View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14295_high_38 (Length: 253)
Name: NF14295_high_38
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14295_high_38 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 54268642 - 54268406
Alignment:
| Q |
17 |
aattcactactccaaattcaaggacatttaggtggtaatcctaatttaagcccccaaaaaagctgtttacctcctacaccacttttacttgcaacttcat |
116 |
Q |
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| T |
54268642 |
aattcactactccaaattcaaggacatttaggtggtaatcctaatttaagcccccaaaaaagctgtttacctcctacaccacttttacttgcaacttcat |
54268543 |
T |
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| Q |
117 |
ttacacaactagagcaaaatgaccaattactctcacattctcataatattttcccattacctacattccaaccttccttctcaatgatcaatcacaccac |
216 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54268542 |
ttacacaactagaccaaaatgaccaattactctcacattctcataatattttcccattacctacattccaaccttccttctcaatgatcaatcacaccac |
54268443 |
T |
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| Q |
217 |
cagaaacaacaataatagtccatcttcagaactactc |
253 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
54268442 |
cagaaacaacaataatagtccatcttcagaactactc |
54268406 |
T |
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