View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14295_high_45 (Length: 238)

Name: NF14295_high_45
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14295_high_45
NF14295_high_45
[»] chr2 (6 HSPs)
chr2 (1-222)||(35105749-35105970)
chr2 (1-189)||(35183731-35183919)
chr2 (1-189)||(35177733-35177921)
chr2 (37-189)||(35169442-35169594)
chr2 (9-192)||(35054866-35055049)
chr2 (147-186)||(17661082-17661121)
[»] chr7 (4 HSPs)
chr7 (83-189)||(25436251-25436357)
chr7 (48-189)||(25478733-25478874)
chr7 (134-183)||(25484533-25484582)
chr7 (83-183)||(25442531-25442631)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 35105970 - 35105749
Alignment:
Q  1 agaatccctttcgccgcaacttcttcaagaaattgaaaattctcggatttctattgttgttttctctgaaagatatgctgagtcaacatggtgtttggaa 100  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  35105970 agaatccctttcgccgcaacttcttcaagcaattcaaaattctcgggtttctattgttgtcttctctgaaagatatgccgagtcaacatggtgtttggaa 35105871  T
Q  101 gagatggctactgttgctgactgccgtaaaagattgaaacaaactgttttccctgttttttatgatgtcgatccatcacatgttcgaaagcatatcgagg 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||    
T  35105870 gagatggctactgttgctgaatgccgtaaaagattgaaacaaactgttttccctgttttttatgatgttgatccatctcatgttcgaaagcatatcgggg 35105771  T
Q  201 ttttcaaagctaataattcaca 222  Q
    ||||||||||||||||||||||    
T  35105770 ttttcaaagctaataattcaca 35105749  T

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Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 35183919 - 35183731
Alignment:
Q  1 agaatccctttcgccgcaacttcttcaagaaattgaaaattctcggatttctattgttgttttctctgaaagatatgctgagtcaacatggtgtttggaa 100  Q
    |||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||||||| |||||| |||  ||||| ||||||||||  |||||||||    
T  35183919 agaatccctttcgccgcaacttctacaagcaattcaaagttctcggatttctattgttgtcttctctaaaaattatgcggagtcaacattatgtttggaa 35183820  T
Q  101 gagatggctactgttgctgactgccgtaaaagattgaaacaaactgttttccctgttttttatgatgtcgatccatcacatgttcgaaa 189  Q
    |||||||| ||| ||||||| |  | || |  ||||||||| |||||||||||| |||||||||||| ||||||||| ||||| |||||    
T  35183819 gagatggccactattgctgaatatcatacagaattgaaacagactgttttccctattttttatgatgccgatccatctcatgtacgaaa 35183731  T

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Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 35177921 - 35177733
Alignment:
Q  1 agaatccctttcgccgcaacttcttcaagaaattgaaaattctcggatttctattgttgttttctctgaaagatatgctgagtcaacatggtgtttggaa 100  Q
    ||||| |||||||| ||||||||  |||| ||||| |||||| ||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||    
T  35177921 agaatgcctttcgctgcaacttcgacaagcaattgcaaattcacggatatctatcgttgtcttctcagaaagatatgctgagtcaacatggtgtttggaa 35177822  T
Q  101 gagatggctactgttgctgactgccgtaaaagattgaaacaaactgttttccctgttttttatgatgtcgatccatcacatgttcgaaa 189  Q
    || ||||||||| ||| ||| || ||||  |  ||   |||||||||||||||||||||||||||| || ||||||| ||||| |||||    
T  35177821 gaaatggctactattgttgaatgtcgtagcaatttcttacaaactgttttccctgttttttatgatatcaatccatctcatgtacgaaa 35177733  T

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Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 189
Target Start/End: Complemental strand, 35169594 - 35169442
Alignment:
Q  37 aaattctcggatttctattgttgttttctctgaaagatatgctgagtcaacatggtgtttggaagagatggctactgttgctgactgccgtaaaagattg 136  Q
    |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||  ||| |||  |  ||||    |||    
T  35169594 aaattcacggatttctattgttgtcttctcagaaagatatgctgagtcaacatggtgtttggaagaaatggctaccattgttgaaagatgtaacgatttg 35169495  T
Q  137 aaacaaactgttttccctgttttttatgatgtcgatccatcacatgttcgaaa 189  Q
     ||| ||  ||||||||||||||||||||| | |||||||| ||||| |||||    
T  35169494 caacgaatagttttccctgttttttatgatattgatccatctcatgtacgaaa 35169442  T

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Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 35055049 - 35054866
Alignment:
Q  9 tttcgccgcaacttcttcaagaaattgaaaattctcggatttctattgttgttttctctgaaagatatgctgagtcaacatggtgtttggaagagatggc 108  Q
    |||| ||||| ||||| |||| ||||  |||||| || |||| ||||||||| |||||| ||| |||||| || ||||| ||||||||||||||||||||    
T  35055049 tttcaccgcagcttctacaagcaattcgaaattcgcgaatttttattgttgtcttctctaaaacatatgccgaatcaacttggtgtttggaagagatggc 35054950  T
Q  109 tactgttgctgactgccgtaaaagattgaaacaaactgttttccctgttttttatgatgtcgatccatcacatgttcgaaagca 192  Q
    | |  ||||||| ||  || |    || |||||||| ||||||||| ||||||||||||| ||||||||  |||| ||||||||    
T  35054949 tgcaattgctgattgttgtgagtatttcaaacaaacagttttccctattttttatgatgttgatccatctgatgtacgaaagca 35054866  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 17661082 - 17661121
Alignment:
Q  147 ttttccctgttttttatgatgtcgatccatcacatgttcg 186  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  17661082 ttttgcctgttttttatgatgtcgatccatcacaagttcg 17661121  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 189
Target Start/End: Complemental strand, 25436357 - 25436251
Alignment:
Q  83 tcaacatggtgtttggaagagatggctactgttgctgactgccgtaaaagattgaaacaaactgttttccctgttttttatgatgtcgatccatcacatg 182  Q
    ||||||||||||||||| || |||||| || ||| ||| |   | |||| ||||||||||  ||| ||||||||||||||||||||||||||||| ||||    
T  25436357 tcaacatggtgtttggatgaaatggctgctattgatgaatctagaaaaaaattgaaacaagttgtattccctgttttttatgatgtcgatccatctcatg 25436258  T
Q  183 ttcgaaa 189  Q
    |||||||    
T  25436257 ttcgaaa 25436251  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 189
Target Start/End: Complemental strand, 25478874 - 25478733
Alignment:
Q  48 tttctattgttgttttctctgaaagatatgctgagtcaacatggtgtttggaagagatggctactgttgctgactgccgtaaaagattgaaacaaactgt 147  Q
    ||||||| ||||| ||||| |||   |||||||  ||||| ||||||||||| || ||| ||  | |||| ||||||| || || | | ||||||| |||    
T  25478874 tttctatagttgtcttctcagaagattatgctggctcaacttggtgtttggatgaaatgactgttattgccgactgccttacaaaactaaaacaaattgt 25478775  T
Q  148 tttccctgttttttatgatgtcgatccatcacatgttcgaaa 189  Q
    ||| |||||||| ||| ||||||||||||| ||||| |||||    
T  25478774 tttacctgttttctattatgtcgatccatctcatgtccgaaa 25478733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 25484533 - 25484582
Alignment:
Q  134 ttgaaacaaactgttttccctgttttttatgatgtcgatccatcacatgt 183  Q
    |||||||||  |||||||||||||||||||||||| |||||||| |||||    
T  25484533 ttgaaacaagttgttttccctgttttttatgatgttgatccatctcatgt 25484582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 25442531 - 25442631
Alignment:
Q  83 tcaacatggtgtttggaagagatggctactgttgctgactgccgtaaaagattgaaacaaactgttttccctgttttttatgatgtcgatccatcacatg 182  Q
    ||||||||||||||||| || |||||| || ||| ||| | | ||| |||||||||||||  |||||| ||||| || |||||  | |||||||| ||||    
T  25442531 tcaacatggtgtttggatgaaatggctgctattgatgaatccagtagaagattgaaacaagttgtttttcctgtcttctatgacattgatccatctcatg 25442630  T
Q  183 t 183  Q
    |    
T  25442631 t 25442631  T

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