] chr5 (46 HSPs)
chr5 (9-179)||(27867789-27867959)
chr5 (76-179)||(1035118-1035221)
chr5 (9-179)||(13568044-13568214)
chr5 (60-181)||(39743168-39743289)
chr5 (76-182)||(28387196-28387306)
chr5 (9-108)||(7021827-7021926)
chr5 (76-179)||(25897115-25897218)
chr5 (9-106)||(37820823-37820920)
chr5 (60-176)||(34122461-34122577)
chr5 (59-180)||(17966905-17967026)
chr5 (76-180)||(41798751-41798855)
chr5 (76-178)||(34123971-34124073)
chr5 (95-177)||(34077762-34077844)
chr5 (76-176)||(1397386-1397486)
chr5 (99-179)||(42942510-42942590)
chr5 (60-143)||(8702218-8702301)
chr5 (76-179)||(41799803-41799906)
chr5 (9-67)||(34077839-34077897)
chr5 (60-175)||(17965787-17965902)
chr5 (13-67)||(14279896-14279950)
chr5 (9-67)||(28886362-28886420)
chr5 (9-62)||(1035260-1035313)
chr5 (60-153)||(18538355-18538448)
chr5 (9-62)||(25897023-25897076)
chr5 (60-156)||(28388539-28388635)
chr5 (99-179)||(43093942-43094022)
chr5 (60-164)||(43094596-43094700)
chr5 (76-123)||(7017502-7017549)
chr5 (60-179)||(7757259-7757378)
chr5 (14-57)||(21979648-21979691)
chr5 (93-144)||(33995201-33995252)
chr5 (93-179)||(20192287-20192373)
chr5 (12-62)||(28387345-28387395)
chr5 (97-179)||(42537135-42537217)
chr5 (60-156)||(25877579-25877674)
chr5 (93-181)||(30611171-30611259)
chr5 (9-57)||(38860146-38860194)
chr5 (95-158)||(540914-540977)
chr5 (93-156)||(3603201-3603264)
chr5 (62-176)||(30887382-30887496)
chr5 (95-164)||(31787501-31787571)
chr5 (60-138)||(34682232-34682310)
chr5 (9-57)||(11033406-11033454)
chr5 (93-181)||(18310074-18310162)
chr5 (76-156)||(25889951-25890031)
chr5 (60-156)||(41201685-41201781)
[»] chr1 (52 HSPs)
chr1 (9-179)||(44465530-44465700)
chr1 (9-179)||(23913791-23913960)
chr1 (9-179)||(5077875-5078044)
chr1 (9-179)||(30905705-30905873)
chr1 (61-179)||(6562182-6562300)
chr1 (9-120)||(41453831-41453942)
chr1 (13-123)||(20349447-20349557)
chr1 (9-107)||(29356634-29356732)
chr1 (94-179)||(37014884-37014969)
chr1 (60-179)||(9711671-9711790)
chr1 (76-179)||(48751446-48751549)
chr1 (59-179)||(27484993-27485113)
chr1 (60-179)||(51289980-51290099)
chr1 (60-156)||(51666659-51666754)
chr1 (60-179)||(23276128-23276247)
chr1 (61-180)||(51288820-51288939)
chr1 (60-182)||(11183117-11183239)
chr1 (60-182)||(46973135-46973257)
chr1 (59-123)||(6557905-6557969)
chr1 (9-73)||(15047348-15047412)
chr1 (76-156)||(19054016-19054096)
chr1 (13-73)||(31945808-31945868)
chr1 (60-120)||(44470031-44470091)
chr1 (60-123)||(30910023-30910086)
chr1 (80-179)||(52805573-52805672)
chr1 (95-181)||(35521546-35521632)
chr1 (60-182)||(41804053-41804175)
chr1 (60-126)||(52802117-52802183)
chr1 (62-119)||(15047276-15047333)
chr1 (60-156)||(46141739-46141835)
chr1 (14-144)||(4515995-4516130)
chr1 (60-155)||(8458943-8459037)
chr1 (9-60)||(13629470-13629521)
chr1 (76-126)||(23359385-23359435)
chr1 (12-73)||(9711597-9711658)
chr1 (60-176)||(19499132-19499246)
chr1 (102-179)||(29438082-29438159)
chr1 (13-73)||(3948409-3948469)
chr1 (13-73)||(3983153-3983213)
chr1 (93-181)||(23272781-23272869)
chr1 (76-156)||(38689889-38689968)
chr1 (13-73)||(38776073-38776133)
chr1 (9-57)||(44621061-44621109)
chr1 (65-180)||(44596794-44596909)
chr1 (14-57)||(46973285-46973328)
chr1 (102-156)||(13173793-13173847)
chr1 (60-138)||(13178152-13178230)
chr1 (98-156)||(42570099-42570157)
chr1 (95-144)||(6437594-6437643)
chr1 (12-57)||(8460043-8460088)
chr1 (9-57)||(22397875-22397923)
chr1 (99-179)||(46886446-46886526)
[»] chr3 (59 HSPs)
chr3 (9-179)||(23443076-23443245)
chr3 (9-172)||(2745175-2745337)
chr3 (76-179)||(36817557-36817660)
chr3 (61-179)||(7843038-7843156)
chr3 (60-181)||(49219811-49219932)
chr3 (60-179)||(7841055-7841174)
chr3 (9-123)||(50953292-50953405)
chr3 (60-185)||(41137646-41137771)
chr3 (76-156)||(14398492-14398572)
chr3 (95-162)||(9473943-9474010)
chr3 (60-179)||(48250889-48251008)
chr3 (9-73)||(13747662-13747726)
chr3 (60-180)||(46989480-46989600)
chr3 (60-120)||(2743391-2743451)
chr3 (9-73)||(9429792-9429856)
chr3 (60-120)||(13743286-13743346)
chr3 (97-164)||(66850-66917)
chr3 (9-64)||(48250813-48250868)
chr3 (76-179)||(50216890-50216993)
chr3 (93-179)||(7247913-7247999)
chr3 (60-118)||(13747738-13747796)
chr3 (12-156)||(6505922-6506067)
chr3 (9-62)||(14398611-14398664)
chr3 (76-165)||(34691573-34691662)
chr3 (60-156)||(14402990-14403086)
chr3 (60-156)||(28611120-28611216)
chr3 (13-73)||(30947600-30947660)
chr3 (123-179)||(49217045-49217101)
chr3 (93-156)||(2432996-2433059)
chr3 (80-123)||(6740895-6740938)
chr3 (9-60)||(16444674-16444725)
chr3 (60-123)||(50957686-50957749)
chr3 (96-179)||(51696571-51696654)
chr3 (60-138)||(41802973-41803051)
chr3 (12-73)||(7837661-7837722)
chr3 (76-181)||(19341630-19341735)
chr3 (60-121)||(34694454-34694515)
chr3 (13-73)||(3948795-3948855)
chr3 (60-120)||(4002525-4002585)
chr3 (60-156)||(29918361-29918457)
chr3 (60-156)||(29929383-29929479)
chr3 (60-156)||(29967514-29967610)
chr3 (60-156)||(29978537-29978633)
chr3 (60-156)||(41579744-41579840)
chr3 (95-179)||(46993226-46993310)
chr3 (60-176)||(55385074-55385190)
chr3 (76-123)||(9429885-9429932)
chr3 (93-180)||(11380374-11380461)
chr3 (93-156)||(42804412-42804475)
chr3 (93-156)||(55267398-55267461)
chr3 (60-138)||(42756134-42756212)
chr3 (76-158)||(49196485-49196567)
chr3 (95-180)||(54964917-54965003)
chr3 (13-62)||(8160942-8160991)
chr3 (9-62)||(36817466-36817518)
chr3 (60-181)||(43478850-43478971)
chr3 (99-156)||(52567720-52567777)
chr3 (99-179)||(600603-600683)
chr3 (99-179)||(5138326-5138406)
[»] chr7 (31 HSPs)
chr7 (12-179)||(29593301-29593467)
chr7 (60-180)||(42499342-42499462)
chr7 (9-120)||(618694-618805)
chr7 (60-179)||(47776266-47776385)
chr7 (95-180)||(34142655-34142740)
chr7 (61-179)||(27453615-27453733)
chr7 (9-73)||(18105439-18105503)
chr7 (60-156)||(36186493-36186588)
chr7 (98-181)||(40590549-40590632)
chr7 (98-179)||(43686906-43686987)
chr7 (61-179)||(39460487-39460605)
chr7 (60-167)||(34742415-34742522)
chr7 (59-178)||(45361584-45361703)
chr7 (93-156)||(46860468-46860531)
chr7 (106-181)||(47741712-47741787)
chr7 (12-90)||(47741787-47741864)
chr7 (60-181)||(9494826-9494947)
chr7 (134-179)||(46740634-46740679)
chr7 (13-73)||(30786591-30786651)
chr7 (63-167)||(34139843-34139947)
chr7 (13-73)||(43033040-43033100)
chr7 (13-73)||(45763446-45763506)
chr7 (76-156)||(46863380-46863460)
chr7 (113-181)||(48829895-48829963)
chr7 (93-144)||(36392094-36392145)
chr7 (93-156)||(47060884-47060947)
chr7 (99-181)||(48316319-48316401)
chr7 (93-138)||(21185594-21185639)
chr7 (95-144)||(36185805-36185853)
chr7 (13-62)||(43624093-43624142)
chr7 (9-57)||(42499490-42499538)
[»] chr8 (41 HSPs)
chr8 (9-178)||(31957769-31957937)
chr8 (12-180)||(41744667-41744834)
chr8 (12-181)||(45454338-45454507)
chr8 (181-275)||(42981554-42981648)
chr8 (61-180)||(1114676-1114795)
chr8 (82-179)||(20546787-20546884)
chr8 (76-181)||(35966785-35966890)
chr8 (60-156)||(35962264-35962360)
chr8 (80-181)||(43188005-43188106)
chr8 (95-178)||(39846986-39847069)
chr8 (60-179)||(3641580-3641699)
chr8 (93-179)||(5304197-5304283)
chr8 (95-180)||(34234516-34234601)
chr8 (76-181)||(44052262-44052367)
chr8 (60-156)||(7168045-7168141)
chr8 (13-73)||(7340133-7340193)
chr8 (93-181)||(18441494-18441582)
chr8 (56-179)||(41276876-41276999)
chr8 (76-126)||(41743877-41743927)
chr8 (60-156)||(39601661-39601757)
chr8 (13-123)||(30305516-30305627)
chr8 (76-126)||(20549268-20549318)
chr8 (13-73)||(32378868-32378928)
chr8 (13-73)||(32432823-32432883)
chr8 (60-144)||(39751043-39751126)
chr8 (12-112)||(39752970-39753069)
chr8 (14-57)||(18205868-18205911)
chr8 (60-180)||(43262358-43262474)
chr8 (93-143)||(26455734-26455784)
chr8 (12-62)||(35966696-35966746)
chr8 (62-179)||(41858143-41858260)
chr8 (9-57)||(1114824-1114871)
chr8 (76-112)||(1116224-1116260)
chr8 (60-112)||(2146977-2147028)
chr8 (92-144)||(3395861-3395913)
chr8 (104-180)||(5300680-5300756)
chr8 (78-138)||(7172625-7172685)
chr8 (76-156)||(18205743-18205823)
chr8 (60-120)||(38872950-38873010)
chr8 (76-180)||(39939251-39939355)
chr8 (60-180)||(40077270-40077390)
[»] scaffold0116 (2 HSPs)
scaffold0116 (9-179)||(11235-11404)
scaffold0116 (60-119)||(15975-16034)
[»] chr2 (41 HSPs)
chr2 (60-182)||(27276394-27276516)
chr2 (61-181)||(24749618-24749738)
chr2 (9-123)||(38945752-38945866)
chr2 (60-175)||(1096533-1096648)
chr2 (9-179)||(20951016-20951184)
chr2 (12-181)||(1101025-1101193)
chr2 (84-180)||(1149405-1149501)
chr2 (9-112)||(3803513-3803615)
chr2 (104-179)||(7262970-7263045)
chr2 (60-179)||(34639334-34639453)
chr2 (105-179)||(25964738-25964812)
chr2 (60-156)||(45475397-45475493)
chr2 (93-156)||(41181394-41181457)
chr2 (93-175)||(23786062-23786144)
chr2 (57-183)||(35493358-35493484)
chr2 (9-62)||(7263093-7263146)
chr2 (12-73)||(41183170-41183231)
chr2 (60-120)||(3795330-3795390)
chr2 (13-73)||(18003219-18003279)
chr2 (60-144)||(25184850-25184933)
chr2 (93-156)||(19187276-19187339)
chr2 (99-178)||(29093892-29093971)
chr2 (93-143)||(24512137-24512187)
chr2 (12-57)||(435424-435469)
chr2 (60-181)||(2917615-2917736)
chr2 (12-49)||(41008874-41008911)
chr2 (13-73)||(41560070-41560131)
chr2 (13-73)||(213399-213459)
chr2 (60-180)||(7189971-7190090)
chr2 (13-73)||(10624412-10624472)
chr2 (60-156)||(19186704-19186800)
chr2 (60-156)||(35490637-35490733)
chr2 (9-57)||(39794044-39794092)
chr2 (9-48)||(27276321-27276360)
chr2 (93-156)||(43493310-43493373)
chr2 (128-179)||(45428550-45428601)
chr2 (13-67)||(5334634-5334688)
chr2 (60-144)||(435312-435395)
chr2 (60-144)||(23409521-23409605)
chr2 (12-60)||(43950190-43950238)
chr2 (76-176)||(45137469-45137569)
[»] chr4 (37 HSPs)
chr4 (60-179)||(9889928-9890047)
chr4 (61-180)||(41023319-41023438)
chr4 (61-179)||(50274694-50274812)
chr4 (93-180)||(56138180-56138267)
chr4 (60-181)||(50278818-50278939)
chr4 (12-181)||(4768610-4768779)
chr4 (58-167)||(37394194-37394303)
chr4 (60-180)||(8109324-8109444)
chr4 (114-179)||(19073713-19073778)
chr4 (76-164)||(37395227-37395316)
chr4 (60-164)||(16984181-16984285)
chr4 (50-112)||(3403848-3403910)
chr4 (59-180)||(1044538-1044659)
chr4 (99-180)||(16983455-16983536)
chr4 (59-179)||(1041869-1041989)
chr4 (97-165)||(56140689-56140757)
chr4 (60-123)||(15995712-15995775)
chr4 (60-123)||(19069177-19069240)
chr4 (13-123)||(49566422-49566533)
chr4 (9-62)||(15999743-15999796)
chr4 (63-156)||(39588049-39588142)
chr4 (76-179)||(9491295-9491392)
chr4 (9-57)||(9890075-9890123)
chr4 (9-57)||(19073599-19073647)
chr4 (92-156)||(37959772-37959836)
chr4 (60-123)||(15999819-15999882)
chr4 (93-156)||(49572953-49573016)
chr4 (58-156)||(21472502-21472600)
chr4 (9-62)||(1087910-1087963)
chr4 (60-156)||(29700322-29700418)
chr4 (14-57)||(18581280-18581323)
chr4 (76-179)||(56304811-56304913)
chr4 (95-180)||(37015864-37015949)
chr4 (12-57)||(44049180-44049225)
chr4 (13-73)||(4975831-4975891)
chr4 (9-57)||(13173315-13173363)
chr4 (97-157)||(51683216-51683276)
[»] scaffold0341 (1 HSPs)
scaffold0341 (61-179)||(17372-17490)
[»] scaffold0361 (2 HSPs)
scaffold0361 (76-179)||(4436-4539)
scaffold0361 (10-62)||(4345-4397)
[»] scaffold0494 (2 HSPs)
scaffold0494 (60-180)||(764-884)
scaffold0494 (9-62)||(933-986)
[»] chr6 (25 HSPs)
chr6 (9-123)||(18347031-18347145)
chr6 (76-179)||(31768687-31768790)
chr6 (76-179)||(29065674-29065777)
chr6 (76-179)||(29074687-29074790)
chr6 (76-179)||(29079451-29079554)
chr6 (76-179)||(29107260-29107363)
chr6 (9-73)||(13388651-13388715)
chr6 (60-181)||(28362751-28362875)
chr6 (60-156)||(18610226-18610321)
chr6 (76-179)||(29061230-29061333)
chr6 (14-156)||(23985955-23986097)
chr6 (9-73)||(28249951-28250015)
chr6 (60-153)||(18606005-18606097)
chr6 (13-73)||(1612694-1612754)
chr6 (56-156)||(13401443-13401543)
chr6 (76-112)||(31146374-31146410)
chr6 (93-156)||(12784010-12784073)
chr6 (60-179)||(29076343-29076462)
chr6 (60-179)||(29109876-29109995)
chr6 (60-179)||(29111316-29111435)
chr6 (14-73)||(31146439-31146498)
chr6 (12-73)||(18606110-18606171)
chr6 (111-156)||(26702730-26702775)
chr6 (60-144)||(2050998-2051081)
chr6 (76-164)||(23958839-23958927)
[»] scaffold0260 (1 HSPs)
scaffold0260 (13-123)||(11770-11880)
[»] scaffold0176 (2 HSPs)
scaffold0176 (95-180)||(3580-3665)
scaffold0176 (63-167)||(768-872)
[»] scaffold0184 (1 HSPs)
scaffold0184 (76-180)||(17964-18068)
[»] scaffold0078 (1 HSPs)
scaffold0078 (76-180)||(54776-54880)
[»] scaffold0201 (1 HSPs)
scaffold0201 (59-156)||(22360-22457)
[»] scaffold0012 (2 HSPs)
scaffold0012 (61-182)||(232479-232600)
scaffold0012 (115-179)||(232897-232961)
[»] scaffold0219 (1 HSPs)
scaffold0219 (12-152)||(15664-15804)
[»] scaffold0794 (1 HSPs)
scaffold0794 (12-73)||(5337-5398)
[»] scaffold0038 (1 HSPs)
scaffold0038 (9-73)||(50113-50177)
[»] scaffold0744 (1 HSPs)
scaffold0744 (9-62)||(367-420)
[»] scaffold1379 (1 HSPs)
scaffold1379 (76-164)||(470-558)
[»] scaffold0340 (1 HSPs)
scaffold0340 (89-156)||(1229-1296)
[»] scaffold0513 (1 HSPs)
scaffold0513 (60-118)||(8194-8252)


Alignment Details
Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 46)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 27867789 - 27867959
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagtta 108  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  27867789 gaagaaaatagtgtgtagggggagcaggtggttgtttcatcggatgaaacattttcctcggcagtaaactgcagccggaattcaaattcctcggcagtta 27867888  T
Q  109 actgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  27867889 actgccgagggggtaaaatcgtattttactagtgtggcacagccttatcacatgtgggaacaacaattctc 27867959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 76 - 179
Target Start/End: Complemental strand, 1035221 - 1035118
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaat 175  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| |||||| |||||||    
T  1035221 actgcagccgaaattcaaattcctcggcagttaactgccgagggggtaaaatcgtattttattagtgtggcacagccttatcacacgtgggaacaacaat 1035122  T
Q  176 tctc 179  Q
    ||||    
T  1035121 tctc 1035118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 13568044 - 13568214
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagtta 108  Q
    ||||||||||||||||||| |||||| || | ||||||||| ||||||| ||||||||| |||||  |||||||||||| ||||||||||||||||||||    
T  13568044 gaagaaaatagtgtgtaggtggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcagccggatttcaaattcctcggcagtta 13568143  T
Q  109 actgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    |||  ||| ||||||||| |||  |||||| || || |||||||||||   |||||||| |||||||||||    
T  13568144 actaccgatggggtaaaaacgtcatttactcgtatggcacagccttatgtaatgtgggaacaacaattctc 13568214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 60 - 181
Target Start/End: Original strand, 39743168 - 39743289
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  ||||||| || | ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||     
T  39743168 ttttcctcggcagttaactgcagtcgaatttcaaattcctcggcagttaactgtcgagggggcaaaatcatattttactagtgtggcacagccttatcaa 39743267  T
Q  160 atgtgggagcaacaattctctt 181  Q
    |||||||| |||||||||||||    
T  39743268 atgtgggaacaacaattctctt 39743289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 76 - 182
Target Start/End: Complemental strand, 28387306 - 28387196
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtg----acacagccttatcacatgtgggagcaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    | | |||||||| | |||||||| ||     
T  28387306 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtggcatatatagccttattaaatgtgggaacat 28387207  T
Q  172 caattctcttc 182  Q
    |||||||||||    
T  28387206 caattctcttc 28387196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 7021827 - 7021926
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagtta 108  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||| |||||  |||||||||||| |||||||||||| |||||||    
T  7021827 gaagaaaatagtgtgtagggggagcaggtggctgtttcatcggatgaaacattttcctcggcagttaactgcagccggatttcaaattcctcagcagtta 7021926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 25897115 - 25897218
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaat 175  Q
    |||||||||||| |||||||||||||| ||||||||| ||| ||||||||||  ||||||||||||||| |||| ||||||||||||||||| |||||||    
T  25897115 actgcagccggagttcaaattcctcggtagttaactgccgaaggggtaaaataatattttactagtgtggcacaaccttatcacatgtgggaacaacaat 25897214  T
Q  176 tctc 179  Q
    ||||    
T  25897215 tctc 25897218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 37820823 - 37820920
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagt 106  Q
    |||||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| |||||  |||||||||||| ||||||||||||||||||    
T  37820823 gaagaaaatagtgtgtagggggagcaggtagctgtttcatcggatgaaacattttcctcggcagttaactgcagccggatttcaaattcctcggcagt 37820920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 60 - 176
Target Start/End: Complemental strand, 34122577 - 34122461
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  |||||||||||| |||||||||||||||||||||||| ||| |||| ||||||||||||||||| |||| |||| ||||||||     
T  34122577 ttttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgaaggggcaaaatcgtattttactaatgtggcacaaccttatcaa 34122478  T
Q  160 atgtgggagcaacaatt 176  Q
    || ||||| ||||||||    
T  34122477 atatgggaacaacaatt 34122461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 59 - 180
Target Start/End: Original strand, 17966905 - 17967026
Alignment:
Q  59 attttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatca 158  Q
    ||||||||| | |||  ||||||| |||| ||  |||| ||||||||||||||| ||||||||||||||||||||||||||||||  | |||||||||||    
T  17966905 attttcctcggtagttaactgcagtcggatttttaatttctcggcagttaactgccgagggggtaaaatcgtattttactagtgtttctcagccttatca 17967004  T
Q  159 catgtgggagcaacaattctct 180  Q
     |||||||| ||||||||||||    
T  17967005 aatgtgggaacaacaattctct 17967026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 76 - 180
Target Start/End: Complemental strand, 41798855 - 41798751
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaat 175  Q
    |||||||||||| ||||||||| || ||||||||||| |||||||| |||||| ||||||||||||||| ||| |||||||||  ||||||| |||||||    
T  41798855 actgcagccggatttcaaattcttcagcagttaactgccgagggggcaaaatcatattttactagtgtggcacggccttatcaattgtgggaacaacaat 41798756  T
Q  176 tctct 180  Q
    |||||    
T  41798755 tctct 41798751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 34123971 - 34124073
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaat 175  Q
    |||||||||||| |||||||| |||| |||||||||| |||||||| |||||||||||||||| ||||| |||| |||||| | |||||||| |||||||    
T  34123971 actgcagccggatttcaaatttctcgacagttaactgccgagggggcaaaatcgtattttactggtgtggcacaaccttattaaatgtgggaacaacaat 34124070  T
Q  176 tct 178  Q
    |||    
T  34124071 tct 34124073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 34077844 - 34077762
Alignment:
Q  95 ttcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattc 177  Q
    |||||||||| ||||||  ||||||||||||||||||||||| ||||||| |||| ||||||| || |||||| |||||||||    
T  34077844 ttcctcggcaattaactaccgagggggtaaaatcgtattttattagtgtggcacaaccttatctcacgtgggaacaacaattc 34077762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 1397386 - 1397486
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaat 175  Q
    |||||||||||| ||| |||||||| ||||||||||| |||||||| ||||  |||  ||||| ||||| |||| |||||||| |||||||| |||||||    
T  1397386 actgcagccggatttctaattcctcagcagttaactgccgagggggcaaaaatgtaaattactcgtgtgccacaaccttatcaaatgtgggaacaacaat 1397485  T
Q  176 t 176  Q
    |    
T  1397486 t 1397486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 42942510 - 42942590
Alignment:
Q  99 tcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    |||||||||||||| | ||||||||||| ||||||||||| ||||  | ||||||||||| |||||||| |||||||||||    
T  42942510 tcggcagttaactgccaagggggtaaaagcgtattttacttgtgtttctcagccttatcaaatgtgggaacaacaattctc 42942590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 8702218 - 8702301
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgt 143  Q
    ||||||||||||||  ||||||| | || ||  ||||||||||||||||||||||||||| | |||||||||||||||| ||||    
T  8702218 ttttcctcagcagttaactgcagtcagatttttaattcctcggcagttaactgtcgagggagcaaaatcgtattttacttgtgt 8702301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 41799803 - 41799906
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaat 175  Q
    ||||||||  || ||| |||||||| |||||||||||||||||||| ||||  |||  ||||| ||||| ||||| ||||||| |||||||| |||||||    
T  41799803 actgcagctagatttctaattcctcagcagttaactgtcgagggggcaaaaaagtaaattactcgtgtgtcacagtcttatcaaatgtgggaacaacaat 41799902  T
Q  176 tctc 179  Q
    ||||    
T  41799903 tctc 41799906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 34077897 - 34077839
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctc 67  Q
    |||||||||||||||||||||||||| |||  ||||||||||||||||| |||||||||    
T  34077897 gaagaaaatagtgtgtagggggagcaggtgactgtttcatcggatgaaacattttcctc 34077839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 175
Target Start/End: Complemental strand, 17965902 - 17965787
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  ||||||| || | ||  ||||||||| || ||||||| ||||||| |||||||||||||||||||||   | |||||||||||     
T  17965902 ttttcctcggcagttaactgcagtcgaatttttaattcctcgacaattaactgccgaggggataaaatcgtattttactagtgattctcagccttatcaa 17965803  T
Q  160 atgtgggagcaacaat 175  Q
    | |||||| |||||||    
T  17965802 aagtgggaacaacaat 17965787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 14279950 - 14279896
Alignment:
Q  13 aaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctc 67  Q
    |||||||||||||||||||||| || | ||||||||||||||||| |||||||||    
T  14279950 aaaatagtgtgtagggggagcaggtagctgtttcatcggatgaaacattttcctc 14279896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 28886362 - 28886420
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctc 67  Q
    |||||||||||||||||||||||||| || | ||||||||| ||||||| |||||||||    
T  28886362 gaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctc 28886420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 1035313 - 1035260
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattt 62  Q
    |||||||||||||||||||||||||| |||| ||||||||| ||||||| ||||    
T  1035313 gaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaacattt 1035260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 18538355 - 18538448
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagcct 153  Q
    |||||||| |||||  |||||||||||  ||  ||||||||| || ||||||| |||||||| |||||||||||||||| ||||| | ||||||    
T  18538355 ttttcctcggcagttaactgcagccggtttttgaattcctcgacaattaactgccgagggggcaaaatcgtattttacttgtgtgcctcagcct 18538448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 25897023 - 25897076
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattt 62  Q
    ||||||||||| |||||||||||||| |||| ||||||||||||||||| ||||    
T  25897023 gaagaaaatagcgtgtagggggagcaggtggctgtttcatcggatgaaacattt 25897076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 28388539 - 28388635
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||| |||||  |||||||| ||| ||||||||||||||||| |||||| |||||||| ||||  |||   |||| ||||| |||||||||||    
T  28388539 ttttcctcggcagttaactgcagctggatttcaaattcctcggcagctaactgccgagggggcaaaagagtaaaatactcgtgtggcacagccttat 28388635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 43094022 - 43093942
Alignment:
Q  99 tcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    ||||||||||||||| || ||||||||| |||  |||||| ||||||||||||||||||| || ||  | |||||||||||    
T  43094022 tcggcagttaactgttgaaggggtaaaaacgtcatttactcgtgtgacacagccttatcaaatatgtaaacaacaattctc 43093942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 164
Target Start/End: Original strand, 43094596 - 43094700
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  |||||||||||| ||| ||  | |||||||||||||||||| ||||||||| |||  |||||| ||||| || | ||||||||     
T  43094596 ttttcctcggcagttaactgcagccggatttctaaaacttcggcagttaactgtcgatggggtaaaaacgtcatttactcgtgtggcataaccttatcaa 43094695  T
Q  160 atgtg 164  Q
    |||||    
T  43094696 atgtg 43094700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 7017549 - 7017502
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggta 123  Q
    |||||||||||| |||||||||||| |||||||||| |||||||||||    
T  7017549 actgcagccggatttcaaattcctcagcagttaactatcgagggggta 7017502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 179
Target Start/End: Complemental strand, 7757378 - 7757259
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  |||||||||||| ||| ||  | ||||||||||||||||||||||| |||| |||  |||||| ||||| || || |||||       
T  7757378 ttttcctcggcagttaactgcagccggatttctaaaacttcggcagttaactgtcgagggggcaaaaacgtcatttactcgtgtggcatagtcttatgta 7757279  T
Q  160 atgtgggagcaacaattctc 179  Q
    |||||||| || ||||||||    
T  7757278 atgtgggaacagcaattctc 7757259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 21979691 - 21979648
Alignment:
Q  14 aaatagtgtgtagggggagcatgtggatgtttcatcggatgaaa 57  Q
    |||||||||||||||||||||||||| ||||||||| |||||||    
T  21979691 aaatagtgtgtagggggagcatgtggctgtttcatctgatgaaa 21979648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 33995201 - 33995252
Alignment:
Q  93 aattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtg 144  Q
    |||| ||||||||||||||||||||||| |||||| |||||||||| |||||    
T  33995201 aatttctcggcagttaactgtcgaggggataaaattgtattttacttgtgtg 33995252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 179
Target Start/End: Complemental strand, 20192373 - 20192287
Alignment:
Q  93 aattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    ||||| || ||||||||||| ||| |||| |||||||||||||||| ||||| | ||||||||| | |||||  | |||||||||||    
T  20192373 aattcttcagcagttaactgacgaaggggcaaaatcgtattttacttgtgtgcctcagccttatgaaatgtgtcaacaacaattctc 20192287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 28387395 - 28387345
Alignment:
Q  12 gaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattt 62  Q
    ||||||||||||||||||||||| |||| ||||||||| ||||||| ||||    
T  28387395 gaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaacattt 28387345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 42537217 - 42537135
Alignment:
Q  97 cctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    |||||||||||||||| ||| |||| ||||  |||||||||| ||||  | ||||||||||| ||||| || |||||||||||    
T  42537217 cctcggcagttaactgccgatggggcaaaaatgtattttactcgtgtttctcagccttatcaaatgtgtgaacaacaattctc 42537135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 156
Target Start/End: Complemental strand, 25877674 - 25877579
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||| |||||  | |||||||||  ||| |||||||||||| |||| || ||| | ||||||| ||||||||||| |||||||||| ||||||    
T  25877674 ttttcctcggcagttaattgcagccggt-ttcgaattcctcggcatttaattgccgaagtggtaaaaacgtattttactcgtgtgacacaaccttat 25877579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 30611259 - 30611171
Alignment:
Q  93 aattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctctt 181  Q
    |||| ||||| ||||||||| | |||||| |||| || |||||||| ||||  | ||||||||||| ||||| || |||||||||||||    
T  30611259 aattgctcggtagttaactgccaagggggcaaaaacgaattttactcgtgtttctcagccttatcaaatgtgtgaacaacaattctctt 30611171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 38860146 - 38860194
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaa 57  Q
    ||||||||||| |||||||||||||| |||| ||||||||| |||||||    
T  38860146 gaagaaaatagagtgtagggggagcaggtggctgtttcatctgatgaaa 38860194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 540977 - 540914
Alignment:
Q  95 ttcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatca 158  Q
    ||||||| |||||||||| ||||| ||  ||||||||||||||||||||  | |||||||||||    
T  540977 ttcctcgacagttaactgccgaggaggctaaatcgtattttactagtgtttctcagccttatca 540914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 3603201 - 3603264
Alignment:
Q  93 aattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    ||||| ||||||||||||||||||||| | |||| |||||||||||  |||| | |||||||||    
T  3603201 aattcttcggcagttaactgtcgagggagcaaaaacgtattttacttatgtgcctcagccttat 3603264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 176
Target Start/End: Original strand, 30887382 - 30887496
Alignment:
Q  62 ttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacat 161  Q
    |||||| |||||  |||||||||||| ||| |||||||  ||||||||||| | |||  | |||| ||||  ||||| ||||| |||| | |||||| ||    
T  30887382 ttcctcggcagttaactgcagccggatttctaattccttagcagttaactgcctaggaagcaaaaacgtaaattactcgtgtgccacaacgttatcaaat 30887481  T
Q  162 gtgggagcaacaatt 176  Q
    |||||| ||||||||    
T  30887482 gtgggaacaacaatt 30887496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 31787571 - 31787501
Alignment:
Q  95 ttcctcggcagtt-aactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtg 164  Q
    ||||||||||||| ||||| |||||||||||||  ||  |||||| ||||| ||||||||||||| |||||    
T  31787571 ttcctcggcagtttaactgccgagggggtaaaaatgtcatttactcgtgtggcacagccttatcaaatgtg 31787501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 34682310 - 34682232
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttact 138  Q
    |||||||| |||||  |||||||||||  ||  ||||||||| |||||||||||| |||| | |||| |||||||||||    
T  34682310 ttttcctcggcagttaactgcagccggtttttgaattcctcgacagttaactgtcaagggagcaaaagcgtattttact 34682232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 11033406 - 11033454
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaa 57  Q
    ||||||||||| |||||||||||||| |||| | ||||||| |||||||    
T  11033406 gaagaaaatagagtgtagggggagcaggtggctatttcatctgatgaaa 11033454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 18310074 - 18310162
Alignment:
Q  93 aattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctctt 181  Q
    ||||||||| ||||||||||  |||| || |||| ||||||||||| ||||| | |||||||||   |||||  | |||||||||||||    
T  18310074 aattcctcgacagttaactgctgaggaggcaaaaacgtattttacttgtgtgcctcagccttatgcaatgtgtcaacaacaattctctt 18310162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 25890031 - 25889951
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    ||||||| |||| ||||||||||||||||||| ||||  ||||||| ||||  |||   |||| ||||| |||||||||||    
T  25890031 actgcagtcggatttcaaattcctcggcagtttactgctgagggggcaaaagagtaaaatacttgtgtggcacagccttat 25889951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 156
Target Start/End: Complemental strand, 41201781 - 41201685
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||| |||||  |||||||||||   |  ||||||||| || |||| ||||||| ||  |||||||||||||||| ||||| | |||||||||    
T  41201781 ttttcctcggcagttaactgcagccggttattgaattcctcgacaattaattgtcgagaggacaaaatcgtattttactcgtgtgcctcagccttat 41201685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 52)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 44465700 - 44465530
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagtta 108  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||| |||||    
T  44465700 gaagaaaatagtgtgtagggggagcaggtggctgtttcatcggatgaaacattttcctcggcagtaaactgcagccggaattcaaattcctcggtagtta 44465601  T
Q  109 actgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    |||| |||||||||||||||||||||||||||| || |||| ||||||||||||||||| |||||||||||    
T  44465600 actgccgagggggtaaaatcgtattttactagtatggcacaaccttatcacatgtgggaacaacaattctc 44465530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 23913960 - 23913791
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagtta 108  Q
    |||||||||||||||||||||||||| |||| ||||||||| ||||||| |||| ||||||||||  ||||||||||||||||||||||||||| |||||    
T  23913960 gaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaacattt-cctcagcagttaactgcagccggaattcaaattcctcggtagtta 23913862  T
Q  109 actgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    ||||  |||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||    
T  23913861 actgctgagggggtaaaatcgtattttactagtgtggcacaaccttatcacatgtgggaacaacaattctc 23913791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 5078044 - 5077875
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagtta 108  Q
    |||||||||||||||||||||||||| |||| ||||||||| ||||||| |||| |||| |||||  ||||||| |||| |||||||| ||| |||||||    
T  5078044 gaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaacattt-cctcggcagttaactgcagtcggatttcaaatttctcagcagtta 5077946  T
Q  109 actgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    |||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||    
T  5077945 actgccgagggggtaaaatcgtattttactggtgtggcacagccttatcacatgtgggaacaacaattctc 5077875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 30905873 - 30905705
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagtta 108  Q
    |||||||||||||||||||||| ||| |||| ||||||||| ||||||| |||  |||| |||||  |||||||||||| |||||||| |||||||||||    
T  30905873 gaagaaaatagtgtgtaggggg-gcaggtggctgtttcatctgatgaaacattc-cctcggcagttaactgcagccggatttcaaatttctcggcagtta 30905776  T
Q  109 actgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    |||| ||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| || ||||||||    
T  30905775 actgccgaggggataaaatcgtattttactggtgtggcacagccttatcacatgtgggaacagcaattctc 30905705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 61 - 179
Target Start/End: Original strand, 6562182 - 6562300
Alignment:
Q  61 tttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcaca 160  Q
    ||||||| |||||  |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||    
T  6562182 tttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgagggggtaaaatcgtattttactagtgtggcacaaccttatcaca 6562281  T
Q  161 tgtgggagcaacaattctc 179  Q
    ||||||| || ||||||||    
T  6562282 tgtgggaacagcaattctc 6562300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 41453942 - 41453831
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagtta 108  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||| |||||  |||||||||||| ||||||||||||||||||||    
T  41453942 gaagaaaatagtgtgtagggggagcaggtggctgtttcatcggatgaaacattttcctcggcagttaactgcagccggatttcaaattcctcggcagtta 41453843  T
Q  109 actgtcgagggg 120  Q
    |||  |||||||    
T  41453842 actaccgagggg 41453831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 20349557 - 20349447
Alignment:
Q  13 aaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactg 112  Q
    |||||||||||||||||||||| || | ||||||||||||||||| ||||||||| |||||  |||||||||||| |||||||||||||| |||||||||    
T  20349557 aaaatagtgtgtagggggagcaggtagctgtttcatcggatgaaacattttcctcggcagttaactgcagccggatttcaaattcctcggtagttaactg 20349458  T
Q  113 tcgagggggta 123  Q
     |||| |||||    
T  20349457 ccgagagggta 20349447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 29356634 - 29356732
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagtt 107  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||| |||||  |||||||| ||| |||||||||||||||||||    
T  29356634 gaagaaaatagtgtgtagggggagcaggtggctgtttcatcggatgaaacattttcctcggcagttaactgcagctggatttcaaattcctcggcagtt 29356732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 37014969 - 37014884
Alignment:
Q  94 attcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||| | |||||| |||||||| |||||||||||    
T  37014969 attcctcggcagttaactgtcgagggggcaaaatcgtattttactagtgtgccacaacattatcaaatgtgggaacaacaattctc 37014884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 179
Target Start/End: Original strand, 9711671 - 9711790
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  |||||  ||||| ||| ||||||||||||||||||||  || |||| |||||||||||||||||||||| |||| ||||||||     
T  9711671 ttttcctcggcagttaactgcgaccggatttctaattcctcggcagttaactgctgatggggcaaaatcgtattttactagtgtgccacaaccttatcaa 9711770  T
Q  160 atgtgggagcaacaattctc 179  Q
    |||||||| |||||||||||    
T  9711771 atgtgggaacaacaattctc 9711790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 48751446 - 48751549
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaat 175  Q
    |||||||||||| ||  ||||||||||||||| | || ||||||||||||||||||||||||||||||  | ||||||||||| |||||||| || ||||    
T  48751446 actgcagccggatttttaattcctcggcagttcagtgccgagggggtaaaatcgtattttactagtgtttctcagccttatcaaatgtgggaacatcaat 48751545  T
Q  176 tctc 179  Q
    ||||    
T  48751546 tctc 48751549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 59 - 179
Target Start/End: Complemental strand, 27485113 - 27484993
Alignment:
Q  59 attttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatca 158  Q
    ||||| ||| |||||  |||||||||||| ||  ||||||| |||||||||||| |||||||| |||| ||||||||||| ||||  | |||||||||||    
T  27485113 atttttctcggcagttaactgcagccggatttttaattcctaggcagttaactgccgagggggcaaaaacgtattttactcgtgtttctcagccttatca 27485014  T
Q  159 catgtgggagcaacaattctc 179  Q
     |||||||| || ||||||||    
T  27485013 aatgtgggaacagcaattctc 27484993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 179
Target Start/End: Original strand, 51289980 - 51290099
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  |||||| ||||| ||  |||||||| | ||||||||| ||||||||||||||| ||||||||||||||  | |||||||||||     
T  51289980 ttttcctcggcagttaactgcaaccggatttttaattcctcagtagttaactgccgagggggtaaaatcttattttactagtgtttctcagccttatcaa 51290079  T
Q  160 atgtgggagcaacaattctc 179  Q
    |  ||||| |||||||||||    
T  51290080 acatgggaacaacaattctc 51290099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 51666659 - 51666754
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    ||||||||||||||  |||||||||| | ||| |||| ||||||| ||||||| |||||||| |||| ||||||||||| |||||||||||| ||||    
T  51666659 ttttcctcagcagttaactgcagccg-atttcgaattactcggcatttaactgccgagggggcaaaagcgtattttactcgtgtgacacagctttat 51666754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 60 - 179
Target Start/End: Original strand, 23276128 - 23276247
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  |||| ||||||| ||  |||||||| ||||||||||| |||||||| |||| ||||||||||| ||||  | |||||||||||     
T  23276128 ttttcctcggcagttaactgtagccggatttttaattcctcagcagttaactgccgagggggcaaaaacgtattttactcgtgtttctcagccttatcaa 23276227  T
Q  160 atgtgggagcaacaattctc 179  Q
    ||| | || |||||||||||    
T  23276228 atgcgtgaacaacaattctc 23276247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 180
Target Start/End: Complemental strand, 51288939 - 51288820
Alignment:
Q  61 tttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcaca 160  Q
    ||||||| |||||  |||||||||||| ||| |||||||||| ||||||||| |||||||| |||| | ||  ||| | ||||| ||||||||||||| |    
T  51288939 tttcctccgcagttaactgcagccggatttctaattcctcggtagttaactgccgagggggcaaaaacataaattattcgtgtgccacagccttatcaaa 51288840  T
Q  161 tgtgggagcaacaattctct 180  Q
    |||||||  | |||||||||    
T  51288839 tgtgggaatagcaattctct 51288820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 182
Target Start/End: Complemental strand, 11183239 - 11183117
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  |||||||||||| ||  |||||||| ||||||||||||| |||| | |||| ||||||||||| || |  | |||||||||||     
T  11183239 ttttcctcggcagttaactgcagccggatttttaattcctcagcagttaactgtcaagggagcaaaaacgtattttactcgtatttctcagccttatcaa 11183140  T
Q  160 atgtgggagcaacaattctcttc 182  Q
    |||||  | ||||||||||||||    
T  11183139 atgtgtcaacaacaattctcttc 11183117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 182
Target Start/End: Complemental strand, 46973257 - 46973135
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  |||||||||||  ||  |||||||||||||||||||| | |||||| |||||||||||||||| ||||| | |||||| || |     
T  46973257 ttttcctcggcagttaactgcagccggtttttgaattcctcggcagttaactgccaagggggcaaaatcgtattttacttgtgtgtctcagcctaatgaa 46973158  T
Q  160 atgtgggagcaacaattctcttc 182  Q
    |||||  | |||||||| |||||    
T  46973157 atgtgtcaacaacaattttcttc 46973135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 6557969 - 6557905
Alignment:
Q  59 attttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggta 123  Q
    ||||||||| |||||  |||||||||| | |||||||||||||||||||||||| ||||||||||    
T  6557969 attttcctcggcagttaactgcagccgaatttcaaattcctcggcagttaactgccgagggggta 6557905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 15047412 - 15047348
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    |||||||||||||| ||||||||||| || | ||||||||||||||||| ||||||||| |||||    
T  15047412 gaagaaaatagtgtatagggggagcaggtagctgtttcatcggatgaaacattttcctcggcagt 15047348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 19054096 - 19054016
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||||||  ||  ||||||||||||||||||||||||||||| |||| ||||||||||| ||||  | |||||||||    
T  19054096 actgcagccggtttttgaattcctcggcagttaactgtcgagggggcaaaaacgtattttactcgtgtttctcagccttat 19054016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 31945808 - 31945868
Alignment:
Q  13 aaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    |||||||||||||||||||||| || | ||||||||||||||||| ||||||||| |||||    
T  31945808 aaaatagtgtgtagggggagcaggtagctgtttcatcggatgaaacattttcctcggcagt 31945868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 44470031 - 44470091
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggg 120  Q
    |||||||| |||||  |||||||||||| |||||||||||||||||||||||| |||||||    
T  44470031 ttttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgagggg 44470091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 30910023 - 30910086
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggta 123  Q
    |||||||| |||||  |||||||||||| ||||||||||||| |||||||||| ||||||||||    
T  30910023 ttttcctcggcagttaactgcagccggatttcaaattcctcgacagttaactgccgagggggta 30910086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 179
Target Start/End: Original strand, 52805573 - 52805672
Alignment:
Q  80 cagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    |||||||| ||||||||| |||||||||||||| |||||||| ||||   ||  ||||| ||||| |||| |||||||| |||||||| || ||||||||    
T  52805573 cagccggatttcaaattcgtcggcagttaactgccgagggggcaaaaaaataaattacttgtgtgccacaaccttatcaaatgtgggaacatcaattctc 52805672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 95 - 181
Target Start/End: Complemental strand, 35521632 - 35521546
Alignment:
Q  95 ttcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctctt 181  Q
    |||||||||||||||||| |||| ||| |||||||||||||||| ||||| | ||||||||| | |||||  | |||||||| ||||    
T  35521632 ttcctcggcagttaactgccgagagggcaaaatcgtattttacttgtgtgcctcagccttataaaatgtgtcaacaacaattttctt 35521546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 182
Target Start/End: Original strand, 41804053 - 41804175
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  ||||||| |||  ||  |||||||||||||||||||| ||| |||| |||| ||||||||||| ||||| | ||||||||| |     
T  41804053 ttttcctcggcagttaactgcagtcggtttttgaattcctcggcagttaactgccgaaggggcaaaagcgtattttacttgtgtgcctcagccttataaa 41804152  T
Q  160 atgtgggagcaacaattctcttc 182  Q
    |||||  | |||||||| |||||    
T  41804153 atgtgtcaacaacaattttcttc 41804175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 52802183 - 52802117
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaa 126  Q
    |||||||| |||||  |||||||||||| |||||||||||||||||||||||| |||| ||| ||||    
T  52802183 ttttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgagagggcaaaa 52802117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 15047333 - 15047276
Alignment:
Q  62 ttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgaggg 119  Q
    |||||| |||||  |||||||||||| |||||||||||||||||||||||| ||||||    
T  15047333 ttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgaggg 15047276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 156
Target Start/End: Complemental strand, 46141835 - 46141739
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||| |||||  |||||||||||   |  |||||||||||||||||||| |||| ||| |||||||||||||||| ||||  | |||||||||    
T  46141835 ttttcctcggcagttaactgcagccggttattgaattcctcggcagttaactgccgagagggcaaaatcgtattttacttgtgtacctcagccttat 46141739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 4516130 - 4515995
Alignment:
Q  14 aaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgt 113  Q
    ||||||||||||||||||||| |||| |||||||||  || ||| ||  | ||| |||||  |||||||||||  ||  ||||||||||||||||||||     
T  4516130 aaatagtgtgtagggggagcaggtggctgtttcatctaataaaacataattctcggcagttaactgcagccggtttttgaattcctcggcagttaactgc 4516031  T
Q  114 c-----gagggggtaaaatcgtattttactagtgtg 144  Q
    |     ||||||  |||||||||||||||| |||||    
T  4516030 cctgccgaggggacaaaatcgtattttacttgtgtg 4515995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 8459037 - 8458943
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagcctta 155  Q
    |||||||| |||||  ||||||| |||  |||||||||| ||||||||||||   |||||| ||||| ||||||||||| |||||||||| |||||    
T  8459037 ttttcctcggcagttaactgcagtcggt-ttcaaattccacggcagttaacttctgaggggataaaaacgtattttactcgtgtgacacaacctta 8458943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 13629521 - 13629470
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatat 60  Q
    ||||||||||| |||||||||||||| |||| ||||||||| ||||||||||    
T  13629521 gaagaaaatagagtgtagggggagcaggtggctgtttcatctgatgaaatat 13629470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 23359385 - 23359435
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaa 126  Q
    |||||||||||| |||||||||||||||| ||||||| |||||||| ||||    
T  23359385 actgcagccggatttcaaattcctcggcaattaactgccgagggggcaaaa 23359435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 9711597 - 9711658
Alignment:
Q  12 gaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    ||||||||| ||||||||||||| |||| ||||||||| ||||||| || |||||| |||||    
T  9711597 gaaaatagtatgtagggggagcaggtggctgtttcatctgatgaaacatattcctcggcagt 9711658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 176
Target Start/End: Original strand, 19499132 - 19499246
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  |||||||||| | || ||||| ||| |||||||||||||||  ||| |||| ||||||||||| ||||| | ||| ||||| |     
T  19499132 ttttcctcggcagttaactgcagccgaattttaaatttctcagcagttaactgtcga--gggcaaaaacgtattttacttgtgtgtctcagtcttatgat 19499229  T
Q  160 atgtgggagcaacaatt 176  Q
    ||||| || ||||||||    
T  19499230 atgtgcgaacaacaatt 19499246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 29438082 - 29438159
Alignment:
Q  102 gcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    ||||||||||| |||||||| |||| ||||  ||| | ||||| |||| |||||||| |||||||| |||||||||||    
T  29438082 gcagttaactgccgagggggcaaaaacgtaaattattcgtgtgccacaaccttatcaaatgtgggaacaacaattctc 29438159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 3948409 - 3948469
Alignment:
Q  13 aaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    |||||||||||||||||||||| || | |||||||||| |||||| |||| |||| |||||    
T  3948409 aaaatagtgtgtagggggagcaggtagctgtttcatcgtatgaaacatttccctcggcagt 3948469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 3983213 - 3983153
Alignment:
Q  13 aaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    |||||||||||||||||||||| || | |||||||||| |||||| |||| |||| |||||    
T  3983213 aaaatagtgtgtagggggagcaggtagctgtttcatcgtatgaaacatttccctcggcagt 3983153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 23272869 - 23272781
Alignment:
Q  93 aattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctctt 181  Q
    |||||||||||||||||||| |||||||  |||| ||||||||||| || |  | || |||||||| ||||  || |||||||||||||    
T  23272869 aattcctcggcagttaactggcgaggggaaaaaaacgtattttactcgtatttctcatccttatcaaatgtatgaacaacaattctctt 23272781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 38689968 - 38689889
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||||||  ||| ||||||||| || ||||||  ||||||||||||| |||||||||||  ||||||||||| ||||    
T  38689968 actgcagccggt-ttcgaattcctcgacatttaactaccgagggggtaaaagcgtattttactcatgtgacacagctttat 38689889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 38776073 - 38776133
Alignment:
Q  13 aaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    |||||||||||||||||||||| || | |||||||||| |||||| |||| |||| |||||    
T  38776073 aaaatagtgtgtagggggagcaggtagctgtttcatcgtatgaaacatttccctcggcagt 38776133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 44621061 - 44621109
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaa 57  Q
    ||||||||||| |||||||||||||| |||| ||||||||| |||||||    
T  44621061 gaagaaaatagagtgtagggggagcaggtggctgtttcatctgatgaaa 44621109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 180
Target Start/End: Complemental strand, 44596909 - 44596794
Alignment:
Q  65 ctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtg 164  Q
    |||||||||  |||||| ||||| ||| ||  | |||||||||||||| |||| ||| |||| |||  |||||| ||||| ||||| |||||   |||||    
T  44596909 ctcagcagttaactgcaaccggatttctaaaacttcggcagttaactgccgagcgggcaaaaacgtcatttactcgtgtggcacagtcttatgtaatgtg 44596810  T
Q  165 ggagcaacaattctct 180  Q
    ||| ||||||||||||    
T  44596809 ggaacaacaattctct 44596794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 46973328 - 46973285
Alignment:
Q  14 aaatagtgtgtagggggagcatgtggatgtttcatcggatgaaa 57  Q
    ||||||||||||||||||||| |||| ||||||||| |||||||    
T  46973328 aaatagtgtgtagggggagcaggtggctgtttcatctgatgaaa 46973285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 13173847 - 13173793
Alignment:
Q  102 gcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    ||||||||||| |||||||| ||||| |||||||||| ||||| | |||||||||    
T  13173847 gcagttaactgccgagggggcaaaatagtattttacttgtgtgcctcagccttat 13173793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 138
Target Start/End: Original strand, 13178152 - 13178230
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttact 138  Q
    ||||||||||||||  |||||||| ||  || ||||| ||| ||||||||||| |||||| | |||| |||||||||||    
T  13178152 ttttcctcagcagttaactgcagctggtttttaaatttctcagcagttaactgccgagggagcaaaaacgtattttact 13178230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 42570157 - 42570099
Alignment:
Q  98 ctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||| ||||||||||||||||  |||||||||| ||||||| ||||| | |||||||||    
T  42570157 ctcgacagttaactgtcgaggatgtaaaatcgtgttttacttgtgtgcctcagccttat 42570099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 6437594 - 6437643
Alignment:
Q  95 ttcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtg 144  Q
    |||||||||||||||||| |||| ||| |||| ||||||||||| |||||    
T  6437594 ttcctcggcagttaactgccgagagggcaaaagcgtattttacttgtgtg 6437643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 8460043 - 8460088
Alignment:
Q  12 gaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaa 57  Q
    |||||||||||||||||| |||| |||| ||||||||| |||||||    
T  8460043 gaaaatagtgtgtaggggaagcaggtggctgtttcatctgatgaaa 8460088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 22397923 - 22397875
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaa 57  Q
    ||||||||||| |||||||||||||| |||| | ||||||| |||||||    
T  22397923 gaagaaaatagagtgtagggggagcaggtggctatttcatctgatgaaa 22397875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 46886446 - 46886526
Alignment:
Q  99 tcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    |||||||||||||| |||||||| |||| |||  |||||| ||||  |||| |||||||| |||||  | |||||||||||    
T  46886446 tcggcagttaactgccgagggggcaaaaacgtcatttactcgtgtagcacaaccttatcaaatgtgtaaacaacaattctc 46886526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 59)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 23443076 - 23443245
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagtta 108  Q
    |||||||||||||||||||||||||| |||| ||||||||| ||||||| ||| || || |||||  |||||||||||||||||||||||||||||||||    
T  23443076 gaagaaaatagtgtgtagggggagcaggtggttgtttcatctgatgaaacattctc-tcggcagttaactgcagccggaattcaaattcctcggcagtta 23443174  T
Q  109 actgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||    
T  23443175 actgccgagggggtaaaatcgtattttactagtgtgtcacagccttatcaaatgtgggaacaacaattctc 23443245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 2745175 - 2745337
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagtta 108  Q
    |||||||||||||||||||||||||| |||| ||||||||| ||||||| |    ||||  ||||  |||||||||| | |||||||||||| |||||||    
T  2745175 gaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaacagac-cctcgacagttaactgcagccgaatttcaaattcctcagcagtta 2745273  T
Q  109 actgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaac 172  Q
    |||  ||||||||||||||||||||||| | |||||||||| ||||||||||||||||| ||||    
T  2745274 actaccgagggggtaaaatcgtattttattggtgtgacacaaccttatcacatgtgggaacaac 2745337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 36817557 - 36817660
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaat 175  Q
    |||||||||||| |||||||||||||| |||||||||  ||||||||||||| |||||||||||||||| |||| ||||||||||||||||| |||||||    
T  36817557 actgcagccggagttcaaattcctcggtagttaactgctgagggggtaaaatagtattttactagtgtggcacaaccttatcacatgtgggaacaacaat 36817656  T
Q  176 tctc 179  Q
    ||||    
T  36817657 tctc 36817660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 61 - 179
Target Start/End: Original strand, 7843038 - 7843156
Alignment:
Q  61 tttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcaca 160  Q
    ||||||| |||||  ||||||| ||||||||||||| ||||||||||||||| ||||||| |||||| ||||||||||| |||| ||||||||||||| |    
T  7843038 tttcctctgcagttaactgcagtcggaattcaaatttctcggcagttaactgccgaggggataaaattgtattttactaatgtggcacagccttatcaaa 7843137  T
Q  161 tgtgggagcaacaattctc 179  Q
    || |||| |||||||||||    
T  7843138 tgagggaacaacaattctc 7843156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 60 - 181
Target Start/End: Original strand, 49219811 - 49219932
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  |||||||||||| ||| |||||||||||||||||||  ||||| || ||||| |||||||||||||||| |||||||||||||     
T  49219811 ttttcctcggcagttaactgcagccggatttctaattcctcggcagttaactaccgaggaggcaaaattgtattttactagtgtggcacagccttatcaa 49219910  T
Q  160 atgtgggagcaacaattctctt 181  Q
    |||| |||||| ||||||||||    
T  49219911 atgtaggagcagcaattctctt 49219932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 60 - 179
Target Start/End: Complemental strand, 7841174 - 7841055
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  | ||||||| || |||||||||||||| |||||| || |||||||| ||||| ||||||||||||||||||||||||||||||     
T  7841174 ttttcctcggcagttaaatgcagccagatttcaaattcctcggtagttaattgccgagggggcaaaattgtattttactagtgtgacacagccttatcaa 7841075  T
Q  160 atgtgggagcaacaattctc 179  Q
    |||||||| ||| |||||||    
T  7841074 atgtgggaacaataattctc 7841055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 50953405 - 50953292
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagtta 108  Q
    |||||||||||||||||||||||||| |||| ||||||||| ||||||||| ||||||| |||||  |||||||||||| |||||||||||  |||||||    
T  50953405 gaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaata-tttcctcggcagttaactgcagccggatttcaaattcctatgcagtta 50953307  T
Q  109 actgtcgagggggta 123  Q
    |||  ||||||||||    
T  50953306 actaccgagggggta 50953292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 60 - 185
Target Start/End: Complemental strand, 41137771 - 41137646
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  |||||||||||| ||||||||||||||||||||||||  || || | |||| | ||||||||||||||| |||| ||||||||     
T  41137771 ttttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgctgatggagcaaaaacatattttactagtgtggcacaaccttatcaa 41137672  T
Q  160 atgtgggagcaacaattctcttctta 185  Q
    |||||||| |||||||||||| ||||    
T  41137671 atgtgggaacaacaattctctactta 41137646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 14398572 - 14398492
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    ||||||||||||||||||||||||||||||||||| | ||||| | ||||||||||   |||| |||||||||||||||||    
T  14398572 actgcagccggaattcaaattcctcggcagttaaccgccgaggagataaaatcgtaaaatactcgtgtgacacagccttat 14398492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 9473943 - 9474010
Alignment:
Q  95 ttcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatg 162  Q
    |||||||||||||||||| | |||| |||||||||||||||||| ||||| |||||||||||||||||    
T  9473943 ttcctcggcagttaactgccaagggagtaaaatcgtattttactggtgtggcacagccttatcacatg 9474010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 179
Target Start/End: Original strand, 48250889 - 48251008
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  ||||||||||||||||||||||||| ||||||||||| |||||||| |||| |||  |||| |  |||| |||| ||||||       
T  48250889 ttttcctcggcagttaactgcagccggaattcaaattcctcagcagttaactgccgagggggcaaaaacgtcatttatttatgtggcacaaccttatgta 48250988  T
Q  160 atgtgggagcaacaattctc 179  Q
    |||||||| |||||||||||    
T  48250989 atgtgggaacaacaattctc 48251008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 13747662 - 13747726
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    ||||||||||| |||||||||||||| |||| ||||||||||||||||| ||||||||| |||||    
T  13747662 gaagaaaatagagtgtagggggagcaggtggctgtttcatcggatgaaacattttcctcggcagt 13747726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 180
Target Start/End: Complemental strand, 46989600 - 46989480
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  ||||||||||||||||||||| ||||| ||||||||| |||| ||| |||| |||  |||||| || ||||||| |||||| |     
T  46989600 ttttcctcggcagttaactgcagccggaattcaaatttctcggtagttaactgccgagagggcaaaaacgtcatttactcgtatgacacaaccttattaa 46989501  T
Q  160 atgtgggagcaacaattctct 180  Q
    |||||  | ||||||||||||    
T  46989500 atgtgtaaacaacaattctct 46989480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 2743451 - 2743391
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggg 120  Q
    |||||||| |||||  |||||||||||| |||||||||||||||||||||||| |||||||    
T  2743451 ttttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgagggg 2743391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 9429792 - 9429856
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    |||||||| ||||||||||||||||| || | ||||||||||||||||| ||||||||| |||||    
T  9429792 gaagaaaacagtgtgtagggggagcaggtagttgtttcatcggatgaaacattttcctcggcagt 9429856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 13743346 - 13743286
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggg 120  Q
    |||||||| |||||  |||||||||||| |||||||||||||||||||||||| |||||||    
T  13743346 ttttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgagggg 13743286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 66917 - 66850
Alignment:
Q  97 cctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtg 164  Q
    |||||||||||||||| |||||||| |||| ||||||||||| ||||| | ||||||||||| |||||    
T  66917 cctcggcagttaactgccgagggggcaaaagcgtattttactcgtgtgtctcagccttatcaaatgtg 66850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 48250813 - 48250868
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttc 64  Q
    |||||||||||||||||||||||||| |||| ||||||||| ||||||| ||||||    
T  48250813 gaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaacattttc 48250868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 50216890 - 50216993
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaat 175  Q
    |||||||||||| ||  |||||||||||||||||||| | | |||| |||| |||   ||||| ||||| |||| |||||||| |||||||| |||||||    
T  50216890 actgcagccggatttttaattcctcggcagttaactgccaatggggcaaaaacgtcaattactcgtgtgccacaaccttatcaaatgtgggaacaacaat 50216989  T
Q  176 tctc 179  Q
    ||||    
T  50216990 tctc 50216993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 93 - 179
Target Start/End: Original strand, 7247913 - 7247999
Alignment:
Q  93 aattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    |||||||||||||||||||| |||||||| |||| ||||||||| | ||||| | ||||||||||  |||||  | |||||||||||    
T  7247913 aattcctcggcagttaactgccgagggggcaaaagcgtattttattcgtgtgcctcagccttatccaatgtgtcaacaacaattctc 7247999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 13747738 - 13747796
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagg 118  Q
    ||||||||||||||  |||||||||||| ||||||||| |||||||||||||| |||||    
T  13747738 ttttcctcagcagttaactgcagccggatttcaaattcatcggcagttaactgccgagg 13747796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 156
Target Start/End: Original strand, 6505922 - 6506067
Alignment:
Q  12 gaaaatagtgtgtagggg-gagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagttaac 110  Q
    ||||||||| |||||||| |||||||||| ||||||||| ||||||| || |||||| |||||  |||||||||||  |   ||||||| ||||||||||    
T  6505922 gaaaatagtatgtaggggggagcatgtggctgtttcatctgatgaaacatattcctcggcagttaactgcagccggtttcttaattccttggcagttaac 6506021  T
Q  111 tgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |   ||||||  |||| ||||  ||||| ||||| | |||||||||    
T  6506022 ttctgaggggacaaaaacgtaaattactcgtgtgcctcagccttat 6506067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 14398664 - 14398611
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattt 62  Q
    |||||||||||||||||||||||||| |||| ||||||||| ||||||| ||||    
T  14398664 gaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaacattt 14398611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 165
Target Start/End: Complemental strand, 34691662 - 34691573
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgg 165  Q
    |||||||||||| ||  | |||||||||||||||||| ||||| || ||||| |||||||||||||||  | |||| |||||| ||||||    
T  34691662 actgcagccggatttttatttcctcggcagttaactgccgaggaggcaaaattgtattttactagtgtttctcagcgttatcaaatgtgg 34691573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 14402990 - 14403086
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||| |||||  ||| | |||||| |||||||||||||||||||||||| |||||||| ||||  |||   |||| ||||| |||||||||||    
T  14402990 ttttcctcggcagttaactaccgccggatttcaaattcctcggcagttaactgccgagggggcaaaagagtaaaatactcgtgtggcacagccttat 14403086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 28611120 - 28611216
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||| |||||  |||||||||||  ||  |||| ||||||||||||||| |||||||| |||||  ||||||||| ||||| | |||||||||    
T  28611120 ttttcctcggcagttaactgcagccggtttttgaatttctcggcagttaactgccgagggggcaaaattatattttacttgtgtgtctcagccttat 28611216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 30947600 - 30947660
Alignment:
Q  13 aaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    |||||||||||||||||||||| || | ||||||||||||||||| |||| |||| |||||    
T  30947600 aaaatagtgtgtagggggagcaggtagctgtttcatcggatgaaacatttccctcggcagt 30947660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 49217101 - 49217045
Alignment:
Q  123 aaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    |||||||||||||||||||||| ||||  ||||||| |||||||| |||||||||||    
T  49217101 aaaatcgtattttactagtgtggcacaatcttatcaaatgtgggaacaacaattctc 49217045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 2432996 - 2433059
Alignment:
Q  93 aattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    ||||||||| |||||||||| ||||||| ||||| ||||||||||| ||||| | |||||||||    
T  2432996 aattcctcgacagttaactgccgaggggataaaagcgtattttactcgtgtgcctcagccttat 2433059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 6740938 - 6740895
Alignment:
Q  80 cagccggaattcaaattcctcggcagttaactgtcgagggggta 123  Q
    |||||||| |||||||||||||||||||||||| ||||||||||    
T  6740938 cagccggatttcaaattcctcggcagttaactgccgagggggta 6740895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 16444725 - 16444674
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatat 60  Q
    ||||||||||| |||||||||||||| |||| ||||||||| ||||||||||    
T  16444725 gaagaaaatagagtgtagggggagcaggtggctgtttcatctgatgaaatat 16444674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 50957686 - 50957749
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggta 123  Q
    |||||||| |||||  |||||||||||| ||||||||||||||||| ||||||  |||||||||    
T  50957686 ttttcctcggcagttaactgcagccggatttcaaattcctcggcagctaactgcagagggggta 50957749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 51696571 - 51696654
Alignment:
Q  96 tcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    ||||||||||||||||  |||||||| ||||  |||  ||||| ||||| ||||||||||||| |||||| | |||||||||||    
T  51696571 tcctcggcagttaactaccgagggggcaaaaaagtaaattactcgtgtgccacagccttatcaaatgtggcaacaacaattctc 51696654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 41803051 - 41802973
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttact 138  Q
    |||||||| |||||  |||||||||||  || |||||| |||||||||||||| |||| ||| |||| |||||||||||    
T  41803051 ttttcctcggcagttaactgcagccggtttttaaattcttcggcagttaactgccgagtgggcaaaaacgtattttact 41802973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 7837722 - 7837661
Alignment:
Q  12 gaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    ||||||||| ||||||||||||| |||  ||||||||| ||||||| || ||||||||||||    
T  7837722 gaaaatagtatgtagggggagcaggtgactgtttcatctgatgaaacatattcctcagcagt 7837661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 181
Target Start/End: Original strand, 19341630 - 19341735
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaat 175  Q
    |||||||||||| ||| |||||||||||||||||||| |||||||  |||| ||||  ||||| ||||| || |||   || | |||||||| ||||||     
T  19341630 actgcagccggatttctaattcctcggcagttaactgccgaggggacaaaaacgtaacttactcgtgtgccatagctaaatgaaatgtgggaacaacaac 19341729  T
Q  176 tctctt 181  Q
    ||||||    
T  19341730 tctctt 19341735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 34694454 - 34694515
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgaggggg 121  Q
    |||| ||| ||||| ||||||||||||| ||| ||||||||| |||||||||| ||||||||    
T  34694454 tttttctcggcagtttactgcagccggatttctaattcctcgacagttaactgccgaggggg 34694515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 3948855 - 3948795
Alignment:
Q  13 aaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    |||||||||||||||||||||| || |  |||||||||||||||| |||| |||| |||||    
T  3948855 aaaatagtgtgtagggggagcaggtagcagtttcatcggatgaaacatttccctcggcagt 3948795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 4002525 - 4002585
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggg 120  Q
    |||||||| |||||  |||||||||||| |||||||||||| | ||||||||| |||||||    
T  4002525 ttttcctcggcagttaactgcagccggatttcaaattcctcagtagttaactgccgagggg 4002585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 29918361 - 29918457
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||| |||||  |||||||||||  ||| ||||  ||||||||||| || |||||||  ||||||||||||||||  |||| | |||||||||    
T  29918361 ttttcctcggcagttaactgcagccggttttcgaattattcggcagttaattgccgaggggccaaaatcgtattttacttatgtgcctcagccttat 29918457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 156
Target Start/End: Complemental strand, 29929479 - 29929383
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||| |||||  | |||||||||  ||  ||||||||  ||||||||||||||||| | |||||| ||||||||| ||||| | |||||||||    
T  29929479 ttttcctcggcagttaattgcagccggtttttgaattcctcaacagttaactgtcgagggagcaaaatcatattttacttgtgtgcctcagccttat 29929383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 29967514 - 29967610
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||| |||||  |||||||||||  ||| ||||  ||||||||||| || |||||||  ||||||||||||||||  |||| | |||||||||    
T  29967514 ttttcctcggcagttaactgcagccggttttcgaattattcggcagttaattgccgaggggccaaaatcgtattttacttatgtgcctcagccttat 29967610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 156
Target Start/End: Complemental strand, 29978633 - 29978537
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||| |||||  | |||||||||  ||  ||||||||  ||||||||||||||||| | |||||| ||||||||| ||||| | |||||||||    
T  29978633 ttttcctcggcagttaattgcagccggtttttgaattcctcaacagttaactgtcgagggagcaaaatcatattttacttgtgtgcctcagccttat 29978537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 41579744 - 41579840
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||| |||||  |||||||||||   |  |||||||| ||| ||||||| |||||||| ||||||||||||||||  |||| | |||||||||    
T  41579744 ttttcctcggcagttaactgcagccggttattgaattcctcagcaattaactgccgagggggaaaaatcgtattttacttatgtgcctcagccttat 41579840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 46993226 - 46993310
Alignment:
Q  95 ttcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    ||||||| |||||||||| |||||||| |||| |||  |||||| || || ||||||||||||| ||||| || || ||||||||    
T  46993226 ttcctcgacagttaactgccgagggggcaaaaacgtcatttactcgtatggcacagccttatcaaatgtgtgaacagcaattctc 46993310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 176
Target Start/End: Complemental strand, 55385190 - 55385074
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  |||||||||||| ||| ||  | |||||||||||||| |||||||| |||| |||   ||||| ||||| |||| ||||||       
T  55385190 ttttcctcggcagttaactgcagccggatttctaaaacttcggcagttaactgccgagggggcaaaaacgtcaattactcgtgtgccacaaccttatgca 55385091  T
Q  160 atgtgggagcaacaatt 176  Q
    |||||||| ||||||||    
T  55385090 atgtgggaacaacaatt 55385074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 9429885 - 9429932
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggta 123  Q
    |||||||||  | |||||||||||||||||||||||| ||||||||||    
T  9429885 actgcagccaaatttcaaattcctcggcagttaactgccgagggggta 9429932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 180
Target Start/End: Complemental strand, 11380461 - 11380374
Alignment:
Q  93 aattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctct 180  Q
    |||||||||||||||||||| ||| |||| |||| ||||||||||| ||||  | |||||| | || |||||  | ||||||||||||    
T  11380461 aattcctcggcagttaactgccgaaggggcaaaaacgtattttactcgtgtttctcagcctaaccaaatgtgtcaacaacaattctct 11380374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 42804475 - 42804412
Alignment:
Q  93 aattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    ||||||||||||||||||| |||||||||  |||  |||||||||| ||||| | |||||||||    
T  42804475 aattcctcggcagttaactatcgagggggctaaagtgtattttacttgtgtgcctcagccttat 42804412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 55267461 - 55267398
Alignment:
Q  93 aattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    ||||| ||||||||||||||||||||||| |||| ||||  ||||| ||||| | |||||||||    
T  55267461 aattcttcggcagttaactgtcgagggggcaaaaacgtaaattactcgtgtgtctcagccttat 55267398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 42756212 - 42756134
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttact 138  Q
    |||||||| |||||  |||||| ||||| ||  ||||||||| ||||||||||  ||||||| |||| |||||||||||    
T  42756212 ttttcctcggcagttaactgcaaccggatttttaattcctcgacagttaactgctgagggggcaaaaacgtattttact 42756134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 49196485 - 49196567
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatca 158  Q
    |||||| ||||| ||  ||||||||| |||||| || ||||||||| |||| ||||||||||| ||||  | |||||||||||    
T  49196485 actgcaaccggatttttaattcctcgacagttagctatcgagggggcaaaaacgtattttactcgtgtttctcagccttatca 49196567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 54964917 - 54965003
Alignment:
Q  95 ttcctcggcagttaactgtcga-gggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctct 180  Q
    ||||||| |||||||| | ||| |||||| ||||||||||||| |||| |  | || |||||||| |||||||| ||||||||||||    
T  54964917 ttcctcgacagttaaccgccgaagggggtcaaatcgtattttattagtatttctcaaccttatcaaatgtgggaacaacaattctct 54965003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 8160942 - 8160991
Alignment:
Q  13 aaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattt 62  Q
    |||||||||||||||||||||| || | |||||||||| |||||| ||||    
T  8160942 aaaatagtgtgtagggggagcaggtagctgtttcatcgtatgaaacattt 8160991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 36817466 - 36817518
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattt 62  Q
    ||||||||||||||||| |||||||| |||| ||||||||| ||||||| ||||    
T  36817466 gaagaaaatagtgtgta-ggggagcaggtggctgtttcatccgatgaaacattt 36817518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 181
Target Start/End: Original strand, 43478850 - 43478971
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  |||||||||||| ||| ||  | || ||||||||||| |||||||  |||| | |  |||||| ||||| |||| ||||||       
T  43478850 ttttcctcggcagttaactgcagccggatttctaaaacttcagcagttaactgccgaggggacaaaaacatcatttactcgtgtggcacaaccttatgta 43478949  T
Q  160 atgtgggagcaacaattctctt 181  Q
    |||||||| |||||||||||||    
T  43478950 atgtgggaacaacaattctctt 43478971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 52567777 - 52567720
Alignment:
Q  99 tcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||||||||| ||||  || |||||||||||||||| ||||| | |||||||||    
T  52567777 tcggcagttaactgccgagaaggcaaaatcgtattttactcgtgtgcctcagccttat 52567720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 600603 - 600683
Alignment:
Q  99 tcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    ||||||||||||||||||||| | |||| |||  |||||| ||||| | ||||||| |   |||||||| |||||||||||    
T  600603 tcggcagttaactgtcgagggcgcaaaaacgtcatttactcgtgtgccgcagccttctacaatgtgggaacaacaattctc 600683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 5138326 - 5138406
Alignment:
Q  99 tcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    |||| ||||||||||||  |||| |||| |||  |||||| ||||| |||||||||||  ||||||||| || ||||||||    
T  5138326 tcggtagttaactgtcgtaggggcaaaaacgtcatttactcgtgtggcacagccttatgtcatgtgggaacagcaattctc 5138406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 29593301 - 29593467
Alignment:
Q  12 gaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagttaact 111  Q
    ||||||||||||||||||||||| |||| ||||||||| ||||||| |||| |||| |||||  ||||||||||||||||||||||||||||||||||||    
T  29593301 gaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaacattt-cctcggcagttaactgcagccggaattcaaattcctcggcagttaact 29593399  T
Q  112 gtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    |||||||||||||||| |||||||||||||||| |||| |||||||| |||||||| |||||||||||    
T  29593400 gtcgagggggtaaaattgtattttactagtgtggcacaaccttatcaaatgtgggaacaacaattctc 29593467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 60 - 180
Target Start/End: Complemental strand, 42499462 - 42499342
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  ||||||| |||| |||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| |||||||||    
T  42499462 ttttcctcggcagttaactgcagtcggatttcaaattcctcggcaattaactgtcgaaggggtaaaatcgtattttactggtgtgacacaaccttatcac 42499363  T
Q  160 atgtgggagcaacaattctct 180  Q
    |||||||| ||||||||||||    
T  42499362 atgtgggaacaacaattctct 42499342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 618694 - 618805
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagtta 108  Q
    |||||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| |||||  |||||||||||| ||||||||||||||||||||    
T  618694 gaagaaaatagtgtgtagggggagcaggtagctgtttcatcggatgaaacattttcctcggcagttaactgcagccggatttcaaattcctcggcagtta 618793  T
Q  109 actgtcgagggg 120  Q
    |||| |||||||    
T  618794 actgccgagggg 618805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 60 - 179
Target Start/End: Complemental strand, 47776385 - 47776266
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  ||||||||| || ||  |||| |||||||||||||||||||||||| |||||||||||||||| ||||  | |||||||||||     
T  47776385 ttttcctcggcagttaactgcagccagatttttaatttctcggcagttaactgtcgagggggcaaaatcgtattttactcgtgtttctcagccttatcaa 47776286  T
Q  160 atgtgggagcaacaattctc 179  Q
    |||||||| || ||||||||    
T  47776285 atgtgggaacatcaattctc 47776266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 34142655 - 34142740
Alignment:
Q  95 ttcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctct 180  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||||| |||  |||||||  |||||||| ||||||||||||    
T  34142655 ttcctcggcagttaactgcctagggggaaaaatcgtattttactagtgtgccactaccttatcgaatgtgggaacaacaattctct 34142740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 61 - 179
Target Start/End: Original strand, 27453615 - 27453733
Alignment:
Q  61 tttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcaca 160  Q
    ||||||| |||||  |||||||||||| ||  |||||||||||||||||||| |||||||| ||| ||||||||||||  |||  |  |||||||||| |    
T  27453615 tttcctcggcagttaactgcagccggatttttaattcctcggcagttaactgccgagggggcaaagtcgtattttacttatgtttctaagccttatcaaa 27453714  T
Q  161 tgtgggagcaacaattctc 179  Q
    |||| || |||||||||||    
T  27453715 tgtgtgaacaacaattctc 27453733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 18105503 - 18105439
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    |||||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| |||||    
T  18105503 gaagaaaatagtgtgtagggggagcaggtagttgtttcatcggatgaaacattttcctcggcagt 18105439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 36186493 - 36186588
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||| |||||  |||||| ||||  ||| |||||||||||| ||||||| |||||||| |||| ||||||||||| |||||||||||||||||    
T  36186493 ttttcctcggcagttaactgcaaccggt-ttcgaattcctcggcatttaactgccgagggggcaaaagcgtattttactcgtgtgacacagccttat 36186588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 40590549 - 40590632
Alignment:
Q  98 ctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctctt 181  Q
    ||||||||||||||| |||||||| |||| ||||||||| | ||||  | ||||||||||| |||||||| |||||||||||||    
T  40590549 ctcggcagttaactgccgagggggcaaaaacgtattttattcgtgtttctcagccttatcaaatgtgggaacaacaattctctt 40590632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 43686906 - 43686987
Alignment:
Q  98 ctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    ||||||||||||||   ||| ||| |||||||||||||||||||||| |||| |||||||| |||||||| || ||||||||    
T  43686906 ctcggcagttaactactgagagggcaaaatcgtattttactagtgtggcacaaccttatcaaatgtgggaacagcaattctc 43686987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 179
Target Start/End: Complemental strand, 39460605 - 39460487
Alignment:
Q  61 tttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcaca 160  Q
    |||||||||||||  |||||||||||| ||  |||||||||||| | ||||| |||| || ||||||||||||||||| ||||  | || |||||||| |    
T  39460605 tttcctcagcagttaactgcagccggatttttaattcctcggcaatcaactgccgagaggataaaatcgtattttactcgtgtttctcaaccttatcaaa 39460506  T
Q  161 tgtgggagcaacaattctc 179  Q
    |||   | |||||||||||    
T  39460505 tgtataaacaacaattctc 39460487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 167
Target Start/End: Original strand, 34742415 - 34742522
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  ||||||| | || ||| ||||||||| || ||||||| |||||| | |||| ||||  ||||| ||||| |||||||||||||     
T  34742415 ttttcctcggcagttaactgcagtcagatttctaattcctcgacaattaactgccgagggagaaaaaacgtaaattactcgtgtgccacagccttatcaa 34742514  T
Q  160 atgtggga 167  Q
    ||||||||    
T  34742515 atgtggga 34742522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 178
Target Start/End: Complemental strand, 45361703 - 45361584
Alignment:
Q  59 attttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatca 158  Q
    ||||| ||| |||||  |||||||||||| ||  ||||||||| |||||||||| |||||| | |||| | |||||||||  |||  |  ||||||||||    
T  45361703 atttttctcggcagttaactgcagccggatttttaattcctcgtcagttaactgccgagggagcaaaaacatattttactcatgtttcttagccttatca 45361604  T
Q  159 catgtgggagcaacaattct 178  Q
     |||||||| ||||||||||    
T  45361603 aatgtgggaacaacaattct 45361584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 46860531 - 46860468
Alignment:
Q  93 aattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    ||||||||| |||||||||| |||||||| |||| ||||||||||| ||||| | |||||||||    
T  46860531 aattcctcgacagttaactgccgagggggcaaaagcgtattttacttgtgtgcctcagccttat 46860468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 181
Target Start/End: Complemental strand, 47741787 - 47741712
Alignment:
Q  106 ttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctctt 181  Q
    |||| ||||||||||| |||| ||||||||||||||||| |||| ||||||   ||||| || |||||||||||||    
T  47741787 ttaattgtcgagggggcaaaaacgtattttactagtgtggcacaaccttatgtaatgtgagaacaacaattctctt 47741712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 47741864 - 47741787
Alignment:
Q  12 gaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaatt 90  Q
    ||||||||| ||||||||||||| |||| ||||||||| ||||||| | |||||||  ||||  |||||||||||||||    
T  47741864 gaaaatagtatgtagggggagcaggtggctgtttcatctgatgaaaca-tttcctcgacagttaactgcagccggaatt 47741787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 181
Target Start/End: Original strand, 9494826 - 9494947
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  |||||||||||  ||  |||||||||||||||||||| |||||||| | |  | ||||||||| ||||| | ||||||||| |     
T  9494826 ttttcctcggcagttaactgcagccggttttttaattcctcggcagttaactgccgagggggcatatacctattttacttgtgtgcctcagccttatgaa 9494925  T
Q  160 atgtgggagcaacaattctctt 181  Q
    |||||  | |||||||| ||||    
T  9494926 atgtgtcaacaacaattttctt 9494947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 46740679 - 46740634
Alignment:
Q  134 ttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    ||||||||||| ||||||||||||| |||||||| |||||||||||    
T  46740679 ttactagtgtgtcacagccttatcaaatgtgggaacaacaattctc 46740634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 30786651 - 30786591
Alignment:
Q  13 aaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    ||||||||||| |||||||||| || | ||||||||||||||||| |||| |||| |||||    
T  30786651 aaaatagtgtgcagggggagcaggtagctgtttcatcggatgaaacatttccctcggcagt 30786591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 167
Target Start/End: Complemental strand, 34139947 - 34139843
Alignment:
Q  63 tcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatg 162  Q
    ||||| |||||  |||||||||||| ||| ||||| ||||||||||| |  ||| |||| |||| ||||  ||||| ||||| |||| |||||||| |||    
T  34139947 tcctcggcagttaactgcagccggatttctaattcttcggcagttaattaccgaaggggcaaaaacgtaaattactcgtgtgccacaaccttatcaaatg 34139848  T
Q  163 tggga 167  Q
    |||||    
T  34139847 tggga 34139843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 43033100 - 43033040
Alignment:
Q  13 aaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    |||||||||||||||||||||| || | |||||||||| |||||| |||| |||| |||||    
T  43033100 aaaatagtgtgtagggggagcaggtagctgtttcatcgtatgaaacatttccctcggcagt 43033040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 45763506 - 45763446
Alignment:
Q  13 aaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    |||||||||||||||||||||| || | |||||||||| |||||| |||| |||| |||||    
T  45763506 aaaatagtgtgtagggggagcaggtagctgtttcatcgtatgaaacatttccctcggcagt 45763446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 46863380 - 46863460
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||||||  ||  |||| ||||||||||||||| ||| |||| |||| ||||||||||| ||||| | |||||||||    
T  46863380 actgcagccggtttttcaatttctcggcagttaactgccgatggggcaaaaacgtattttacttgtgtgtctcagccttat 46863460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 48829963 - 48829895
Alignment:
Q  113 tcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctctt 181  Q
    ||||||||| |||| ||||  ||||| ||||| |||| |||||||| |||||||| |||||||||||||    
T  48829963 tcgagggggcaaaaacgtaaattactcgtgtgccacaaccttatcaaatgtgggaacaacaattctctt 48829895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 36392145 - 36392094
Alignment:
Q  93 aattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtg 144  Q
    ||||||||  ||||||||||||||||||| |||| ||||||||||| |||||    
T  36392145 aattcctcaacagttaactgtcgagggggcaaaaacgtattttacttgtgtg 36392094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 47060947 - 47060884
Alignment:
Q  93 aattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    ||||||||| |||||||||| |||||||| |||| ||||||||||| || || | |||||||||    
T  47060947 aattcctcgacagttaactgccgagggggcaaaaacgtattttacttgtatgcctcagccttat 47060884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 181
Target Start/End: Original strand, 48316319 - 48316401
Alignment:
Q  99 tcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctctt 181  Q
    |||||||||||||||| |||||| |||| | ||||||||| ||||| | ||||||||| | |||||  | |||||| ||||||    
T  48316319 tcggcagttaactgtcaagggggcaaaaacttattttacttgtgtgtctcagccttatgaaatgtgccaacaacaaatctctt 48316401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 21185639 - 21185594
Alignment:
Q  93 aattcctcggcagttaactgtcgagggggtaaaatcgtattttact 138  Q
    ||||| |||||||||||||| ||||| || ||||||||||||||||    
T  21185639 aattcttcggcagttaactgccgaggaggcaaaatcgtattttact 21185594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 36185853 - 36185805
Alignment:
Q  95 ttcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtg 144  Q
    |||||||||||| ||||| |||||||| |||||||||||||||| |||||    
T  36185853 ttcctcggcagt-aactgccgagggggcaaaatcgtattttacttgtgtg 36185805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 43624093 - 43624142
Alignment:
Q  13 aaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattt 62  Q
    |||||||||||||||||||||| || | |||||||||| |||||| ||||    
T  43624093 aaaatagtgtgtagggggagcaggtagctgtttcatcgtatgaaacattt 43624142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 42499538 - 42499490
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaa 57  Q
    |||||||||| ||||||||||||||| |||  ||||||||| |||||||    
T  42499538 gaagaaaataatgtgtagggggagcaggtgactgtttcatctgatgaaa 42499490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 41)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 31957937 - 31957769
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagtta 108  Q
    |||||||||||||||||||||||||| |||| ||||||||| ||||||| |||| |||| | |||  ||||||||||||||||||||||||||| |||||    
T  31957937 gaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaacattt-cctcggtagttaactgcagccggaattcaaattcctcggtagtta 31957839  T
Q  109 actgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattct 178  Q
     ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  31957838 gctgtcgagggggtaaaatcgtattttactagtgtggcacaaccttatcacatgtgggaacaacaattct 31957769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 41744667 - 41744834
Alignment:
Q  12 gaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagttaact 111  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||| |||| ||||||||||  || ||||||| ||||||||||||||| ||||||  |    
T  41744667 gaaaatagtgtgtagggggagcatgtggctgtttcatctgatgaaacattt-cctcagcagttaacggcagccgaaattcaaattcctcgacagttattt 41744765  T
Q  112 gtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctct 180  Q
    ||||| |||||||||||||||||||||||||||||||| | |||||| |||||||| ||||||||||||    
T  41744766 gtcgaaggggtaaaatcgtattttactagtgtgacacaactttatcaaatgtgggaacaacaattctct 41744834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 45454507 - 45454338
Alignment:
Q  12 gaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagttaact 111  Q
    ||||||||| ||||||||||||| |||| ||||||||| ||||||| || |||||| |||||  |||||| ||||| |||||||||||||||||||||||    
T  45454507 gaaaatagtatgtagggggagcaggtggttgtttcatctgatgaaacatattcctcggcagttaactgcatccggatttcaaattcctcggcagttaact 45454408  T
Q  112 gtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctctt 181  Q
    | ||||| || |||||||||||||||||||||| ||||| ||||||| |||||||| |||||||||||||    
T  45454407 gccgaggaggcaaaatcgtattttactagtgtgccacagtcttatcaaatgtgggaacaacaattctctt 45454338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 42981648 - 42981554
Alignment:
Q  181 tcttaggattttatttgatgatgaaaattcctatccatttaccgcaacttctcactccttgaacaccacctgtttcagtttcatttatttactta 275  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42981648 tcttaggtttttatttgatgatgaaaattcctatccatttaccgcaacttctcactccttgaacaccacctgtttcagtttcatttatttactta 42981554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 61 - 180
Target Start/End: Complemental strand, 1114795 - 1114676
Alignment:
Q  61 tttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcaca 160  Q
    ||||||| |||||  |||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||    
T  1114795 tttcctcggcagttaactgcagccggatttcaaatttctcggcagttaactgccgagggggtaaaatcgtattttactggtgtggcacagccttatcaca 1114696  T
Q  161 tgtgggagcaacaattctct 180  Q
    ||||||| ||||||||||||    
T  1114695 tgtgggaacaacaattctct 1114676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 82 - 179
Target Start/End: Complemental strand, 20546884 - 20546787
Alignment:
Q  82 gccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||    
T  20546884 gccggaattcaaattcctcggtagttaactgccgagggggtaaaatcgtattttactagtgtggcacaaccttatcacatgtgggaacaacaattctc 20546787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 76 - 181
Target Start/End: Original strand, 35966785 - 35966890
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaat 175  Q
    ||||||| |||| |||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||||||| || ||||| |||||||    
T  35966785 actgcagtcggatttcaaattcctcggcagttaactgccgagggggcaaaattgtattttactagtgtgacacaaccttatcaaatatgggaacaacaat 35966884  T
Q  176 tctctt 181  Q
    ||||||    
T  35966885 tctctt 35966890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 156
Target Start/End: Complemental strand, 35962360 - 35962264
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||| |||||  |||| ||||||| ||||||||||||| |||||||||| |||| ||| ||||||||||||||||| |||| |||||||||||    
T  35962360 ttttcctcggcagttaactgtagccggatttcaaattcctcgacagttaactgccgagagggcaaaatcgtattttactaatgtggcacagccttat 35962264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 43188106 - 43188005
Alignment:
Q  80 cagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    |||||||| ||  ||||||||| || |||||||||||||||| |||||||||||||||| ||||  | ||||||||||| ||||| || |||||||||||    
T  43188106 cagccggatttttaattcctcgacaattaactgtcgagggggcaaaatcgtattttactcgtgtttctcagccttatcaaatgtgagaacaacaattctc 43188007  T
Q  180 tt 181  Q
    ||    
T  43188006 tt 43188005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 39846986 - 39847069
Alignment:
Q  95 ttcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattct 178  Q
    |||||||||||||||||| |||||||| |||||| ||||||||| ||||  | ||||||||||| |||||||| ||||||||||    
T  39846986 ttcctcggcagttaactggcgagggggcaaaatcttattttactcgtgtttctcagccttatcaaatgtgggaacaacaattct 39847069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 60 - 179
Target Start/End: Complemental strand, 3641699 - 3641580
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    ||||||||||||||  |||||||||| | ||| ||||| || | | |||||||||||||||| |||| ||||  ||||| ||||| || ||||||||||     
T  3641699 ttttcctcagcagttaactgcagccgaagttctaattcatcagtaattaactgtcgagggggcaaaaacgtaaattactcgtgtgccatagccttatcaa 3641600  T
Q  160 atgtgggagcaacaattctc 179  Q
    |||||||| || ||||||||    
T  3641599 atgtgggaacatcaattctc 3641580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 179
Target Start/End: Original strand, 5304197 - 5304283
Alignment:
Q  93 aattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    ||||||| |||||||||||| ||||||||||||| ||||||||||| ||||    ||||||||||| ||||| || |||||||||||    
T  5304197 aattccttggcagttaactgccgagggggtaaaaacgtattttactcgtgtttttcagccttatcaaatgtgtgaacaacaattctc 5304283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 34234601 - 34234516
Alignment:
Q  95 ttcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctct 180  Q
    |||||||||||||||||  ||||||||||||| |||  |||||| ||||| ||||||||||||| |||||  | ||||||||||||    
T  34234601 ttcctcggcagttaactaccgagggggtaaaaacgtcatttactcgtgtggcacagccttatcaaatgtgtaaacaacaattctct 34234516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 76 - 181
Target Start/End: Original strand, 44052262 - 44052367
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaat 175  Q
    |||||||||||| | |||||||||||||| ||||||  |||||||| |||| |||  |||||| ||||| |||| ||||||   |||||||| |||||||    
T  44052262 actgcagccggattgcaaattcctcggcaattaactaccgagggggcaaaaacgtcatttactcgtgtgccacaaccttatgtaatgtgggaacaacaat 44052361  T
Q  176 tctctt 181  Q
    ||||||    
T  44052362 tctctt 44052367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 156
Target Start/End: Complemental strand, 7168141 - 7168045
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||| |||||  |||||||||||  ||  ||||| ||||||| |||| |||||||||| |||||||||||||||| ||||| | |||||||||    
T  7168141 ttttcctcggcagttaactgcagccggtttttgaattcttcggcagctaacagtcgagggggcaaaatcgtattttacttgtgtgcctcagccttat 7168045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 7340193 - 7340133
Alignment:
Q  13 aaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    |||||||||||||||||||||| || | ||||||||||||||||| ||||||||| |||||    
T  7340193 aaaatagtgtgtagggggagcaggtagctgtttcatcggatgaaacattttcctcggcagt 7340133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 18441494 - 18441582
Alignment:
Q  93 aattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctctt 181  Q
    |||| ||||||||||||||| |||||||| |||| ||||||||||| ||||| | ||||||||| | |||||  | |||||||||||||    
T  18441494 aatttctcggcagttaactgccgagggggcaaaaacgtattttacttgtgtgtctcagccttatgaaatgtgtcaacaacaattctctt 18441582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 41276876 - 41276999
Alignment:
Q  56 aatattttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagcctta 155  Q
    |||||||| ||| |||||  |||||||||| | ||| ||||||||  |||||||||| |||||||| ||||  |||  ||||| |||||  ||| |||||    
T  41276876 aatatttttctcggcagttaactgcagccgaatttctaattcctcaacagttaactgccgagggggcaaaaaagtaaattactcgtgtgcaacatcctta 41276975  T
Q  156 tcacatgtgggagcaacaattctc 179  Q
    ||| |||||||| |||||||||||    
T  41276976 tcaaatgtgggaacaacaattctc 41276999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 41743927 - 41743877
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaa 126  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  41743927 actgcagccggatttcaaattcctcggcagttaactatcgagggggcaaaa 41743877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 156
Target Start/End: Complemental strand, 39601757 - 39601661
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||| |||||  |||||||||||| ||| ||  | |||||||||||||||||||  ||||||| |||  |||||| ||||| |||||||||||    
T  39601757 ttttcctcggcagttaactgcagccggatttctaaaacttcggcagttaactgtcgagaaggtaaaaacgtcatttactcgtgtggcacagccttat 39601661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 30305516 - 30305627
Alignment:
Q  13 aaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattc-aaattcctcggcagttaact 111  Q
    |||||||||||||||||||||| || | ||||||||| ||||||| ||||||||| | |||  ||||| |||||  | | |||  |||||||||||||||    
T  30305516 aaaatagtgtgtagggggagcaggtagttgtttcatcagatgaaacattttcctcggtagttaactgccgccggtttcctaaaaacctcggcagttaact 30305615  T
Q  112 gtcgagggggta 123  Q
    | |||| |||||    
T  30305616 gccgagagggta 30305627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 20549268 - 20549318
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaa 126  Q
    |||||||||| | |||||||||||||||||||||||| |||||||| ||||    
T  20549268 actgcagccgaatttcaaattcctcggcagttaactgccgagggggcaaaa 20549318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 32378868 - 32378928
Alignment:
Q  13 aaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    |||||||||||||||||||||| || | |||||||||| |||||| |||| |||| |||||    
T  32378868 aaaatagtgtgtagggggagcaggtagctgtttcatcgtatgaaacatttccctcggcagt 32378928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 32432823 - 32432883
Alignment:
Q  13 aaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    |||||||||||||||||||||| || | |||||||||| |||||| |||| |||| |||||    
T  32432823 aaaatagtgtgtagggggagcaggtagctgtttcatcgtatgaaacatttccctcggcagt 32432883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 144
Target Start/End: Complemental strand, 39751126 - 39751043
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtg 144  Q
    |||||||| |||||  |||||||||||  ||||||||| ||||||||||| || | |||||| |||| ||||||||||| |||||    
T  39751126 ttttcctcggcagttaactgcagccggt-ttcaaattcatcggcagttaattgccaagggggcaaaaacgtattttactcgtgtg 39751043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 39752970 - 39753069
Alignment:
Q  12 gaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagttaact 111  Q
    ||||||||| ||||||||||  | ||  |||||||||| ||||||| || |||||| | | |  |||||||||||  |||||||||||||||||||||||    
T  39752970 gaaaatagtatgtagggggaataggtatatgtttcatctgatgaaacatattcctcggtatttaactgcagccggt-ttcaaattcctcggcagttaact 39753068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 18205911 - 18205868
Alignment:
Q  14 aaatagtgtgtagggggagcatgtggatgtttcatcggatgaaa 57  Q
    ||||||||||||||||||||| |||| ||||||||| |||||||    
T  18205911 aaatagtgtgtagggggagcaggtggctgtttcatctgatgaaa 18205868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 180
Target Start/End: Complemental strand, 43262474 - 43262358
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  |||||||| ||| ||||||| |||||| ||||    | ||||||||||||| |||  |||||| ||||| |||||||||||       
T  43262474 ttttcctcggcagttaactgcagctggatttcaaatacctcggaagtt----gccgagggggtaaaaacgtcatttactcgtgtggcacagccttatgta 43262379  T
Q  160 atgtgggagcaacaattctct 180  Q
    ||||| || ||||||||||||    
T  43262378 atgtgagaacaacaattctct 43262358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 26455734 - 26455784
Alignment:
Q  93 aattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgt 143  Q
    |||||||| ||||||||||| |||| |||||||| ||||||||||| ||||    
T  26455734 aattcctccgcagttaactgccgagagggtaaaaccgtattttactcgtgt 26455784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 35966696 - 35966746
Alignment:
Q  12 gaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattt 62  Q
    ||||||||| ||||||||||||| |||| ||||||||| ||||||| ||||    
T  35966696 gaaaatagtatgtagggggagcaggtggctgtttcatctgatgaaacattt 35966746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 179
Target Start/End: Original strand, 41858143 - 41858260
Alignment:
Q  62 ttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacat 161  Q
    |||||| |||||  |||||||||||  ||  ||||| ||| |||||||||| |||||||| |||| ||||||||||| ||||  | ||||| ||| | ||    
T  41858143 ttcctcggcagttaactgcagccggtttttgaattcttcgccagttaactgccgagggggcaaaaacgtattttactcgtgtttctcagccatatgaaat 41858242  T
Q  162 gtgggagcaacaattctc 179  Q
    |||  | |||||||||||    
T  41858243 gtgtcaacaacaattctc 41858260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 1114871 - 1114824
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaa 57  Q
    ||||||||||||||||| |||||||| |||| ||||||||| |||||||    
T  1114871 gaagaaaatagtgtgta-ggggagcaggtggctgtttcatctgatgaaa 1114824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 1116224 - 1116260
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactg 112  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  1116224 actgcagccggatttcaaattcctcgacagttaactg 1116260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 2146977 - 2147028
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactg 112  Q
    |||||||| ||||| ||||||||||||  |||||||||| |||||||||||||    
T  2146977 ttttcctcggcagtttactgcagccggt-ttcaaattccccggcagttaactg 2147028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 3395913 - 3395861
Alignment:
Q  92 aaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtg 144  Q
    |||||||||||||||||||||  ||||||| |||| | ||||||||| |||||    
T  3395913 aaattcctcggcagttaactgctgagggggcaaaaacatattttacttgtgtg 3395861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 5300756 - 5300680
Alignment:
Q  104 agttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctct 180  Q
    |||||||||||||||||  |||| ||||||||||| ||||  | || |||||||| |||||  | ||||||||||||    
T  5300756 agttaactgtcgaggggacaaaaacgtattttactcgtgtttctcaaccttatcaaatgtgtcaacaacaattctct 5300680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 138
Target Start/End: Original strand, 7172625 - 7172685
Alignment:
Q  78 tgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttact 138  Q
    |||||||||  || ||||| |||||||||||||||| || |||| |||| |||||||||||    
T  7172625 tgcagccggttttaaaatttctcggcagttaactgttgatggggcaaaaacgtattttact 7172685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 18205823 - 18205743
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||||||  ||  ||||| |||||||||||| | ||||| ||||||| ||||||||||| ||||  | |||||||||    
T  18205823 actgcagccggtttttgaattcttcggcagttaaccgccgaggtggtaaaaacgtattttactcgtgtttctcagccttat 18205743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 38872950 - 38873010
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggg 120  Q
    |||||||| |||||  |||||||||||  || ||||||||||| ||||||||| |||||||    
T  38872950 ttttcctcggcagttaactgcagccggtttttaaattcctcggtagttaactgacgagggg 38873010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 180
Target Start/End: Original strand, 39939251 - 39939355
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaat 175  Q
    |||||||||||| ||| ||  | ||| || |||||||||||||| | |||| |||  |||||| |||||||||| ||||||   |||||||| ||| |||    
T  39939251 actgcagccggatttctaaaacttcgacaattaactgtcgagggagcaaaaacgtcatttactcgtgtgacacatccttatgtaatgtgggaacaataat 39939350  T
Q  176 tctct 180  Q
    |||||    
T  39939351 tctct 39939355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 180
Target Start/End: Original strand, 40077270 - 40077390
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  ||||||| |||| ||  ||| ||| | ||||| || || ||||||| |||| ||||||||||| ||||  | |||||||||||     
T  40077270 ttttcctcggcagttaactgcagtcggatttttaataccttgacagtttaccgttgagggggcaaaaacgtattttactcgtgtttctcagccttatcaa 40077369  T
Q  160 atgtgggagcaacaattctct 180  Q
    |||||  | ||||||||||||    
T  40077370 atgtgtcaacaacaattctct 40077390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 11404 - 11235
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagtta 108  Q
    |||||||||||| ||||||||||||| |||| ||||||||| ||||||| |||| |||| | |||  |||||||||||||||||||||||||||||||||    
T  11404 gaagaaaatagtatgtagggggagcaggtggctgtttcatctgatgaaacattt-cctcggaagttaactgcagccggaattcaaattcctcggcagtta 11306  T
Q  109 actgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| || ||||||||    
T  11305 actgccgagggggtaaaatcgtattttactagtgtggcacagccttatcaaatgtgggaacagcaattctc 11235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 15975 - 16034
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgaggg 119  Q
    |||||||| |||||  |||||||| ||| |||||||||||||||||||||||| ||||||    
T  15975 ttttcctcggcagttaactgcagctggatttcaaattcctcggcagttaactgccgaggg 16034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 60 - 182
Target Start/End: Original strand, 27276394 - 27276516
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  |||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  27276394 ttttcctcggcagttaactgcagccggatttcaaattcctcagcagttaactgccgagggggtaaaatcgtattttactagtgtggcacagccttatcac 27276493  T
Q  160 atgtgggagcaacaattctcttc 182  Q
    |||||||| ||||||||||||||    
T  27276494 atgtgggaacaacaattctcttc 27276516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 61 - 181
Target Start/End: Complemental strand, 24749738 - 24749618
Alignment:
Q  61 tttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcaca 160  Q
    ||||||| |||||  ||| ||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  24749738 tttcctcggcagttaactacagtcggaattcaaattcctcggtagttaactgccgagggggtaaaatcgtattttactagtgtggcacagccttatcaca 24749639  T
Q  161 tgtgggagcaacaattctctt 181  Q
    ||||||| || ||||||||||    
T  24749638 tgtgggaacagcaattctctt 24749618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 38945866 - 38945752
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagtta 108  Q
    |||||||||||||||||||||||||| || | ||||||||| ||||||| ||||||||| |||||  |||||||||||| ||||||||||||||||||||    
T  38945866 gaagaaaatagtgtgtagggggagcaggtagctgtttcatcagatgaaacattttcctcggcagttaactgcagccggatttcaaattcctcggcagtta 38945767  T
Q  109 actgtcgagggggta 123  Q
    |||| ||||||||||    
T  38945766 actgccgagggggta 38945752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 60 - 175
Target Start/End: Complemental strand, 1096648 - 1096533
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  |||||||||||| |||||||||||||||||||||| | |||||||| |||||||||||||||||||||| |||| ||||||||     
T  1096648 ttttcctcggcagttaactgcagccggatttcaaattcctcggcagttaacagccgagggggcaaaatcgtattttactagtgtgccacaaccttatcaa 1096549  T
Q  160 atgtgggagcaacaat 175  Q
    |||||| | |||||||    
T  1096548 atgtggaaacaacaat 1096533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 20951016 - 20951184
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagtta 108  Q
    |||||||||||||||||||||||||| |||| ||||||||| ||||||| | | ||||| |||||  |||||||||||| ||||||||||||||||||||    
T  20951016 gaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaaca-tgtcctcggcagttaactgcagccggatttcaaattcctcggcagtta 20951114  T
Q  109 actgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    |||| |||  ||| |     ||| |||||| ||||| |||||||||||||||||||||| || ||||||||    
T  20951115 actgccga-agggcatttaggtaatttactggtgtggcacagccttatcacatgtgggaacagcaattctc 20951184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 12 - 181
Target Start/End: Original strand, 1101025 - 1101193
Alignment:
Q  12 gaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagttaact 111  Q
    ||||||||| |||||||| |||| |||  | ||||||| ||||||| ||||||||| |||||  ||| |||||||| ||||||||| |||||||||||||    
T  1101025 gaaaatagtatgtagggg-agcaggtgactttttcatctgatgaaacattttcctcggcagttaactacagccggatttcaaattcatcggcagttaact 1101123  T
Q  112 gtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctctt 181  Q
    | |||||| | |||||| |||||||||||| |  |||| |||||||| || ||||| |||||||||||||    
T  1101124 gccgagggagcaaaatcatattttactagtatagcacaaccttatcaaatatgggaacaacaattctctt 1101193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 84 - 180
Target Start/End: Complemental strand, 1149501 - 1149405
Alignment:
Q  84 cggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctct 180  Q
    |||| |||||||||||||||||||||||| |||||| | |||||||||||||||||||||| |||| |||||||| |||||||| ||||||||||||    
T  1149501 cggatttcaaattcctcggcagttaactgccgagggagcaaaatcgtattttactagtgtggcacaaccttatcaaatgtgggaacaacaattctct 1149405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 3803513 - 3803615
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagtta 108  Q
    |||||||||||||||||||||||||| |||| |||||||||  |||||| |||| |||| |||||  |||||||||||| ||||||||||||||||||||    
T  3803513 gaagaaaatagtgtgtagggggagcaggtggctgtttcatctaatgaaacattt-cctcggcagttaactgcagccggatttcaaattcctcggcagtta 3803611  T
Q  109 actg 112  Q
    ||||    
T  3803612 actg 3803615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 7263045 - 7262970
Alignment:
Q  104 agttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    ||||||||| |||||||||||||| |||||||||| ||||| |||||||||||||||||||||| |||||||||||    
T  7263045 agttaactgccgagggggtaaaatggtattttactggtgtggcacagccttatcacatgtgggaacaacaattctc 7262970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 60 - 179
Target Start/End: Original strand, 34639334 - 34639453
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    ||||||||||||||  |||||||||||| ||  |||| ||||||||||| ||| |||||||| ||||  |||  ||||||||||| |||||||||||||     
T  34639334 ttttcctcagcagttaactgcagccggatttttaatttctcggcagttacctgccgagggggcaaaaaagtaaattactagtgtggcacagccttatcaa 34639433  T
Q  160 atgtgggagcaacaattctc 179  Q
    |||||||| || ||||||||    
T  34639434 atgtgggaacatcaattctc 34639453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 25964812 - 25964738
Alignment:
Q  105 gttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    |||||||| |||||||| |||||||||||||||| ||||  | ||||||||||| |||||||| |||||||||||    
T  25964812 gttaactgccgagggggcaaaatcgtattttactcgtgtttctcagccttatcaaatgtgggaacaacaattctc 25964738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 156
Target Start/End: Complemental strand, 45475493 - 45475397
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||| |||||  |||| ||||||  ||  |||| ||||||||||||||| |||||||| |||||||||||||||| ||||| | |||||||||    
T  45475493 ttttcctcggcagttaactgtagccggtttttgaatttctcggcagttaactgccgagggggcaaaatcgtattttacttgtgtgtctcagccttat 45475397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 41181457 - 41181394
Alignment:
Q  93 aattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||||||||||||||| |||||||| |||| ||||||||||| ||||| | |||||||||    
T  41181457 aattcctcggcagttaactgccgagggggcaaaaacgtattttactcgtgtgcctcagccttat 41181394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 93 - 175
Target Start/End: Complemental strand, 23786144 - 23786062
Alignment:
Q  93 aattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaat 175  Q
    |||||||||||||||||||| |||||||  |||||| |||||||||| |||  | ||||||||||| | |||||| |||||||    
T  23786144 aattcctcggcagttaactgccgaggggacaaaatcatattttactaatgtttctcagccttatcaaacgtgggaacaacaat 23786062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 183
Target Start/End: Original strand, 35493358 - 35493484
Alignment:
Q  57 atattttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    ||||||||||| |||||  |||||||| ||  ||  |||||||||||||||||||  |||||||| |||| ||||||||||| ||||| | || ||||||    
T  35493358 atattttcctcggcagttaactgcagctggtttttgaattcctcggcagttaactaccgagggggcaaaagcgtattttactcgtgtgtctcaaccttat 35493457  T
Q  157 cacatgtgggagcaacaattctcttct 183  Q
       |||||  | |||||||||||||||    
T  35493458 gcaatgtgtcaacaacaattctcttct 35493484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 7263146 - 7263093
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattt 62  Q
    |||||||||||||||||||||||||| |||| ||||||||| ||||||| ||||    
T  7263146 gaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaacattt 7263093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 41183170 - 41183231
Alignment:
Q  12 gaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    ||||||||| ||||||||||||| |||| ||||||||| ||||||| ||||||||| |||||    
T  41183170 gaaaatagtatgtagggggagcaggtggctgtttcatctgatgaaacattttcctcggcagt 41183231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 3795390 - 3795330
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggg 120  Q
    |||||||| |||||  |||||||||||| ||||||||||||| |||||||||| |||||||    
T  3795390 ttttcctcggcagttaactgcagccggatttcaaattcctcgacagttaactgccgagggg 3795330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 18003219 - 18003279
Alignment:
Q  13 aaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    ||||||||||| |||||||||| || | ||||||||||||||||| ||||||||| |||||    
T  18003219 aaaatagtgtgcagggggagcaggtagctgtttcatcggatgaaacattttcctcggcagt 18003279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 144
Target Start/End: Original strand, 25184850 - 25184933
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtg 144  Q
    |||||||| |||||  |||||||||||  ||||||||||||| ||||||||||  ||||||| |||| ||||||||||| |||||    
T  25184850 ttttcctcggcagttaactgcagccggt-ttcaaattcctcgacagttaactgctgagggggcaaaaacgtattttactcgtgtg 25184933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 19187276 - 19187339
Alignment:
Q  93 aattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||| ||||||||||||||| |||||||| |||| ||||||||||| ||||| | |||||||||    
T  19187276 aatttctcggcagttaactgccgagggggcaaaaacgtattttacttgtgtgtctcagccttat 19187339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 29093892 - 29093971
Alignment:
Q  99 tcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattct 178  Q
    ||||||||||||||||||||||| ||||  |||  ||||| ||||| |||||||||||   |||||||| ||||||||||    
T  29093892 tcggcagttaactgtcgagggggcaaaagagtaaattactcgtgtgccacagccttatgtaatgtgggaacaacaattct 29093971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 24512187 - 24512137
Alignment:
Q  93 aattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgt 143  Q
    ||||||||  |||||||||||||||||||||||| ||||||||||| ||||    
T  24512187 aattcctcaacagttaactgtcgagggggtaaaaacgtattttacttgtgt 24512137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 435469 - 435424
Alignment:
Q  12 gaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaa 57  Q
    ||||||||||||||||||||||| |||| ||||||||| |||||||    
T  435469 gaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaa 435424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 181
Target Start/End: Complemental strand, 2917736 - 2917615
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  |||| ||||||  ||  |||| ||||||||||||||| |||||||| |||| |||||||||||  |||| | ||||||||| |     
T  2917736 ttttcctcggcagttaactgtagccggtttttcaatttctcggcagttaactgccgagggggcaaaaacgtattttacttttgtgcctcagccttatgaa 2917637  T
Q  160 atgtgggagcaacaattctctt 181  Q
    |||||  | |||||||| ||||    
T  2917636 atgtgtcaacaacaattttctt 2917615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 41008874 - 41008911
Alignment:
Q  12 gaaaatagtgtgtagggggagcatgtggatgtttcatc 49  Q
    |||||||||||||||||||||||||||| |||||||||    
T  41008874 gaaaatagtgtgtagggggagcatgtggctgtttcatc 41008911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 41560131 - 41560070
Alignment:
Q  13 aaaatagtgtgtaggggg-agcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    |||||||||||||||||| |||| || | ||||||||||||||||| ||||||||| |||||    
T  41560131 aaaatagtgtgtaggggggagcaggtagctgtttcatcggatgaaacattttcctcggcagt 41560070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 213399 - 213459
Alignment:
Q  13 aaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    |||||| ||||||||||||||| || | |||||||||| |||||| ||||||||| |||||    
T  213399 aaaataatgtgtagggggagcaggtagctgtttcatcgtatgaaacattttcctcggcagt 213459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 180
Target Start/End: Original strand, 7189971 - 7190090
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  |||||||||||| ||| ||  | |||||||||||||| ||| |||| |||| |||| |||||| ||||| |||| ||||||       
T  7189971 ttttcctcggcagttaactgcagccggatttctaaaacttcggcagttaactgccga-ggggcaaaaacgtaatttactcgtgtggcacaaccttatgta 7190069  T
Q  160 atgtgggagcaacaattctct 180  Q
    |||||||| || |||||||||    
T  7190070 atgtgggaacatcaattctct 7190090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 10624412 - 10624472
Alignment:
Q  13 aaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    |||||||||||||||||||||| || | |||||||||| |||||| |||| |||| |||||    
T  10624412 aaaatagtgtgtagggggagcaggtagctgtttcatcgtatgaaacatttccctcggcagt 10624472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 156
Target Start/End: Complemental strand, 19186800 - 19186704
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    ||||||| ||||||  ||||||||||   ||  |||| |||||||||| |||| ||| ||||||||| ||||||||||| ||||| | |||||||||    
T  19186800 ttttccttagcagttaactgcagccgctttttgaattgctcggcagtttactgccgatggggtaaaaacgtattttacttgtgtgtctcagccttat 19186704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 156
Target Start/End: Complemental strand, 35490733 - 35490637
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    ||||| ||||||||  |||||||||||  ||  ||||| |||||||||||| ||||||| || ||||  |||||||||| ||||| | |||||||||    
T  35490733 ttttcttcagcagttaactgcagccggtttttgaattcttcggcagttaaccgtcgaggaggcaaaaatgtattttactcgtgtgtctcagccttat 35490637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 39794092 - 39794044
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaa 57  Q
    ||||||||||| |||||||||||||| |||| ||||||||| |||||||    
T  39794092 gaagaaaatagagtgtagggggagcaggtggctgtttcatctgatgaaa 39794044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 27276321 - 27276360
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcat 48  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  27276321 gaagaaaatagtgtgtagggggagcaggtggctgtttcat 27276360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 43493310 - 43493373
Alignment:
Q  93 aattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||  ||||||||||| |||||||| |||| ||||||||||| ||||| | |||||||||    
T  43493310 aattccttagcagttaactgccgagggggcaaaaacgtattttacttgtgtgtctcagccttat 43493373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 45428601 - 45428550
Alignment:
Q  128 cgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    ||||||||||| ||||||||||||| ||| | |||||||| |||||||||||    
T  45428601 cgtattttactcgtgtgacacagccatattatatgtgggaacaacaattctc 45428550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 5334688 - 5334634
Alignment:
Q  13 aaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctc 67  Q
    |||||||||||||||||||||| || | ||| |||||| |||||| |||||||||    
T  5334688 aaaatagtgtgtagggggagcaggtagctgtatcatcgtatgaaacattttcctc 5334634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 144
Target Start/End: Complemental strand, 435395 - 435312
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtg 144  Q
    |||||||| | ||| ||||||||||| | ||||||||| |||||||||||||| | |||||| |||| ||||  ||||| |||||    
T  435395 ttttcctcggtagtttactgcagccg-atttcaaattcatcggcagttaactgccaagggggcaaaaacgtaaattactcgtgtg 435312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 144
Target Start/End: Original strand, 23409521 - 23409605
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtg 144  Q
    |||||||| |||||  ||||||||| |  ||  |||||||||||| ||||||| |||| ||| |||  |||||||||||||||||    
T  23409521 ttttcctcggcagttaactgcagccagtttttgaattcctcggcaattaactgccgagagggcaaacgcgtattttactagtgtg 23409605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 43950190 - 43950238
Alignment:
Q  12 gaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatat 60  Q
    ||||||||||||||||||||| | |||  ||||||||| ||||||||||    
T  43950190 gaaaatagtgtgtagggggagtaggtgtctgtttcatctgatgaaatat 43950238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 45137469 - 45137569
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaat 175  Q
    |||||||||| | ||  |||||||||||| ||||||| | ||| || |||||||||||||||| ||||    ||||||||||| |||| ||  |||||||    
T  45137469 actgcagccgaatttttaattcctcggcaattaactgccaaggaggcaaaatcgtattttactcgtgtttatcagccttatcaaatgtaggtacaacaat 45137568  T
Q  176 t 176  Q
    |    
T  45137569 t 45137569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 60 - 179
Target Start/End: Complemental strand, 9890047 - 9889928
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||    
T  9890047 ttttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgagggggtaaaatcgtattttactggtgtggcacagccttatcac 9889948  T
Q  160 atgtgggagcaacaattctc 179  Q
    |||||||| |||||||||||    
T  9889947 atgtgggaacaacaattctc 9889928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 61 - 180
Target Start/End: Complemental strand, 41023438 - 41023319
Alignment:
Q  61 tttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcaca 160  Q
    |||||||||||||  |||||||||||| |||||||| ||||||||||||||| | ||| ||||||||||||||||| | ||||| || ||||||||||||    
T  41023438 tttcctcagcagttaactgcagccggatttcaaatttctcggcagttaactgccaaggaggtaaaatcgtattttattggtgtggcagagccttatcaca 41023339  T
Q  161 tgtgggagcaacaattctct 180  Q
    ||||||| ||||||||||||    
T  41023338 tgtgggaacaacaattctct 41023319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 61 - 179
Target Start/End: Complemental strand, 50274812 - 50274694
Alignment:
Q  61 tttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcaca 160  Q
    ||||||| |||||  |||||||||||| ||| |||||||||||||||||||| |||||||| |||| ||||  ||||| ||||| ||||||| ||||| |    
T  50274812 tttcctcggcagttaactgcagccggatttctaattcctcggcagttaactgccgagggggcaaaaacgtaaattactcgtgtgccacagccctatcaaa 50274713  T
Q  161 tgtgggagcaacaattctc 179  Q
    ||||||| |||||||||||    
T  50274712 tgtgggaacaacaattctc 50274694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 93 - 180
Target Start/End: Complemental strand, 56138267 - 56138180
Alignment:
Q  93 aattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctct 180  Q
    |||| ||||||||||||||||||| |||| |||||||||||||||||||||| |||| |||||||| |||||||| || |||||||||    
T  56138267 aatttctcggcagttaactgtcgaaggggcaaaatcgtattttactagtgtggcacaaccttatcaaatgtgggaacagcaattctct 56138180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 60 - 181
Target Start/End: Original strand, 50278818 - 50278939
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  |||||||||||| ||| ||||| ||| ||||||||||||||||||  |||| ||||  ||||| ||||| |||| ||||||||     
T  50278818 ttttcctcggcagttaactgcagccggatttctaattcatcgacagttaactgtcgaggggacaaaaacgtaaattactcgtgtgccacaaccttatcaa 50278917  T
Q  160 atgtgggagcaacaattctctt 181  Q
    |||||||| |||||||||||||    
T  50278918 atgtgggaacaacaattctctt 50278939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 4768779 - 4768610
Alignment:
Q  12 gaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagttaact 111  Q
    ||||||||| ||||||||||||| |||  ||||||||  ||||||| || || ||| |||||  ||||||||| || ||  |||||||||||||||||||    
T  4768779 gaaaatagtatgtagggggagcaggtgactgtttcatatgatgaaacatatttctcggcagttaactgcagccagattttgaattcctcggcagttaact 4768680  T
Q  112 gtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctctt 181  Q
    | |||||||| |||||  ||||||||| |||||   ||||||||| | |||||  | |||||||| ||||    
T  4768679 gccgagggggcaaaattatattttacttgtgtgcatcagccttatgaaatgtgtcaacaacaattttctt 4768610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 167
Target Start/End: Complemental strand, 37394303 - 37394194
Alignment:
Q  58 tattttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatc 157  Q
    ||||| |||| |||||  |||||| ||||| ||||||||||||| |||||||||| ||| | || |||||||||||||||||||||| |||| || ||||    
T  37394303 tatttacctcggcagttaactgcatccggatttcaaattcctcgacagttaactgccgaagaggcaaaatcgtattttactagtgtggcacaaccatatc 37394204  T
Q  158 acatgtggga 167  Q
    | ||||||||    
T  37394203 aaatgtggga 37394194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 60 - 180
Target Start/End: Complemental strand, 8109444 - 8109324
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  |||| |||||||  |  ||||||||| |||||||||  | ||||||||||||||||||||||| ||||  | |||||||||||     
T  8109444 ttttcctcggcagttaactgtagccggatatttaattcctcgacagttaactaccaagggggtaaaatcgtattttactcgtgtttctcagccttatcaa 8109345  T
Q  160 atgtgggagcaacaattctct 180  Q
    |||||||| ||||||||||||    
T  8109344 atgtgggaacaacaattctct 8109324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 19073713 - 19073778
Alignment:
Q  114 cgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    ||||| ||||||||||||||||||| ||||| |||| ||||||||||||||||| |||||||||||    
T  19073713 cgaggaggtaaaatcgtattttactggtgtggcacaaccttatcacatgtgggaacaacaattctc 19073778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 164
Target Start/End: Original strand, 37395227 - 37395316
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaa-tcgtattttactagtgtgacacagccttatcacatgtg 164  Q
    |||||||||||| ||||||||||||| ||||||| ||  ||||||| |||| |||||||||||||||||| |||| |||||||| |||||    
T  37395227 actgcagccggatttcaaattcctcgacagttaagtgctgagggggcaaaaatcgtattttactagtgtggcacaaccttatcaaatgtg 37395316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 164
Target Start/End: Original strand, 16984181 - 16984285
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  |||||||||||| ||| ||  | |||||||||||||| ||||||||||||| |||  |||||| ||||| |||||||||||||     
T  16984181 ttttcctcggcagttaactgcagccggatttctaaaacttcggcagttaactgccgagggggtaaaaacgtcatttactcgtgtggcacagccttatcaa 16984280  T
Q  160 atgtg 164  Q
    |||||    
T  16984281 atgtg 16984285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 3403910 - 3403848
Alignment:
Q  50 ggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactg 112  Q
    |||||||| ||||||||| |||||  |||||||||||| ||||||||||||||||||||||||    
T  3403910 ggatgaaacattttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactg 3403848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 59 - 180
Target Start/End: Original strand, 1044538 - 1044659
Alignment:
Q  59 attttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatca 158  Q
    ||||||||| |||||  ||||||||| || ||||||||| ||| |||||||||| ||| || | |||||| ||||||||||||||| || | | ||||||    
T  1044538 attttcctcggcagttaactgcagccagatttcaaattcatcgacagttaactgccgaaggagcaaaatcatattttactagtgtggcataactttatca 1044637  T
Q  159 catgtgggagcaacaattctct 180  Q
     |||| ||| || |||||||||    
T  1044638 aatgttggaacatcaattctct 1044659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 16983536 - 16983455
Alignment:
Q  99 tcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctct 180  Q
    |||||||||||||| ||||||||||||| |||  |||||| ||||| ||||||||||||| |||||  | ||||||||||||    
T  16983536 tcggcagttaactgccgagggggtaaaaacgtcatttactcgtgtggcacagccttatcaaatgtgtaaacaacaattctct 16983455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 179
Target Start/End: Complemental strand, 1041989 - 1041869
Alignment:
Q  59 attttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatca 158  Q
    ||||| ||| |||||  ||||||| |||| ||| |||||||||||||||||||| |||  ||| ||||  |||  ||||| ||||  |||||||||||||    
T  1041989 atttttctcggcagttaactgcagtcggatttctaattcctcggcagttaactgccgatcgggcaaaaaagtaaattactcgtgtaccacagccttatca 1041890  T
Q  159 catgtgggagcaacaattctc 179  Q
     |||||||| |||||||||||    
T  1041889 aatgtgggaacaacaattctc 1041869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 56140689 - 56140757
Alignment:
Q  97 cctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgg 165  Q
    |||||| ||||||||| |||||||| ||||||| |||||||||||||| |||| |||||||| ||||||    
T  56140689 cctcggtagttaactgccgagggggcaaaatcgaattttactagtgtggcacaaccttatcaaatgtgg 56140757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 15995775 - 15995712
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggta 123  Q
    |||||||| |||||  |||||||||||| |||||||||||||||| ||||||| ||||||||||    
T  15995775 ttttcctcggcagttaactgcagccggatttcaaattcctcggcatttaactgccgagggggta 15995712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 19069240 - 19069177
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggta 123  Q
    |||||||| |||||  |||||||||||| |||||||||||||||| ||||||| ||||||||||    
T  19069240 ttttcctcggcagttaactgcagccggatttcaaattcctcggcatttaactgccgagggggta 19069177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 49566422 - 49566533
Alignment:
Q  13 aaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattc-aaattcctcggcagttaact 111  Q
    |||||||||||||||||||||| || | ||||||||||||||||| ||||||||| | |||  ||||| |||||  | | |||  |||||||||||||||    
T  49566422 aaaatagtgtgtagggggagcaggtagctgtttcatcggatgaaacattttcctcggtagttaactgccgccggtttcctaaaaacctcggcagttaact 49566521  T
Q  112 gtcgagggggta 123  Q
    | |||| |||||    
T  49566522 gccgagagggta 49566533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 15999743 - 15999796
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattt 62  Q
    |||||||||||||||||||||||||| |||| ||||||||| ||||||| ||||    
T  15999743 gaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaacattt 15999796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 156
Target Start/End: Complemental strand, 39588142 - 39588049
Alignment:
Q  63 tcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    ||||| |||||  ||||||| || | ||| |||||||||||||||||||| |||||||| |||| |||  |||||| |||||||||| ||||||    
T  39588142 tcctcggcagttaactgcagtcgaatttctaattcctcggcagttaactgccgagggggcaaaaacgtcatttactcgtgtgacacatccttat 39588049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 9491295 - 9491392
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacaca---gccttatcacatgtgggagcaac 172  Q
    |||||||||||| |||||||||||| ||||||         ||||||||||||||||||||||||| |||||||    |||||||| |||||||| ||||    
T  9491295 actgcagccggatttcaaattcctctgcagtt---------gggggtaaaatcgtattttactagtatgacacaacctccttatcaaatgtgggaacaac 9491385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 9890123 - 9890075
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaa 57  Q
    |||||||||||||||||||||||||| |||| ||||||||| |||||||    
T  9890123 gaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaa 9890075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 19073599 - 19073647
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaa 57  Q
    |||||||||||||||||||||||||| |||| ||||||||| |||||||    
T  19073599 gaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaa 19073647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 37959772 - 37959836
Alignment:
Q  92 aaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||||  |||||||||| ||||||||||||| ||||||||||| ||||| | |||||||||    
T  37959772 aaattcctcaacagttaactgccgagggggtaaaaacgtattttactcgtgtgcctcagccttat 37959836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 15999819 - 15999882
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggta 123  Q
    |||||||| |||||  | |||||||||| |||||||| ||||||||||||||| ||||||||||    
T  15999819 ttttcctcggcagttaattgcagccggatttcaaatttctcggcagttaactgccgagggggta 15999882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 49572953 - 49573016
Alignment:
Q  93 aattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    ||||||||| |||||||||||||| |||| |||| ||||||||||| ||||| | |||||||||    
T  49572953 aattcctcgacagttaactgtcgatggggcaaaaacgtattttacttgtgtgcctcagccttat 49573016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 156
Target Start/End: Original strand, 21472502 - 21472600
Alignment:
Q  58 tattttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||||| |||||  ||||||||||   ||  |||||||||||||||||||| ||||| || |||| ||||||||||| ||||  | |||||||||    
T  21472502 tattttcctcggcagttaactgcagccgatttttgaattcctcggcagttaactgccgaggcggcaaaaacgtattttactcgtgtttctcagccttat 21472600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 1087963 - 1087910
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattt 62  Q
    |||||||||||||||||||||||||| || | ||||||||| ||||||| ||||    
T  1087963 gaagaaaatagtgtgtagggggagcaggtagctgtttcatctgatgaaacattt 1087910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 29700322 - 29700418
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||| |||||  |||||||||||   |  |||||||| ||||||||||||||||| |  |||| ||||||||||| ||||| | |||||||||    
T  29700322 ttttcctcggcagttaactgcagccggttattgaattcctcagcagttaactgtcgaggagacaaaagcgtattttacttgtgtgcctcagccttat 29700418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 18581280 - 18581323
Alignment:
Q  14 aaatagtgtgtagggggagcatgtggatgtttcatcggatgaaa 57  Q
    ||||||||||||||||||||| |||| ||||||||| |||||||    
T  18581280 aaatagtgtgtagggggagcaggtggttgtttcatctgatgaaa 18581323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 179
Target Start/End: Complemental strand, 56304913 - 56304811
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaat 175  Q
    ||||||||| || ||  ||||||||| |||||||||| ||| |||  ||||| |||||||||| ||||  | || |||||||| |||||||| |||||||    
T  56304913 actgcagccagatttttaattcctcgacagttaactgccgatgggcaaaaat-gtattttactcgtgtttctcaaccttatcaaatgtgggaacaacaat 56304815  T
Q  176 tctc 179  Q
    ||||    
T  56304814 tctc 56304811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 37015949 - 37015864
Alignment:
Q  95 ttcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctct 180  Q
    |||||||||||||||||| |||||||| ||||  ||  ||||||  |||| |||| ||||||   |||||||| ||||||||||||    
T  37015949 ttcctcggcagttaactgccgagggggcaaaaatgtcatttactcatgtggcacatccttatgtaatgtgggaacaacaattctct 37015864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 44049225 - 44049180
Alignment:
Q  12 gaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaa 57  Q
    ||||||||| ||||||||||||| |||| ||||||||| |||||||    
T  44049225 gaaaatagtatgtagggggagcaggtggttgtttcatctgatgaaa 44049180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 4975891 - 4975831
Alignment:
Q  13 aaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    |||||||| ||||||||||||| |||  ||||||||| ||||||| || |||||| |||||    
T  4975891 aaaatagtatgtagggggagcaggtgactgtttcatctgatgaaacatattcctcggcagt 4975831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 13173363 - 13173315
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaa 57  Q
    |||||||||||  ||||||||||||| |||| ||||||||| |||||||    
T  13173363 gaagaaaatagaatgtagggggagcaggtggctgtttcatcagatgaaa 13173315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 157
Target Start/End: Complemental strand, 51683276 - 51683216
Alignment:
Q  97 cctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatc 157  Q
    ||||||||||||||||  ||||||| |||| ||||||||||| ||||  | ||||||||||    
T  51683276 cctcggcagttaactgctgagggggcaaaaacgtattttactcgtgtttctcagccttatc 51683216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 61 - 179
Target Start/End: Original strand, 17372 - 17490
Alignment:
Q  61 tttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcaca 160  Q
    ||||||| |||||  |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||    
T  17372 tttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgccgagggggtaaaatcgtattttactagtgtggcacaaccttatcaca 17471  T
Q  161 tgtgggagcaacaattctc 179  Q
    ||||||| || ||||||||    
T  17472 tgtgggaacagcaattctc 17490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 4436 - 4539
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaat 175  Q
    |||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||| ||||||||||||||||| |||||||    
T  4436 actgcagccggagttcaaattcctcggcagttaactgccgagggagtaaaatcgtattttactagtgtggcacaaccttatcacatgtgggaacaacaat 4535  T
Q  176 tctc 179  Q
    ||||    
T  4536 tctc 4539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 4345 - 4397
Alignment:
Q  10 aagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattt 62  Q
    ||||||||||| ||||||||||||| |||| ||||||||| ||||||| ||||    
T  4345 aagaaaatagtttgtagggggagcaggtggttgtttcatctgatgaaacattt 4397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 60 - 180
Target Start/End: Complemental strand, 884 - 764
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    |||||||| |||||  ||| |||||| | ||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||    
T  884 ttttcctcggcagttaactacagccgaatttcaaattcctaggcagttaactgccgagggggtaaaatcgtattttactggtgtggcacagccttatcac 785  T
Q  160 atgtgggagcaacaattctct 180  Q
    |||||||| || |||||||||    
T  784 atgtgggaacagcaattctct 764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 986 - 933
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattt 62  Q
    |||||||||||||||||||||||||| |||| ||||||||| ||||||| ||||    
T  986 gaagaaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaacattt 933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 18347145 - 18347031
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagtta 108  Q
    |||||||||||||||||||||||||| || | |||||||| |||||||| ||||||||| |||||  |||||||||||| |||| |||||||||||||||    
T  18347145 gaagaaaatagtgtgtagggggagcaggtagctgtttcattggatgaaacattttcctcggcagttaactgcagccggatttcagattcctcggcagtta 18347046  T
Q  109 actgtcgagggggta 123  Q
    |||| ||||||||||    
T  18347045 actgccgagggggta 18347031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 76 - 179
Target Start/End: Complemental strand, 31768790 - 31768687
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaat 175  Q
    |||||||||||| ||  |||||||||||||||||||| |||||||| ||||  |||  ||||| |||| |||||||||||||| |||||||| |||||||    
T  31768790 actgcagccggatttttaattcctcggcagttaactgccgagggggcaaaaaagtaaattactcgtgttacacagccttatcaaatgtgggaacaacaat 31768691  T
Q  176 tctc 179  Q
    ||||    
T  31768690 tctc 31768687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 179
Target Start/End: Complemental strand, 29065777 - 29065674
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaat 175  Q
    |||||||||||| ||| |||||||||||||||||||| |||||||| ||||  |||  ||||| ||||| |||||||||||   |||||||| |||||||    
T  29065777 actgcagccggatttctaattcctcggcagttaactgccgagggggcaaaaaagtaaattactcgtgtgccacagccttatttaatgtgggaacaacaat 29065678  T
Q  176 tctc 179  Q
    ||||    
T  29065677 tctc 29065674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 179
Target Start/End: Complemental strand, 29074790 - 29074687
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaat 175  Q
    |||||||||||| ||| |||||||||||||||||||| |||||||| ||||  |||  ||||| ||||| |||||||||||   |||||||| |||||||    
T  29074790 actgcagccggatttctaattcctcggcagttaactgccgagggggcaaaaaagtaaattactcgtgtgccacagccttatttaatgtgggaacaacaat 29074691  T
Q  176 tctc 179  Q
    ||||    
T  29074690 tctc 29074687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 179
Target Start/End: Complemental strand, 29079554 - 29079451
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaat 175  Q
    |||||||||||| ||| |||||||||||||||||||| |||||||| ||||  |||  ||||| ||||| |||||||||||   |||||||| |||||||    
T  29079554 actgcagccggatttctaattcctcggcagttaactgccgagggggcaaaaaagtaaattactcgtgtgccacagccttatttaatgtgggaacaacaat 29079455  T
Q  176 tctc 179  Q
    ||||    
T  29079454 tctc 29079451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 179
Target Start/End: Complemental strand, 29107363 - 29107260
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaat 175  Q
    |||||||||||| ||| |||||||||||||||||||| |||||||| ||||  |||  ||||| ||||| |||||||||||   |||||||| |||||||    
T  29107363 actgcagccggatttctaattcctcggcagttaactgccgagggggcaaaaaagtaaattactcgtgtgccacagccttatttaatgtgggaacaacaat 29107264  T
Q  176 tctc 179  Q
    ||||    
T  29107263 tctc 29107260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 13388651 - 13388715
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    |||||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| |||||    
T  13388651 gaagaaaatagtgtgtagggggagcaggtagttgtttcatcggatgaaacattttcctcggcagt 13388715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 181
Target Start/End: Original strand, 28362751 - 28362875
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaa---ctgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||| |||||  |||||||||||| |||||||||||||||||||||   ||| ||| ||||||||| |||  |||||| ||||| |||||||||||    
T  28362751 ttttcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgctgccgacggggtaaaaacgtcatttactcgtgtggcacagccttat 28362850  T
Q  157 cacatgtgggagcaacaattctctt 181  Q
       ||||||||  | ||||||||||    
T  28362851 gtaatgtgggaatagcaattctctt 28362875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 18610226 - 18610321
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||| |||||  | |||||||||  |||||||||||||||| ||||||  ||| |||| |||| ||||||||||| |||||||||||||||||    
T  18610226 ttttcctcggcagttaaatgcagccggt-ttcaaattcctcggcatttaactaccgaaggggcaaaaacgtattttactcgtgtgacacagccttat 18610321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 179
Target Start/End: Complemental strand, 29061333 - 29061230
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaat 175  Q
    |||||||||| | ||| |||||||||||||||||||| |||||||| ||||  |||  ||||| ||||| |||||||||||   |||||||| || ||||    
T  29061333 actgcagccgaatttctaattcctcggcagttaactgccgagggggcaaaaaagtaaattactcgtgtgccacagccttatgtaatgtgggaacaccaat 29061234  T
Q  176 tctc 179  Q
    ||||    
T  29061233 tctc 29061230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 23985955 - 23986097
Alignment:
Q  14 aaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgt 113  Q
    |||| |||||||||||||||| |||  ||||||||| ||||||| || || |   |||||  |||||| ||||  ||  |||| |||||||||||||||     
T  23985955 aaatggtgtgtagggggagcaggtgactgtttcatctgatgaaacatatttcatggcagttaactgcaaccggtttttgaatttctcggcagttaactgc 23986054  T
Q  114 cgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    | |||||| |||| ||||||||||| ||||| | |||||||||    
T  23986055 caagggggcaaaaacgtattttacttgtgtgtctcagccttat 23986097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 28250015 - 28249951
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    |||||||||||||||||||||||||| || | |||||||||  |||||| ||||||||| |||||    
T  28250015 gaagaaaatagtgtgtagggggagcaggtagctgtttcatcaaatgaaacattttcctcggcagt 28249951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 153
Target Start/End: Complemental strand, 18606097 - 18606005
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagcct 153  Q
    |||||||| |||||  |||||||||||  | ||||||||| |||||||||||  |||||||| |||| ||||||||||| ||||| | ||||||    
T  18606097 ttttcctcggcagttaactgcagccggtgt-caaattcctaggcagttaactaccgagggggcaaaaacgtattttactcgtgtgcctcagcct 18606005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 1612694 - 1612754
Alignment:
Q  13 aaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    |||||||||||||||||||||| || | |||||||||| |||||| |||| |||| |||||    
T  1612694 aaaatagtgtgtagggggagcaggtagctgtttcatcgtatgaaacatttccctcggcagt 1612754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 13401543 - 13401443
Alignment:
Q  56 aatattttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagcctta 155  Q
    ||||||||||| ||||||  ||||||||||   ||  |||||||||||||||||||| |||||||| |||| | ||||| ||| |||| || || |||||    
T  13401543 aatattttccttagcagttaactgcagccgattttttaattcctcggcagttaactgccgagggggcaaaagcatatttaactcgtgttactcaacctta 13401444  T
Q  156 t 156  Q
    |    
T  13401443 t 13401443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 31146410 - 31146374
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactg 112  Q
    |||||||||||| ||||||||||||||||||||||||    
T  31146410 actgcagccggatttcaaattcctcggcagttaactg 31146374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 12784010 - 12784073
Alignment:
Q  93 aattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    ||||| |||||||||||||| ||| |||| |||| ||||||||||| ||||| | |||||||||    
T  12784010 aattcatcggcagttaactgccgatggggcaaaagcgtattttacttgtgtgcctcagccttat 12784073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 179
Target Start/End: Original strand, 29076343 - 29076462
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    ||||||||||||||  |||||||||||| ||| ||  | ||| |||||||||| ||| |||| |||| |||   ||||| ||||| |||||||||||       
T  29076343 ttttcctcagcagttaactgcagccggatttctaaaacttcgacagttaactgccgaaggggcaaaaacgtcaattacttgtgtgccacagccttatgca 29076442  T
Q  160 atgtgggagcaacaattctc 179  Q
    | |||||| |||||||||||    
T  29076443 acgtgggaacaacaattctc 29076462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 179
Target Start/End: Original strand, 29109876 - 29109995
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    ||||||||||||||  |||||||||||| ||| ||  | ||| |||||||||| ||| |||| |||| |||   ||||| ||||| |||||||||||       
T  29109876 ttttcctcagcagttaactgcagccggatttctaaaacttcgacagttaactgccgaaggggcaaaaacgtcaattacttgtgtgccacagccttatgca 29109975  T
Q  160 atgtgggagcaacaattctc 179  Q
    | |||||| |||||||||||    
T  29109976 acgtgggaacaacaattctc 29109995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 179
Target Start/End: Original strand, 29111316 - 29111435
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcac 159  Q
    ||||||||||||||  |||||||||||| ||| ||  | ||| |||||||||| ||| |||| |||| |||   ||||| ||||| |||||||||||       
T  29111316 ttttcctcagcagttaactgcagccggatttctaaaacttcgacagttaactgccgaaggggcaaaaacgtcaattacttgtgtgccacagccttatgca 29111415  T
Q  160 atgtgggagcaacaattctc 179  Q
    | |||||| |||||||||||    
T  29111416 acgtgggaacaacaattctc 29111435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 31146498 - 31146439
Alignment:
Q  14 aaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    |||||||||||||||||||||  ||| ||||||||| ||||||| || |||||| |||||    
T  31146498 aaatagtgtgtagggggagcagatggctgtttcatcagatgaaacatattcctcggcagt 31146439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 18606171 - 18606110
Alignment:
Q  12 gaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    ||||||||||||||||||||||| |||  ||||||||| ||| |||||| || ||| |||||    
T  18606171 gaaaatagtgtgtagggggagcaggtgactgtttcatctgataaaatatatttctcggcagt 18606110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 26702730 - 26702775
Alignment:
Q  111 tgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||| ||| ||||| ||||||||||| |||||||||||||||||    
T  26702730 tgtcgatgggataaaagcgtattttactcgtgtgacacagccttat 26702775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 144
Target Start/End: Complemental strand, 2051081 - 2050998
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtg 144  Q
    |||||||| |||||  |||||| ||||  ||||||||| |||||||||||||| ||| || | |||| ||||||||||| |||||    
T  2051081 ttttcctcggcagttaactgcaaccggt-ttcaaattcatcggcagttaactgccgaaggagcaaaaacgtattttactcgtgtg 2050998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 23958927 - 23958839
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtg 164  Q
    |||||||||||  ||  |||| ||||||||||||||| |||||||  |||| ||||||||| | | ||| | ||||||||||| |||||    
T  23958927 actgcagccggttttggaatttctcggcagttaactgccgaggggacaaaaacgtattttagttgggtgtctcagccttatcatatgtg 23958839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 11880 - 11770
Alignment:
Q  13 aaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactg 112  Q
    |||||||||||||||||||||| || | ||||||||||||||||| ||||||||| |||||  |||||||||||| |||||||||||||| |||||||||    
T  11880 aaaatagtgtgtagggggagcaggtagctgtttcatcggatgaaacattttcctcggcagttaactgcagccggatttcaaattcctcggtagttaactg 11781  T
Q  113 tcgagggggta 123  Q
     |||| |||||    
T  11780 ccgagagggta 11770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 3580 - 3665
Alignment:
Q  95 ttcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctct 180  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||||| |||  |||||||  |||||||| ||||||||||||    
T  3580 ttcctcggcagttaactgcctagggggaaaaatcgtattttactagtgtgccactaccttatcgaatgtgggaacaacaattctct 3665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 167
Target Start/End: Complemental strand, 872 - 768
Alignment:
Q  63 tcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatg 162  Q
    ||||| |||||  |||||||||||| ||| ||||| ||||||||||| |  ||| |||| |||| ||||  ||||| ||||| |||| |||||||| |||    
T  872 tcctcggcagttaactgcagccggatttctaattcttcggcagttaattaccgaaggggcaaaaacgtaaattactcgtgtgccacaaccttatcaaatg 773  T
Q  163 tggga 167  Q
    |||||    
T  772 tggga 768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 76 - 180
Target Start/End: Complemental strand, 18068 - 17964
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaat 175  Q
    |||||||||||  ||| ||||||||||||||||||||||||||||| |||| ||||  ||||| ||||| |||| | |||||| |||||||| || ||||    
T  18068 actgcagccgggtttctaattcctcggcagttaactgtcgagggggcaaaaacgtaaattactcgtgtgccacaactttatcaaatgtgggaacatcaat 17969  T
Q  176 tctct 180  Q
    |||||    
T  17968 tctct 17964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 76 - 180
Target Start/End: Original strand, 54776 - 54880
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaat 175  Q
    |||||||||||  ||| ||||||||||||||||||||||||||||| |||| ||||  ||||| ||||| |||| | |||||| |||||||| || ||||    
T  54776 actgcagccgggtttctaattcctcggcagttaactgtcgagggggcaaaaacgtaaattactcgtgtgccacaactttatcaaatgtgggaacatcaat 54875  T
Q  176 tctct 180  Q
    |||||    
T  54876 tctct 54880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 156
Target Start/End: Complemental strand, 22457 - 22360
Alignment:
Q  59 attttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||||||||||  |||||||||| | |||||||||||||||||||||||| |||||||| ||||  |||   |||| |||||||||| ||||||    
T  22457 attttcctcagcagttaactgcagccgaatttcaaattcctcggcagttaactgccgagggggcaaaagagtaaaatactcgtgtgacacaaccttat 22360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 182
Target Start/End: Complemental strand, 232600 - 232479
Alignment:
Q  61 tttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcaca 160  Q
    ||||||| |||||  ||||||| |||| ||  ||||||||| |||||||||| ||||||| |||||||||||||||||||| |  | || |||||||  |    
T  232600 tttcctcggcagttaactgcagtcggatttttaattcctcgacagttaactgccgaggggataaaatcgtattttactagtctttctcaaccttatccaa 232501  T
Q  161 tgtgggagcaacaattctcttc 182  Q
    |||||||  | |||||||||||    
T  232500 tgtgggaatagcaattctcttc 232479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 232897 - 232961
Alignment:
Q  115 gagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtgggagcaacaattctc 179  Q
    |||||||||||||||||||||||||||||  | |||| |||||| |||||||| |||||||||||    
T  232897 gagggggtaaaatcgtattttactagtgtttctcagctttatcaaatgtgggaacaacaattctc 232961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 15804 - 15664
Alignment:
Q  12 gaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagtatactgcagccggaattcaaattcctcggcagttaact 111  Q
    ||||||||| ||||||||||||| |||  ||||||||| ||||||| || |||||| |||||  |||||| ||||  ||  ||||||||| |||||||||    
T  15804 gaaaatagtatgtagggggagcaggtgactgtttcatctgatgaaacatattcctcggcagttaactgcaaccggtttttgaattcctcgacagttaact 15705  T
Q  112 gtcgagggggtaaaatcgtattttactagtgtgacacagcc 152  Q
    ||| | | || |||| ||||  ||||| ||||| |||||||    
T  15704 gtcaatgaggcaaaaacgtaaattactcgtgtgccacagcc 15664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0794 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0794
Description:

Target: scaffold0794; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 5398 - 5337
Alignment:
Q  12 gaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    ||||||||| ||||||||||||| |||| ||||||||| ||||||| ||||||||| |||||    
T  5398 gaaaatagtatgtagggggagcaggtggctgtttcatctgatgaaacattttcctcggcagt 5337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 50177 - 50113
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattttcctcagcagt 73  Q
    |||||||||||||||||||||||||| || | |||||||||  |||||| ||||||||| |||||    
T  50177 gaagaaaatagtgtgtagggggagcaggtagctgtttcatcaaatgaaacattttcctcggcagt 50113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0744 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 367 - 420
Alignment:
Q  9 gaagaaaatagtgtgtagggggagcatgtggatgtttcatcggatgaaatattt 62  Q
    |||||||||||||||||||||||||| || | ||||||||| ||||||| ||||    
T  367 gaagaaaatagtgtgtagggggagcaagtagctgtttcatctgatgaaacattt 420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 164
Target Start/End: Original strand, 470 - 558
Alignment:
Q  76 actgcagccggaattcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttatcacatgtg 164  Q
    |||||||||||| |   ||||| |||||||||||||| |||||| | |||||||||||||||| ||||  | ||| ||||||| |||||    
T  470 actgcagccggattattaattcttcggcagttaactgccgagggagcaaaatcgtattttactcgtgtttctcagtcttatcaaatgtg 558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 1229 - 1296
Alignment:
Q  89 ttcaaattcctcggcagttaactgtcgagggggtaaaatcgtattttactagtgtgacacagccttat 156  Q
    |||||||||||||||||||||||| |||||||  |||| ||||  ||||| ||||| | |||||||||    
T  1229 ttcaaattcctcggcagttaactgccgaggggacaaaaacgtaaattactcgtgtgcctcagccttat 1296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0513 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0513
Description:

Target: scaffold0513; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 8252 - 8194
Alignment:
Q  60 ttttcctcagcagtatactgcagccggaattcaaattcctcggcagttaactgtcgagg 118  Q
    ||||| ||||||||  |||||| ||||| ||||||||||| |||||||||||| |||||    
T  8252 ttttcttcagcagttaactgcatccggatttcaaattccttggcagttaactgccgagg 8194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University