View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14295_high_31 (Length: 300)
Name: NF14295_high_31
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14295_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 281
Target Start/End: Original strand, 2162132 - 2162398
Alignment:
| Q |
15 |
caagaaagactatacatagctgaatagatataacaaaaatgatgatcaaggcagtcacgacagtctcattcaattcaccatcagctgatgacatctttag |
114 |
Q |
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| T |
2162132 |
caagatagactatacatagctgaatagatataacaaaactgatgatcaaggcagtcacgacagtctcattcaattcaccatcagctgatgacatctttag |
2162231 |
T |
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| Q |
115 |
tgcagggaagataatcaacagcaagcataatattactgaggtcacgaatacacgccaaagcctctgttcatcatcggtatgatcgtacctatatatttat |
214 |
Q |
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| T |
2162232 |
tgcagggaagataatcaacagcaagcataatattactgaggtcacgaatacacgccaaagcctctgttcatcatcggtatgatcgtacctatatatttat |
2162331 |
T |
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| Q |
215 |
aattataacgtgttcatacgattagatacttacacacctaacaaaggatagtaacacacattctaaa |
281 |
Q |
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| T |
2162332 |
aattataatgtgttcatacgattagatacttacacacctaacaaaggttagtagcacacattctaaa |
2162398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 2164385 - 2164479
Alignment:
| Q |
55 |
gatgatcaaggcagtcacgacagtctcattcaattcaccatcagctgatgacatctttagtgcagggaagataatcaacagcaagcataatatta |
149 |
Q |
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| T |
2164385 |
gatgatcaagacatccacgacaatcatattgaatttaccatcataagatgacatctttagggcagggaagataatcaatatcaagcataatatta |
2164479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 154
Target Start/End: Original strand, 2181778 - 2181855
Alignment:
| Q |
77 |
gtctcattcaattcaccatcagctgatgacatctttagtgcagggaagataatcaacagcaagcataatattactgag |
154 |
Q |
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| T |
2181778 |
gtctcattgaatttaccaccatttaatgacatctttaatgcagggaagataatcaatagcaaccatagtattattgag |
2181855 |
T |
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