View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14295_high_23 (Length: 337)
Name: NF14295_high_23
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14295_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 206 - 321
Target Start/End: Original strand, 7094027 - 7094141
Alignment:
| Q |
206 |
atcttgaggcaaggcaacttatgtgtttggatcatctattgattactcattaaatcttgattgttagattaatttaatagcttggagtactatatctttt |
305 |
Q |
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| T |
7094027 |
atcttgaggcaaggcaacttatgtgtttggatcatcttcggattactcattaaatcttgattgttagattaatttaataggttggagtactatatc-ttt |
7094125 |
T |
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| Q |
306 |
attttacctaaaattg |
321 |
Q |
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| T |
7094126 |
attttacctaaaattg |
7094141 |
T |
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Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 7093910 - 7093987
Alignment:
| Q |
89 |
cgaaacaatgacatgagagaaacaaatgatgagccgtctctaagcctccacaacaaatcacacaaaatggccttctag |
166 |
Q |
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| T |
7093910 |
cgaaacaatgacatgagagaaacaaatgatgagccgtctctaagcctccacaacaaatcacacaaaatggccttctag |
7093987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 25252499 - 25252436
Alignment:
| Q |
89 |
cgaaacaatgacatgagagaaacaaatgatgagccgtctctaagcctccacaacaaatcacaca |
152 |
Q |
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| T |
25252499 |
cgaaacaaggacatgatagaaaccaatgttgagccgtctctaagcctccgcaaccagtcacaca |
25252436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 23810964 - 23811011
Alignment:
| Q |
90 |
gaaacaatgacatgagagaaacaaatgatgagccgtctctaagcctcc |
137 |
Q |
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| T |
23810964 |
gaaacaaggacaggagagaaacaaatggtgagccgtctctaagcctcc |
23811011 |
T |
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