View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14295_high_7 (Length: 529)

Name: NF14295_high_7
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14295_high_7
NF14295_high_7
[»] chr1 (11 HSPs)
chr1 (48-460)||(33409827-33410242)
chr1 (299-457)||(7493393-7493550)
chr1 (299-457)||(15757402-15757559)
chr1 (301-457)||(10619791-10619946)
chr1 (341-457)||(48770403-48770517)
chr1 (301-420)||(44429777-44429895)
chr1 (303-369)||(27773553-27773619)
chr1 (304-369)||(50099606-50099671)
chr1 (303-361)||(43410937-43410995)
chr1 (303-361)||(44592587-44592645)
chr1 (305-369)||(36156968-36157032)
[»] chr7 (11 HSPs)
chr7 (299-457)||(45809902-45810059)
chr7 (299-457)||(83880-84037)
chr7 (298-455)||(48609370-48609526)
chr7 (298-457)||(46211939-46212097)
chr7 (299-361)||(33335982-33336044)
chr7 (298-425)||(2826742-2826868)
chr7 (303-369)||(27571617-27571683)
chr7 (298-385)||(758566-758653)
chr7 (303-369)||(23333319-23333385)
chr7 (401-457)||(758657-758713)
chr7 (301-345)||(39719308-39719352)
[»] chr4 (13 HSPs)
chr4 (298-457)||(13768523-13768681)
chr4 (298-457)||(46721864-46722022)
chr4 (302-460)||(43892782-43892939)
chr4 (301-420)||(32824565-32824683)
chr4 (303-369)||(27512922-27512988)
chr4 (303-369)||(32595113-32595179)
chr4 (122-181)||(4299381-4299440)
chr4 (303-369)||(39606312-39606378)
chr4 (304-369)||(4608124-4608189)
chr4 (304-369)||(18493807-18493872)
chr4 (304-369)||(22375912-22375977)
chr4 (304-369)||(23237532-23237597)
chr4 (304-369)||(54508585-54508650)
[»] chr2 (13 HSPs)
chr2 (298-457)||(10585095-10585253)
chr2 (298-460)||(36314473-36314635)
chr2 (298-442)||(1593008-1593151)
chr2 (298-420)||(1043293-1043414)
chr2 (298-420)||(9190282-9190403)
chr2 (345-460)||(12563737-12563851)
chr2 (298-457)||(5382587-5382749)
chr2 (341-457)||(7494759-7494874)
chr2 (364-457)||(22333417-22333509)
chr2 (304-369)||(2096103-2096168)
chr2 (235-281)||(7494676-7494722)
chr2 (303-361)||(41732634-41732692)
chr2 (305-445)||(19590838-19590978)
[»] chr6 (7 HSPs)
chr6 (298-457)||(29363807-29363965)
chr6 (298-457)||(3886135-3886293)
chr6 (302-455)||(34729504-34729656)
chr6 (298-434)||(583244-583379)
chr6 (298-348)||(30386832-30386882)
chr6 (303-354)||(13703074-13703125)
chr6 (304-369)||(7590510-7590575)
[»] chr3 (13 HSPs)
chr3 (298-457)||(30342658-30342816)
chr3 (298-455)||(17653252-17653408)
chr3 (301-457)||(40285633-40285788)
chr3 (298-457)||(46823529-46823687)
chr3 (302-457)||(35734341-35734494)
chr3 (375-428)||(35734267-35734320)
chr3 (303-385)||(37057524-37057606)
chr3 (304-369)||(22775275-22775340)
chr3 (304-369)||(26769836-26769901)
chr3 (126-182)||(4254647-4254703)
chr3 (303-369)||(37224390-37224456)
chr3 (393-457)||(21295751-21295815)
chr3 (237-281)||(35734518-35734562)
[»] chr8 (6 HSPs)
chr8 (299-460)||(21441853-21442013)
chr8 (298-437)||(18606013-18606151)
chr8 (298-457)||(41323444-41323602)
chr8 (298-457)||(4072490-4072648)
chr8 (121-180)||(1948995-1949054)
chr8 (237-281)||(41323622-41323666)
[»] scaffold0049 (2 HSPs)
scaffold0049 (298-457)||(14997-15155)
scaffold0049 (302-457)||(46873-47027)
[»] chr5 (9 HSPs)
chr5 (299-457)||(17769239-17769396)
chr5 (298-457)||(39685592-39685750)
chr5 (302-457)||(8403304-8403458)
chr5 (304-425)||(13517244-13517363)
chr5 (303-369)||(6735911-6735977)
chr5 (303-369)||(39570831-39570897)
chr5 (114-175)||(30737355-30737416)
chr5 (127-175)||(30702240-30702288)
chr5 (237-281)||(17769417-17769461)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 48 - 460
Target Start/End: Complemental strand, 33410242 - 33409827
Alignment:
Q  48 aggaaaagagttatagtaatctggcattcagtaaagaggtaagtgaagtttgatgaagaatattttcacctaaaaatcgaactcgggttctcctaaacga 147  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||| ||||||| | ||||||||||||||||| |    
T  33410242 aggaaaagagttatagtaatctgacattcagtaaagaggtaagtgaagtctgatcaagaatattttcacccaaaaatcaagctcgggttctcctaaacaa 33410143  T
Q  148 ttccttctttggtgaagctcattaaccatttgagttcg-------ggttaattcatttggagaaaaatgatctgaggtataacatgatcatctaatgcag 240  Q
    |||||||||||||| |||||||||||||||| ||||||       |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  33410142 ttccttctttggtggagctcattaaccatttaagttcgatcacttggttaattcatttggagaaaaatgatatgaggtataacatgatcatctaacgcag 33410043  T
Q  241 gggcggatgctagtataaggtaggggtagccattgcta-cccnnnnnnnta-nnnnnnngagcgagtaggtatatttttatatctagccaccccgaataa 338  Q
    || |  |||||||||||||| ||||||||||||||| | |||       ||        ||||||||||||||||||||||||||| |||||||          
T  33410042 ggacaaatgctagtataagggaggggtagccattgccaccccaaaaaaatatattttttgagcgagtaggtatatttttatatctaaccacccc------ 33409949  T
Q  339 tatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatttagcttccggtcgaacttcaaatgatttaatcttgtcgtat 438  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  33409948 tatatatttaactaccctaagttttattttacgggaaataactttttcccatccttatttagcttccgatcgaacttcaaatgatttaatcttatcgtat 33409849  T
Q  439 aggaaccggaagattaacatcc 460  Q
    ||||||| ||||||||||||||    
T  33409848 aggaaccagaagattaacatcc 33409827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 299 - 457
Target Start/End: Original strand, 7493393 - 7493550
Alignment:
Q  299 agcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttattt 398  Q
    ||||||||||||||||||||||| |||| ||| | ||||||||||||||  |||||| ||||| ||||||| | ||||||| ||||||||||| ||||||    
T  7493393 agcgagtaggtatatttttatatttagctacctccaataatatatatttggctaccccaagttttattttaagtgaaataa-ttttttccatctttattt 7493491  T
Q  399 agcttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaaca 457  Q
    ||||| |||||||||||||||| |||||||| ||||||||||||||||||||| |||||    
T  7493492 agctttcggtcgaacttcaaattatttaatcatgtcgtataggaaccggaagactaaca 7493550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 299 - 457
Target Start/End: Original strand, 15757402 - 15757559
Alignment:
Q  299 agcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttattt 398  Q
    ||||||||||||||||||||||| || | ||||| |||||||||||||||||||||| |||||  ||||||   ||||||| | ||||| ||| ||||||    
T  15757402 agcgagtaggtatatttttatatttatctacccctaataatatatatttaactaccccaagtttaattttagatgaaataa-tattttctatctttattt 15757500  T
Q  399 agcttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaaca 457  Q
    | |||||| ||||||||||||| |||| ||  ||| ||||| ||| || ||||||||||    
T  15757501 aacttccgatcgaacttcaaattatttgataatgttgtataagaatcgaaagattaaca 15757559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 301 - 457
Target Start/End: Original strand, 10619791 - 10619946
Alignment:
Q  301 cgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatttag 400  Q
    ||||||||||||||||||||| |||| ||||| ||||||||||||||| |||||| |||||  ||||||   ||||||| ||||||| ||| |||||||     
T  10619791 cgagtaggtatatttttatatttagctacccctaataatatatatttagctaccccaagtttaattttagatgaaataa-ttttttctatctttatttaa 10619889  T
Q  401 cttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaaca 457  Q
    ||||| |||| ||||||||| |||| ||  ||| ||||| ||| || ||||||||||    
T  10619890 cttccagtcgtacttcaaattatttgataatgttgtataagaatcgaaagattaaca 10619946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 341 - 457
Target Start/End: Original strand, 48770403 - 48770517
Alignment:
Q  341 tatatttaactaccctaagttctattttatgggaaataacttttttccatccttatttagcttccggtcgaacttcaaatgatttaatcttgtcgtatag 440  Q
    |||||||| |||||| ||||| ||||||| | ||||||| ||||||| ||| ||||| || ||| ||||||||||||||| |||||||| ||||||||||    
T  48770403 tatatttagctaccccaagttttattttaagtgaaataa-ttttttctatctttattcagtttc-ggtcgaacttcaaattatttaatcatgtcgtatag 48770500  T
Q  441 gaaccggaagattaaca 457  Q
    |||||| |||| |||||    
T  48770501 gaaccgaaagaataaca 48770517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 301 - 420
Target Start/End: Complemental strand, 44429895 - 44429777
Alignment:
Q  301 cgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatttag 400  Q
    ||||||||||||||||||||| |||| ||||| |||||||| |||||  |||||| || ||  |||||| | ||||||| ||||| | ||| |||||||     
T  44429895 cgagtaggtatatttttatatttagctacccctaataatatttatttggctaccccaaatttaattttaagtgaaataa-tttttactatctttatttaa 44429797  T
Q  401 cttccggtcgaacttcaaat 420  Q
    ||||||||||||||||||||    
T  44429796 cttccggtcgaacttcaaat 44429777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 369
Target Start/End: Original strand, 27773553 - 27773619
Alignment:
Q  303 agtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctatttta 369  Q
    ||||||||||||||||| | |||| ||||| ||||||||||||||  |||||| |||||| ||||||    
T  27773553 agtaggtatatttttatgtttagctacccctaataatatatatttgcctaccccaagttcgatttta 27773619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 304 - 369
Target Start/End: Original strand, 50099606 - 50099671
Alignment:
Q  304 gtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctatttta 369  Q
    |||||||||||||||| | |||| ||||| |||||||||||||| ||||||| | |||| ||||||    
T  50099606 gtaggtatatttttatgtttagctacccctaataatatatatttgactaccccaggttcgatttta 50099671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 361
Target Start/End: Original strand, 43410937 - 43410995
Alignment:
Q  303 agtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagtt 361  Q
    ||||||||||||||||||| |||| | ||| ||||||||||||||   |||||||||||    
T  43410937 agtaggtatatttttatatttagctatccctaataatatatatttggttaccctaagtt 43410995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 361
Target Start/End: Original strand, 44592587 - 44592645
Alignment:
Q  303 agtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagtt 361  Q
    ||||||||||||||||| | |||| ||||| ||||||||||||||  |||||| |||||    
T  44592587 agtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagtt 44592645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 36157032 - 36156968
Alignment:
Q  305 taggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctatttta 369  Q
    |||||||||||||||   |||| ||||| ||||||||||||||  |||||| |||||| ||||||    
T  36157032 taggtatatttttatgcttagctacccctaataatatatatttggctaccccaagttcaatttta 36156968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 299 - 457
Target Start/End: Complemental strand, 45810059 - 45809902
Alignment:
Q  299 agcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttattt 398  Q
    ||||||||||||||||||||||| |||| ||||| ||||||||||||||  |||||| ||||| ||||||| | ||||||| ||||||||||| ||||||    
T  45810059 agcgagtaggtatatttttatatttagctacccccaataatatatatttggctaccccaagttttattttaagtgaaataa-ttttttccatctttattt 45809961  T
Q  399 agcttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaaca 457  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||    
T  45809960 agcttccggtcgaacttcaaattatttaatcatgtcgtataggaaccggaagactaaca 45809902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 299 - 457
Target Start/End: Complemental strand, 84037 - 83880
Alignment:
Q  299 agcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttattt 398  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||||||||  ||||| || ||  |||||| | ||||||| ||||| | ||| ||||||    
T  84037 agcgagtaggtatatttttatatttagctacccctaataatatatatttagttaccccaaatttaattttaagtgaaataaattttt-ctatctttattt 83939  T
Q  399 agcttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaaca 457  Q
    | |||||||||||||||||||| |||| ||  |||||||||||||||| ||||||||||    
T  83938 aacttccggtcgaacttcaaattatttgataatgtcgtataggaaccgaaagattaaca 83880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 298 - 455
Target Start/End: Complemental strand, 48609526 - 48609370
Alignment:
Q  298 gagcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatt 397  Q
    |||||||| ||||||||||||||| || | ||||| ||||||||||||||| |||||| |||||  |||||| | ||||||| ||||||| ||| |||||    
T  48609526 gagcgagtgggtatatttttatatttaactacccctaataatatatatttagctaccccaagtttaattttaagtgaaataa-ttttttctatctttatt 48609428  T
Q  398 tagcttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaa 455  Q
    || ||| |||||||||||||||| |||| ||  |||||||||||||||| ||||||||    
T  48609427 taactttcggtcgaacttcaaattatttgataatgtcgtataggaaccgaaagattaa 48609370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 298 - 457
Target Start/End: Complemental strand, 46212097 - 46211939
Alignment:
Q  298 gagcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatt 397  Q
    |||||||||||||||||||||||| |||| ||  | ||||||||||||||| |||||| || ||  |||||| | ||||||| |||||||  || |||||    
T  46212097 gagcgagtaggtatatttttatatttagctacttctaataatatatatttagctaccccaaatttaattttaagtgaaataa-ttttttctttctttatt 46211999  T
Q  398 tagcttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaaca 457  Q
    || |||||||||||||||||||| |||| ||  |||||||||||||||| ||||||||||    
T  46211998 taacttccggtcgaacttcaaattatttgataatgtcgtataggaaccgaaagattaaca 46211939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 33336044 - 33335982
Alignment:
Q  299 agcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagtt 361  Q
    |||| |||||||||| ||||||| |||| ||||| |||||||||||||||||||||| |||||    
T  33336044 agcgggtaggtatatatttatatttagctacccctaataatatatatttaactaccccaagtt 33335982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 298 - 425
Target Start/End: Original strand, 2826742 - 2826868
Alignment:
Q  298 gagcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatt 397  Q
    |||||| ||||||||||||||||| |||| | | | ||||||||||||||| |||| | |||||  ||| || | ||||||| ||||||| ||| ||| |    
T  2826742 gagcgattaggtatatttttatatttagctatctctaataatatatatttagctactccaagtttaattgtaagtgaaataa-ttttttctatctttaat 2826840  T
Q  398 tagcttccggtcgaacttcaaatgattt 425  Q
    || ||||||||| || ||||||| ||||    
T  2826841 taccttccggtcaaaattcaaattattt 2826868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 369
Target Start/End: Complemental strand, 27571683 - 27571617
Alignment:
Q  303 agtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctatttta 369  Q
    ||||||||||||||||| | |||| ||||| ||||||||||||||  |||||||| |||| ||||||    
T  27571683 agtaggtatatttttatgtttagctacccctaataatatatatttggctaccctatgttcgatttta 27571617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 385
Target Start/End: Original strand, 758566 - 758653
Alignment:
Q  298 gagcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttt 385  Q
    |||| ||||||||||||||||||| || | ||||  ||||||||||||||| |||||| || ||  |||||| | ||||||| |||||    
T  758566 gagcaagtaggtatatttttatatttatctacccttaataatatatatttagctaccccaaatttaattttaagtgaaataatttttt 758653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 369
Target Start/End: Complemental strand, 23333385 - 23333319
Alignment:
Q  303 agtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctatttta 369  Q
    ||||||||||||||||| | |||| ||||| ||||||||||||||  |||| | |||||| ||||||    
T  23333385 agtaggtatatttttatgtttagctacccctaataatatatatttggctactccaagttcgatttta 23333319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 457
Target Start/End: Original strand, 758657 - 758713
Alignment:
Q  401 cttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaaca 457  Q
    ||| |||||||||||||||| |||| ||  |||| ||||||||||| ||||||||||    
T  758657 ctttcggtcgaacttcaaattatttgataatgtcatataggaaccgaaagattaaca 758713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 39719308 - 39719352
Alignment:
Q  301 cgagtaggtatatttttatatctagccaccccgaataatatatat 345  Q
    ||||||||||||||||||||| |||| | ||| ||||||||||||    
T  39719308 cgagtaggtatatttttatatttagctatccctaataatatatat 39719352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 298 - 457
Target Start/End: Original strand, 13768523 - 13768681
Alignment:
Q  298 gagcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatt 397  Q
    |||||||||||||||||||||||| |||| ||||| ||||||||||||||| |||||| |||||  |||||| | ||||||| ||||||| ||| |||||    
T  13768523 gagcgagtaggtatatttttatatttagctacccctaataatatatatttagctaccccaagtttaattttaagtgaaataa-ttttttctatctttatt 13768621  T
Q  398 tagcttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaaca 457  Q
    || |||||||||||||||||||| |||| ||  |||||||||||||||| ||||||||||    
T  13768622 taacttccggtcgaacttcaaattatttgataatgtcgtataggaaccgaaagattaaca 13768681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 298 - 457
Target Start/End: Original strand, 46721864 - 46722022
Alignment:
Q  298 gagcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatt 397  Q
    ||||||||||| |||||||||| | |||| ||||| ||||||||||||||| |||||| || || ||||||| | ||||||| || |||||||| |||||    
T  46721864 gagcgagtagggatatttttatttttagctacccctaataatatatatttagctaccccaaattttattttaagtgaaataa-ttctttccatctttatt 46721962  T
Q  398 tagcttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaaca 457  Q
    |||||| |||||||||||||||| |||||||| ||||||||||||||||||||| |||||    
T  46721963 tagctttcggtcgaacttcaaattatttaatcatgtcgtataggaaccggaagaataaca 46722022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 302 - 460
Target Start/End: Complemental strand, 43892939 - 43892782
Alignment:
Q  302 gagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatttagc 401  Q
    ||||| |||||||||||||| |||| ||||| ||||||||||||||| || ||| |||||  ||||||   ||||||| ||||||| ||| ||||||| |    
T  43892939 gagtatgtatatttttatatttagctacccctaataatatatatttagctgccccaagtttaattttagatgaaataa-ttttttctatctttatttaac 43892841  T
Q  402 ttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaacatcc 460  Q
    ||||| ||||||||||||| |||| ||  ||| ||||| ||| || |||||||||||||    
T  43892840 ttccgatcgaacttcaaattatttgataatgttgtataagaatcgaaagattaacatcc 43892782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 420
Target Start/End: Complemental strand, 32824683 - 32824565
Alignment:
Q  301 cgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatttag 400  Q
    ||||||||||||||||||||| || | ||||| | ||||| ||||||  ||| || || || ||||||| | ||||||| |||||| |||  |||||||     
T  32824683 cgagtaggtatatttttatatttaactacccctagtaataaatatttggctatcccaaattttattttaagtgaaataa-tttttttcatttttatttaa 32824585  T
Q  401 cttccggtcgaacttcaaat 420  Q
    ||||||||||||||||||||    
T  32824584 cttccggtcgaacttcaaat 32824565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 369
Target Start/End: Original strand, 27512922 - 27512988
Alignment:
Q  303 agtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctatttta 369  Q
    ||||||||||||||||| | |||| ||||| ||||||||||||||  |||||| |||||| ||||||    
T  27512922 agtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagttcgatttta 27512988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 369
Target Start/End: Complemental strand, 32595179 - 32595113
Alignment:
Q  303 agtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctatttta 369  Q
    ||||||||||||||||| | |||| ||||| ||||||||||||||  |||||| |||||| ||||||    
T  32595179 agtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagttcgatttta 32595113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 4299440 - 4299381
Alignment:
Q  122 aatcgaactcgggttctcctaaacgattccttctttggtgaagctcattaaccatttgag 181  Q
    ||||||||||| |||||||  | |||||| | |||||||||||||||||||||| |||||    
T  4299440 aatcgaactcgcgttctcccgagcgattcgtcctttggtgaagctcattaaccacttgag 4299381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 369
Target Start/End: Complemental strand, 39606378 - 39606312
Alignment:
Q  303 agtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctatttta 369  Q
    ||||||||||||||||| | |||| ||||| ||||||||||||||  |||||  |||||| ||||||    
T  39606378 agtaggtatatttttatgtttagctacccctaataatatatatttggctacctcaagttcgatttta 39606312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 369
Target Start/End: Original strand, 4608124 - 4608189
Alignment:
Q  304 gtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctatttta 369  Q
    |||||||||||||||| | |||| ||||| ||||||||||||||  |||||  |||||| ||||||    
T  4608124 gtaggtatatttttatgtttagctacccctaataatatatatttggctacctcaagttcgatttta 4608189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 369
Target Start/End: Complemental strand, 18493872 - 18493807
Alignment:
Q  304 gtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctatttta 369  Q
    |||||||||||||||| | |||| ||||| ||||||||||||||  |||||| | |||| ||||||    
T  18493872 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgatttta 18493807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 369
Target Start/End: Complemental strand, 22375977 - 22375912
Alignment:
Q  304 gtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctatttta 369  Q
    |||||||||||||||| | |||| ||||| ||||||||||||||  |||||| | |||| ||||||    
T  22375977 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgatttta 22375912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 369
Target Start/End: Complemental strand, 23237597 - 23237532
Alignment:
Q  304 gtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctatttta 369  Q
    |||||||||||||||| | |||| ||||| ||||||||||||||  || ||| |||||| ||||||    
T  23237597 gtaggtatatttttatgtttagctacccctaataatatatatttggctgccccaagttcgatttta 23237532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 369
Target Start/End: Complemental strand, 54508650 - 54508585
Alignment:
Q  304 gtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctatttta 369  Q
    |||||||||||||||| | |||| ||||| ||||||||||||||  |||||| | |||| ||||||    
T  54508650 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaggttcgatttta 54508585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 298 - 457
Target Start/End: Original strand, 10585095 - 10585253
Alignment:
Q  298 gagcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatt 397  Q
    ||||||||||| |||||||||| | |||| ||||| ||||||||||||||| ||| || || || ||||||| | ||||||| || |||||||| |||||    
T  10585095 gagcgagtagggatatttttatttttagctacccctaataatatatatttagctatcccaaattttattttaagtgaaataa-ttctttccatctttatt 10585193  T
Q  398 tagcttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaaca 457  Q
    |||||| |||||||||||||||| |||||||| ||||||||||||||||||||| |||||    
T  10585194 tagctttcggtcgaacttcaaattatttaatcatgtcgtataggaaccggaagaataaca 10585253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 298 - 460
Target Start/End: Complemental strand, 36314635 - 36314473
Alignment:
Q  298 gagcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccct-aagttctattttatgggaaataacttttttccatccttat 396  Q
    |||||||||||||||||||||||| |||  ||||| ||||||||||||||  ||||||  ||||| |||||||   ||||||| ||||||||||| ||||    
T  36314635 gagcgagtaggtatatttttatatttagttacccctaataatatatatttggctacccccaagttttattttaaatgaaataa-ttttttccatctttat 36314537  T
Q  397 ttagcttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaacatcc 460  Q
    ||| ||||||||| ||||| |||| ||| |||| |||||||||||| ||| |||| ||||||||    
T  36314536 ttaacttccggtcaaactttaaattattcaatcatgtcgtataggatccgaaagaataacatcc 36314473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 298 - 442
Target Start/End: Complemental strand, 1593151 - 1593008
Alignment:
Q  298 gagcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatt 397  Q
    |||||||| ||||||||||||||| |||  ||||| ||||||||||||||  |||||| ||||| |||||||   ||||||| ||||||||||| |||||    
T  1593151 gagcgagttggtatatttttatatttagttacccctaataatatatatttggctaccccaagttttattttaaatgaaataa-ttttttccatctttatt 1593053  T
Q  398 tagcttccggtcgaacttcaaatgatttaatcttgtcgtatagga 442  Q
    || ||||||||| ||||| |||| ||| |||| ||||||| ||||    
T  1593052 taacttccggtcaaactttaaattattcaatcatgtcgtacagga 1593008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 298 - 420
Target Start/End: Complemental strand, 1043414 - 1043293
Alignment:
Q  298 gagcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatt 397  Q
    |||||||||||||||||||||||| |||| ||||| |||||||| |||||  |||||| |||||  |||||| | ||||||| ||||| | ||| |||||    
T  1043414 gagcgagtaggtatatttttatatttagctacccctaataatatttatttggctaccccaagtttaattttaagtgaaataa-tttttactatctttatt 1043316  T
Q  398 tagcttccggtcgaacttcaaat 420  Q
    || ||||||||||||||||||||    
T  1043315 taacttccggtcgaacttcaaat 1043293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 298 - 420
Target Start/End: Complemental strand, 9190403 - 9190282
Alignment:
Q  298 gagcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatt 397  Q
    |||||||||||||||||||||||| |||| ||||| |||||||| |||||  |||||| |||||  |||||| | ||||||| ||||| | ||| |||||    
T  9190403 gagcgagtaggtatatttttatatttagctacccctaataatatttatttggctaccccaagtttaattttaagtgaaataa-tttttactatctttatt 9190305  T
Q  398 tagcttccggtcgaacttcaaat 420  Q
    || ||||||||||||||||||||    
T  9190304 taacttccggtcgaacttcaaat 9190282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 345 - 460
Target Start/End: Complemental strand, 12563851 - 12563737
Alignment:
Q  345 tttaactaccctaagttctattttatgggaaataacttttttccatccttatttagcttccggtcgaacttcaaatgatttaatcttgtcgtataggaac 444  Q
    |||| |||||| | ||| ||||||| | ||||||| ||||||| || ||||||||||||||||||||||||||||| | |||||| |||||||| ||||     
T  12563851 tttagctaccccaggttttattttaagtgaaataatttttttc-attcttatttagcttccggtcgaacttcaaattacttaatcatgtcgtatgggaat 12563753  T
Q  445 cggaagattaacatcc 460  Q
     |||||||||||||||    
T  12563752 tggaagattaacatcc 12563737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 298 - 457
Target Start/End: Complemental strand, 5382749 - 5382587
Alignment:
Q  298 gagcgagtaggtatatttttatatctagccaccccgaataatatatat--ttaactaccct-aagttctattttatgg-gaaataacttttttccatcct 393  Q
    |||| ||||||||||||||||||| |||| ||||| ||||||||||||  ||| ||||||  || ||  ||||||  | ||||||| ||||||| ||| |    
T  5382749 gagcaagtaggtatatttttatatttagctacccctaataatatatatatttagctacccccaaatttaattttaaagtgaaataa-ttttttctatctt 5382651  T
Q  394 tatttagcttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaaca 457  Q
    |||||| |||||||||||||||||||| |||| ||  ||||||||| |||||| ||||||||||    
T  5382650 tatttaacttccggtcgaacttcaaattatttgataatgtcgtataagaaccgaaagattaaca 5382587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 341 - 457
Target Start/End: Original strand, 7494759 - 7494874
Alignment:
Q  341 tatatttaactaccctaagttctattttatgggaaataacttttttccatccttatttagcttccggtcgaacttcaaatgatttaatcttgtcgtatag 440  Q
    |||||||| |||||| || ||  |||||| | ||||||| ||||||| ||| ||||||| |||||||||||||||||||| |||| ||  ||||||||||    
T  7494759 tatatttagctaccccaaatttaattttaagtgaaataa-ttttttctatctttatttaacttccggtcgaacttcaaattatttgataatgtcgtatag 7494857  T
Q  441 gaaccggaagattaaca 457  Q
    |||||| ||||||||||    
T  7494858 gaaccgaaagattaaca 7494874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 364 - 457
Target Start/End: Complemental strand, 22333509 - 22333417
Alignment:
Q  364 attttatgggaaataacttttttccatccttatttagcttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaaca 457  Q
    |||||||| ||||||| ||||||||||| ||||||||||||||||| |||||||||| |||| ||  ||| ||| ||||| |||||||||||||    
T  22333509 attttatgtgaaataa-ttttttccatctttatttagcttccggtcaaacttcaaattatttgataatgttgtaaaggaatcggaagattaaca 22333417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 304 - 369
Target Start/End: Original strand, 2096103 - 2096168
Alignment:
Q  304 gtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctatttta 369  Q
    |||||||||||||||| | |||| ||||| ||||||||||||||  |||||| |||||| ||||||    
T  2096103 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagttcgatttta 2096168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 7494676 - 7494722
Alignment:
Q  235 atgcaggggcggatgctagtataaggtaggggtagccattgctaccc 281  Q
    ||||||||||||||| ||||| |||| |||||||||| |||||||||    
T  7494676 atgcaggggcggatgatagtacaagggaggggtagcccttgctaccc 7494722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 361
Target Start/End: Complemental strand, 41732692 - 41732634
Alignment:
Q  303 agtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagtt 361  Q
    ||||||||| ||||||||| |||| ||||| ||||||||||||||  |||||| |||||    
T  41732692 agtaggtatgtttttatatgtagctacccctaataatatatatttggctaccccaagtt 41732634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 445
Target Start/End: Complemental strand, 19590978 - 19590838
Alignment:
Q  305 taggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatttagcttc 404  Q
    ||||||||| ||||||| ||   ||||  ||||||||| ||| |  ||||| ||||| ||||||| | | |||||  ||||| ||||||||||||| ||     
T  19590978 taggtatatatttatatttacttacccttaataatatacattcatgtaccccaagttttattttaagtggaataatcttttttcatccttatttagtttt 19590879  T
Q  405 cggtcgaacttcaaatgatttaatcttgtcgtataggaacc 445  Q
    |||||| | ||| ||| |||| || |||| |||||||||||    
T  19590878 cggtcgtatttcgaattatttgattttgttgtataggaacc 19590838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 298 - 457
Target Start/End: Complemental strand, 29363965 - 29363807
Alignment:
Q  298 gagcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatt 397  Q
    |||||||||||||||||||||||| |||| || || ||||||||||||||| |||||| || ||  |||||| | ||||||| ||||||| ||| |||||    
T  29363965 gagcgagtaggtatatttttatatttagctactcctaataatatatatttagctaccccaaatttaattttaagtgaaataa-ttttttctatctttatt 29363867  T
Q  398 tagcttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaaca 457  Q
    || |||||||||||||||||||| |||| ||  ||| |||||||||||| ||||||||||    
T  29363866 taacttccggtcgaacttcaaattatttgataatgttgtataggaaccgaaagattaaca 29363807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 298 - 457
Target Start/End: Original strand, 3886135 - 3886293
Alignment:
Q  298 gagcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatt 397  Q
    |||||||||||||||||||||||| |||| ||||| ||||||||||||||  |||||| ||||| |||||||   ||||||| ||||||||||| |||||    
T  3886135 gagcgagtaggtatatttttatatttagctacccctaataatatatatttggctaccccaagttttattttaaatgaaataa-ttttttccatctttatt 3886233  T
Q  398 tagcttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaaca 457  Q
    || ||||||||| ||||| |||| ||| |||| ||||||| |||| ||| |||| |||||    
T  3886234 taacttccggtcaaactttaaattattcaatcatgtcgtacaggatccgaaagaataaca 3886293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 302 - 455
Target Start/End: Original strand, 34729504 - 34729656
Alignment:
Q  302 gagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatttagc 401  Q
    |||| ||||||||||||||| |||| ||||| |||| |||||||||| |||||| |||||  |||||| | ||||||| ||||||| ||| ||||||| |    
T  34729504 gagtgggtatatttttatatttagctacccctaatagtatatatttagctaccccaagtttaattttaagtgaaataa-ttttttctatctttatttaac 34729602  T
Q  402 ttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaa 455  Q
    || || ||||||||||||| |||| ||  | |||||||||||||| ||||||||    
T  34729603 tttcgatcgaacttcaaattatttgataatatcgtataggaaccgaaagattaa 34729656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 298 - 434
Target Start/End: Complemental strand, 583379 - 583244
Alignment:
Q  298 gagcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatt 397  Q
    |||||||||||||||||||||||| |||| ||||| ||||||||||||||   ||||| ||||| |||||||   ||||||| ||||||||||| |||||    
T  583379 gagcgagtaggtatatttttatatttagctacccctaataatatatatttggttaccccaagttttattttaaatgaaataa-ttttttccatctttatt 583281  T
Q  398 tagcttccggtcgaacttcaaatgatttaatcttgtc 434  Q
    || ||||||||| ||||| |||| ||| |||| ||||    
T  583280 taacttccggtcaaactttaaattattcaatcatgtc 583244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 30386882 - 30386832
Alignment:
Q  298 gagcgagtaggtatatttttatatctagccaccccgaataatatatattta 348  Q
    |||||||||||||||||||||||| |||| ||||| |||||||||||||||    
T  30386882 gagcgagtaggtatatttttatatttagctacccctaataatatatattta 30386832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 354
Target Start/End: Original strand, 13703074 - 13703125
Alignment:
Q  303 agtaggtatatttttatatctagccaccccgaataatatatatttaactacc 354  Q
    ||||||||||||||||||| |||| ||||| ||||||||||||||| |||||    
T  13703074 agtaggtatatttttatatttagctacccctaataatatatatttagctacc 13703125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 304 - 369
Target Start/End: Complemental strand, 7590575 - 7590510
Alignment:
Q  304 gtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctatttta 369  Q
    |||||||||||||||| | |||| ||||| ||||||||||||||  |||||| |||||| ||||||    
T  7590575 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagttcgatttta 7590510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 298 - 457
Target Start/End: Original strand, 30342658 - 30342816
Alignment:
Q  298 gagcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatt 397  Q
    ||||||||||| |||||||||| | || | ||| | ||||||||||||||| |||||| || || ||||||| | ||||||| || |||||||| |||||    
T  30342658 gagcgagtagggatatttttatttttaactacctctaataatatatatttagctaccccaaattttattttaagtgaaataa-ttctttccatctttatt 30342756  T
Q  398 tagcttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaaca 457  Q
    |||||| |||||||||||||||| |||||||| ||||||||||||| ||||||| |||||    
T  30342757 tagctttcggtcgaacttcaaattatttaatcatgtcgtataggaatcggaagaataaca 30342816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 298 - 455
Target Start/End: Complemental strand, 17653408 - 17653252
Alignment:
Q  298 gagcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatt 397  Q
    |||||||| ||||||||||||||| || | ||||| ||||||||||||||| |||||| |||||  |||||| | ||||||| ||||||| ||| |||||    
T  17653408 gagcgagtgggtatatttttatatttaactacccctaataatatatatttagctaccccaagtttaattttaagtgaaataa-ttttttctatctttatt 17653310  T
Q  398 tagcttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaa 455  Q
    || ||| |||||||||||||||| |||| ||  |||||||||||||||| ||||||||    
T  17653309 taactttcggtcgaacttcaaattatttgataatgtcgtataggaaccgaaagattaa 17653252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 301 - 457
Target Start/End: Original strand, 40285633 - 40285788
Alignment:
Q  301 cgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatttag 400  Q
    ||||||| |||||||| |||| |||| | ||| ||||||||||||||| ||| |  |||||  |||||| | ||||||  ||||||| ||| ||||||||    
T  40285633 cgagtagatatatttt-atatttagctatccctaataatatatatttagctatctcaagtttgattttaagtgaaatattttttttcaatcattatttag 40285731  T
Q  401 cttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaaca 457  Q
    ||| |||||||||||||||| |||||||| |||| ||||||||||||||||||||||    
T  40285732 ctttcggtcgaacttcaaattatttaatcatgtcatataggaaccggaagattaaca 40285788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 298 - 457
Target Start/End: Original strand, 46823529 - 46823687
Alignment:
Q  298 gagcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatt 397  Q
    |||||||||||||||||||||||| |||| ||||| ||||||||||| ||| |||||| |||||  ||||||   ||||||| ||||||| ||| |||||    
T  46823529 gagcgagtaggtatatttttatatttagctacccctaataatatataattagctaccccaagtttaattttagatgaaataa-ttttttctatctttatt 46823627  T
Q  398 tagcttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaaca 457  Q
    || |||||||||||||||||||| |||| ||  ||| ||||| ||| || ||||||||||    
T  46823628 taacttccggtcgaacttcaaattatttgataatgttgtataagaatcgaaagattaaca 46823687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 302 - 457
Target Start/End: Complemental strand, 35734494 - 35734341
Alignment:
Q  302 gagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatttagc 401  Q
    |||||||||||||||||||| |||  ||||  |||||||| |||||| ||||||||| || ||||||| | ||||||| |||||| ||||  ||||||||    
T  35734494 gagtaggtatatttttatatttagttacccttaataatatgtatttagctaccctaaattttattttaagtgaaataattttttttcatctatatttagc 35734395  T
Q  402 ttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaaca 457  Q
    |||||  ||||||| |||| ||||||  || || ||||||||||||||||||||||    
T  35734394 ttccg--cgaacttgaaattatttaacattatcatataggaaccggaagattaaca 35734341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 375 - 428
Target Start/End: Complemental strand, 35734320 - 35734267
Alignment:
Q  375 aataacttttttccatccttatttagcttccggtcgaacttcaaatgatttaat 428  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||| |||||||    
T  35734320 aataatttttttccatctttatttagcttccggtcgaacttcaaattatttaat 35734267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 303 - 385
Target Start/End: Original strand, 37057524 - 37057606
Alignment:
Q  303 agtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttt 385  Q
    ||||||||||||||||| | |||| ||||| ||||||||||||||  |||||| |||||| |||||| | | |||||||||||    
T  37057524 agtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagttcgattttaggtgcaataacttttt 37057606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 304 - 369
Target Start/End: Complemental strand, 22775340 - 22775275
Alignment:
Q  304 gtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctatttta 369  Q
    |||||||||||||||| | |||| ||||| ||||||||||||||  |||||| |||||| ||||||    
T  22775340 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagttcgatttta 22775275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 304 - 369
Target Start/End: Complemental strand, 26769901 - 26769836
Alignment:
Q  304 gtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctatttta 369  Q
    |||||||||||||||| | |||| ||||| ||||||||||||||  |||||| |||||| ||||||    
T  26769901 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagttcgatttta 26769836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 4254703 - 4254647
Alignment:
Q  126 gaactcgggttctcctaaacgattccttctttggtgaagctcattaaccatttgagt 182  Q
    ||||||||||| ||| |||| |||| |||||||||| |||||||||||||| |||||    
T  4254703 gaactcgggttatcccaaactattcgttctttggtgcagctcattaaccatgtgagt 4254647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 369
Target Start/End: Original strand, 37224390 - 37224456
Alignment:
Q  303 agtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctatttta 369  Q
    ||||||||||||||||| | |||| ||||| ||||||||||||||  ||| || |||||| ||||||    
T  37224390 agtaggtatatttttatgtttagctacccctaataatatatatttggctatcccaagttcgatttta 37224456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 457
Target Start/End: Original strand, 21295751 - 21295815
Alignment:
Q  393 ttatttagcttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaaca 457  Q
    ||||||| |||||||||||||||||||| |||| ||  ||| ||||| ||| || ||||||||||    
T  21295751 ttatttaacttccggtcgaacttcaaattatttgataatgttgtataagaatcgaaagattaaca 21295815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 35734562 - 35734518
Alignment:
Q  237 gcaggggcggatgctagtataaggtaggggtagccattgctaccc 281  Q
    ||||||||||||| |||||||||| |||||||||  |||||||||    
T  35734562 gcaggggcggatggtagtataagggaggggtagctcttgctaccc 35734518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 299 - 460
Target Start/End: Complemental strand, 21442013 - 21441853
Alignment:
Q  299 agcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttattt 398  Q
    ||||||||||||||||||||||| |||| ||||| ||||||||||||||| |||||| |||||  ||||||   ||||||| ||||||| ||| ||||||    
T  21442013 agcgagtaggtatatttttatatttagctacccctaataatatatatttagctaccccaagtttaattttagatgaaataa-ttttttctatctttattt 21441915  T
Q  399 agcttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaacatcc 460  Q
    | |||||||||||||||||||| |||| ||  ||| ||||| ||| || |||||||||||||    
T  21441914 aacttccggtcgaacttcaaattatttgataatgttgtataagaatcgaaagattaacatcc 21441853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 298 - 437
Target Start/End: Original strand, 18606013 - 18606151
Alignment:
Q  298 gagcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatt 397  Q
    |||||||||||||||||||||||| |||| ||||| ||||||||||||||  |||||| ||||| ||||||| | ||||||| ||||||||||| |||||    
T  18606013 gagcgagtaggtatatttttatatttagctacccctaataatatatatttggctaccccaagttttattttaagtgaaataa-ttttttccatctttatt 18606111  T
Q  398 tagcttccggtcgaacttcaaatgatttaatcttgtcgta 437  Q
    || ||||||||| ||||| |||| ||| |||| |||||||    
T  18606112 taacttccggtcaaactttaaattattcaatcatgtcgta 18606151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 298 - 457
Target Start/End: Complemental strand, 41323602 - 41323444
Alignment:
Q  298 gagcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatt 397  Q
    |||||||||||||||||||||||| |||| ||||| ||||||||||| ||| |||||| |||||  ||||||   ||||||| ||||||| ||| |||||    
T  41323602 gagcgagtaggtatatttttatatttagctacccctaataatatataattagctaccccaagtttaattttagatgaaataa-ttttttctatctttatt 41323504  T
Q  398 tagcttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaaca 457  Q
    ||  ||||||||||||||||||| |||| ||  ||| ||||| ||| || ||||||||||    
T  41323503 taatttccggtcgaacttcaaattatttgataatgttgtataagaatcgaaagattaaca 41323444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 298 - 457
Target Start/End: Complemental strand, 4072648 - 4072490
Alignment:
Q  298 gagcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatt 397  Q
    |||||||||||||||||||||||| |||| ||||| ||||||||||| ||| |||||| |||||  ||||||   ||||||| ||||||| ||| |||||    
T  4072648 gagcgagtaggtatatttttatatttagctacccctaataatatataattagctaccccaagtttaattttagatgaaataa-ttttttctatctttatt 4072550  T
Q  398 tagcttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaaca 457  Q
    || ||| |||| ||||||||||| |||| ||  ||| ||||| ||| || ||||||||||    
T  4072549 taacttacggtagaacttcaaattatttgataatgttgtataagaatcgaaagattaaca 4072490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 1948995 - 1949054
Alignment:
Q  121 aaatcgaactcgggttctcctaaacgattccttctttggtgaagctcattaaccatttga 180  Q
    ||||||||||  |||||| |||||| |||| | ||||| |||||||||||||||||||||    
T  1948995 aaatcgaactgaggttcttctaaacaattcgtcctttgttgaagctcattaaccatttga 1949054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 41323666 - 41323622
Alignment:
Q  237 gcaggggcggatgctagtataaggtaggggtagccattgctaccc 281  Q
    ||||||||||||| ||||| |||| |||||||||| |||||||||    
T  41323666 gcaggggcggatggtagtacaagggaggggtagcccttgctaccc 41323622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 298 - 457
Target Start/End: Original strand, 14997 - 15155
Alignment:
Q  298 gagcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatt 397  Q
    |||||||||||||||||||||||  |||| ||||| ||||||||||||||| |||||| || ||  |||||| | ||||||| ||||||| ||| |||||    
T  14997 gagcgagtaggtatatttttataattagctacccctaataatatatatttagctaccccaaatttaattttaagtgaaataa-ttttttctatctttatt 15095  T
Q  398 tagcttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaaca 457  Q
    || |||||||||||||||  ||| |||| ||  |||||||||||||||| ||||||||||    
T  15096 taacttccggtcgaacttttaattatttgataatgtcgtataggaaccgaaagattaaca 15155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 302 - 457
Target Start/End: Original strand, 46873 - 47027
Alignment:
Q  302 gagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatttagc 401  Q
    |||||||||||||||||||| |||| ||||| ||||||||||||||  |||||| ||||| |||||||   ||||||| ||||||||||| ||||||| |    
T  46873 gagtaggtatatttttatatttagctacccctaataatatatatttggctaccccaagttttattttaaatgaaataa-ttttttccatctttatttaac 46971  T
Q  402 ttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaaca 457  Q
    |||||||| ||||| |||| ||| |||| ||||||| |||| ||| |||| |||||    
T  46972 ttccggtcaaactttaaattattcaatcatgtcgtacaggatccgaaagaataaca 47027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 299 - 457
Target Start/End: Complemental strand, 17769396 - 17769239
Alignment:
Q  299 agcgagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttattt 398  Q
    ||||||||||||||||||||||| |||| ||||| ||||||||||||||| |||||| |||||  ||||||   ||||||| ||||||| ||| ||||||    
T  17769396 agcgagtaggtatatttttatatttagctacccctaataatatatatttagctaccccaagtttaattttagatgaaataa-ttttttctatctttattt 17769298  T
Q  399 agcttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaaca 457  Q
    | |||||||||||||||||||| |||| ||  ||| ||||| ||| || ||||||||||    
T  17769297 aacttccggtcgaacttcaaattatttgataatgttgtataagaatcgaaagattaaca 17769239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 298 - 457
Target Start/End: Complemental strand, 39685750 - 39685592
Alignment:
Q  298 gagcgagtaggtatatttttatatctagcca-ccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttat 396  Q
    |||||||||||||||||||||||| |||| | || | ||||||||||||||| |||||| |||||  |||||| | ||||||| ||||||| ||  ||||    
T  39685750 gagcgagtaggtatatttttatatttagctatcctctaataatatatatttagctaccccaagtttaattttaagtgaaataa-ttttttctatttttat 39685652  T
Q  397 ttagcttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaaca 457  Q
    ||| |||||| ||||||||||||| |||| ||  |||||||||||||||| ||||||||||    
T  39685651 ttaacttccgatcgaacttcaaat-atttgataatgtcgtataggaaccgaaagattaaca 39685592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 302 - 457
Target Start/End: Original strand, 8403304 - 8403458
Alignment:
Q  302 gagtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatttagc 401  Q
    |||||||||||| ||| ||| |||| ||| | ||||||||  ||||| ||||| ||| || ||||||| | | |||||  |||||||||||||||||||     
T  8403304 gagtaggtatatatttttatttagctacctctaataatatgcatttagctaccttaaattttattttaagtggaataatctttttccatccttatttagt 8403403  T
Q  402 ttccggtcgaacttcaaatgatttaatcttgtcgtataggaaccggaagattaaca 457  Q
    || | || ||||||||||| |||| | | ||||||||||| |||||| ||||||||    
T  8403404 tttcagttgaacttcaaattatttgaacgtgtcgtatagg-accggaggattaaca 8403458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 425
Target Start/End: Original strand, 13517244 - 13517363
Alignment:
Q  304 gtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctattttatgggaaataacttttttccatccttatttagctt 403  Q
    |||||||||||||||||| |||| ||||  |||||||||||||||||||||| |||||  ||||||   ||||||| ||||||  ||| ||||||| |||    
T  13517244 gtaggtatatttttatatttagctaccct-aataatatatatttaactaccccaagtttaattttagatgaaataa-ttttttttatctttatttaactt 13517341  T
Q  404 ccggtcgaacttcaaatgattt 425  Q
     |||||||| ||||||| ||||    
T  13517342 tcggtcgaaattcaaattattt 13517363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 369
Target Start/End: Original strand, 6735911 - 6735977
Alignment:
Q  303 agtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctatttta 369  Q
    ||||||||||||||||||| |||| ||| | ||||||||||||||  |||||| |||||| ||||||    
T  6735911 agtaggtatatttttatatttagctacctctaataatatatatttggctaccccaagttcgatttta 6735977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 369
Target Start/End: Original strand, 39570831 - 39570897
Alignment:
Q  303 agtaggtatatttttatatctagccaccccgaataatatatatttaactaccctaagttctatttta 369  Q
    ||||||||||||||||| | |||| ||||| ||||||||||||||  |||||| |||||| ||||||    
T  39570831 agtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagttcgatttta 39570897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 114 - 175
Target Start/End: Complemental strand, 30737416 - 30737355
Alignment:
Q  114 cacctaaaaatcgaactcgggttctcctaaacgattccttctttggtgaagctcattaacca 175  Q
    ||||||| |||  |||||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  30737416 cacctaagaattaaactcgggttctccgaaatgattcgttctttggtgaagttcattaacca 30737355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 30702288 - 30702240
Alignment:
Q  127 aactcgggttctcctaaacgattccttctttggtgaagctcattaacca 175  Q
    ||||||||||||||  |||||||| ||||||||||||| ||||||||||    
T  30702288 aactcgggttctccggaacgattcgttctttggtgaagttcattaacca 30702240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 17769461 - 17769417
Alignment:
Q  237 gcaggggcggatgctagtataaggtaggggtagccattgctaccc 281  Q
    ||||||||||||| ||||| |||| |||||||||| |||||||||    
T  17769461 gcaggggcggatggtagtacaagggaggggtagcccttgctaccc 17769417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University