View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14295_high_24 (Length: 327)
Name: NF14295_high_24
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14295_high_24 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 327
Target Start/End: Complemental strand, 35399170 - 35398856
Alignment:
| Q |
13 |
atactcaaaacctagatgctacaaacctacaacacattacgaacgtggcaattataaggcagagcaaaattgcaaaatcacttaaacataaacaagttcg |
112 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35399170 |
atactcaaaacctagatgctacaaacctaaaacacattacgaacgtggcaattataaggcagagcaaaattgcaaaatcacttaaacataaacaagttcg |
35399071 |
T |
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| Q |
113 |
aactgcatatcttaagattctattcagaaatcagattggtagagtagagcaaaataatgttaataattgatttaatttgttttagagaaataattgagtt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35399070 |
aactgcatatcttaagattctattcagaaatcagattggtagagtagggcaaaataatgttaataattgatttaatttgttttagagaaataattgagtt |
35398971 |
T |
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| Q |
213 |
aattaatctacatgatcaatgttcttgcaaaccttgattaggtcaaaagtcaaaagacaactaaaagttacttttatagcattagcaaagagccatagaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35398970 |
aattaatctacatgatcaatgttcttgcaaaccttgattaggtcaaaagtcaaaagacaactaaaagttacttttatagcattagcaaagagccatagaa |
35398871 |
T |
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| Q |
313 |
gtagaactagttatt |
327 |
Q |
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||||||||||||||| |
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| T |
35398870 |
gtagaactagttatt |
35398856 |
T |
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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 11321316 - 11321405
Alignment:
| Q |
13 |
atactcaaaacctagatgctacaaacctacaacacattacgaacgtggcaattataaggcagagcaaaattgcaaaatcacttaaacata |
102 |
Q |
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| T |
11321316 |
atactcaaaacctagatgctacaagcctacatcacatcacgaacgcttcaattataaggcagagcaaaatcgtgaaatctcttaaacata |
11321405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 9323782 - 9323690
Alignment:
| Q |
13 |
atactcaaaacctagatgctacaaacctacaacacattacgaacgtggcaattataaggcagagcaaaattgcaaaatcacttaaacataaac |
105 |
Q |
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|||||||||| |||||| ||||| || ||| ||||| || || | | |||||||||||||||||||||| |||| |||||||||| |||||| |
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| T |
9323782 |
atactcaaaatatagatgttacaagccaacatcacatcacaaatgcgccaattataaggcagagcaaaatcgcaatatcacttaaatataaac |
9323690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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