View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14295_high_28 (Length: 309)
Name: NF14295_high_28
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14295_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 37578464 - 37578756
Alignment:
| Q |
1 |
agatattactgttatttctctgctaacttccactggtaacagtcttgctgctggttacaaatcactcactgcgatgtcatataaaccgatacaagtttaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37578464 |
agatattactgttatttctctgctaacttccactggtaacagtcttgctgctggttacaaatcactcactgcgatgtcatataaaccgatacaagttcaa |
37578563 |
T |
|
| Q |
101 |
gcataaaaaataatgttacaactacagtatttccttacaaaacgtaaacaaaaaatagcatgtctccttgcttgattacaaatcagtgttctcaaaagac |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37578564 |
gcataacaaataatgttacaactacagtatttccttacaaaacgtaaacaaaaaatagcatctctccttgcttgattacaaatcagtgttctcaaaagac |
37578663 |
T |
|
| Q |
201 |
accagttcatttttattatcttccaaccagtaatgagctgcacaagtcaagaagatagcttgcttttcgagatgacatcaaaagatattccat |
293 |
Q |
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| T |
37578664 |
accagttcatttttattatcttccaaccagtaatgagctgcacaagtcaagaagatagcttgcttttcgagatgacatcaaaagatattccat |
37578756 |
T |
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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 27201987 - 27202052
Alignment:
| Q |
231 |
taatgagctgcacaagtcaagaagatagcttgcttttcgagatgacatcaaaagatattccatatt |
296 |
Q |
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|||||||||| | ||||||||||| ||||||||||| |||||||||||||||||||||| ||||| |
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| T |
27201987 |
taatgagctgtagcagtcaagaagaaagcttgctttttgagatgacatcaaaagatattctatatt |
27202052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 27217774 - 27217836
Alignment:
| Q |
231 |
taatgagctgcacaagtcaagaagatagcttgcttttcgagatgacatcaaaagatattccat |
293 |
Q |
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||||||||||||| |||||||| |||||| || |||||||| ||| ||| ||||||||||||| |
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| T |
27217774 |
taatgagctgcaccagtcaagatgatagcatgattttcgagttgatatctaaagatattccat |
27217836 |
T |
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