View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14295_high_8 (Length: 518)

Name: NF14295_high_8
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14295_high_8
NF14295_high_8
[»] chr4 (30 HSPs)
chr4 (11-503)||(6625935-6626426)
chr4 (329-492)||(6522057-6522220)
chr4 (326-492)||(6812310-6812476)
chr4 (328-492)||(6501757-6501921)
chr4 (361-492)||(6647552-6647683)
chr4 (327-467)||(6540908-6541048)
chr4 (328-492)||(6832819-6832983)
chr4 (316-478)||(6665976-6666138)
chr4 (327-492)||(6792864-6793029)
chr4 (327-452)||(6592670-6592795)
chr4 (19-96)||(6749795-6749872)
chr4 (327-492)||(6769956-6770127)
chr4 (13-96)||(6592306-6592389)
chr4 (17-96)||(6833242-6833321)
chr4 (13-95)||(6716353-6716435)
chr4 (13-96)||(6667079-6667162)
chr4 (11-94)||(6647997-6648080)
chr4 (13-88)||(6793299-6793374)
chr4 (19-94)||(7889769-7889844)
chr4 (19-96)||(6549475-6549552)
chr4 (350-490)||(6549882-6550022)
chr4 (332-492)||(6749333-6749493)
chr4 (13-85)||(10034719-10034791)
chr4 (19-86)||(6712601-6712668)
chr4 (13-84)||(21227092-21227163)
chr4 (13-94)||(6770365-6770449)
chr4 (25-94)||(6812672-6812741)
chr4 (21-96)||(6537152-6537227)
chr4 (19-94)||(6501437-6501512)
chr4 (17-78)||(4332491-4332552)
[»] scaffold0729 (1 HSPs)
scaffold0729 (327-492)||(5600-5765)
[»] chr7 (4 HSPs)
chr7 (15-74)||(34719959-34720018)
chr7 (15-79)||(18925416-18925480)
chr7 (15-77)||(34729860-34729922)
chr7 (15-77)||(34734424-34734486)
[»] scaffold0552 (1 HSPs)
scaffold0552 (25-94)||(144-213)


Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 11 - 503
Target Start/End: Original strand, 6625935 - 6626426
Alignment:
Q  11 atgaatagagatgtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaacatcnnnnnnnnnnnnnn 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  
T  6625935 atgaatagagatgtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaacatcaaagaaaagaaaaa 6626034  T
Q  111 nnnnncatagcttagatatattgttcctgaaattcttgaggccactgatgcatcattaactatgacacagtttgttttgttattaattttcgattttcaa 210  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6626035 aaaa-catagcttagatatattgttcctgaaattcttgaggccactgatgcatcattaactatgacacagtttgttttgttattaattttcgattttcaa 6626133  T
Q  211 tgcacagtcatactaattaactattggtgttggtgggatgattatgaatccaaatgttaacaaactgannnnnnnaatcttcacctttgtggtgatcata 310  Q
    | |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  6626134 ttcacagtcatactaattaactattggtgttgttggaatgattatgaatccaaatgttaacaaactgatttttataatcttcacctttgtggtgatcata 6626233  T
Q  311 tatattatatacactgccactcacctgatcagtcttattacttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagc 410  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6626234 tatattacatacactgccactcacctgatcagtcttattacttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagc 6626333  T
Q  411 ttgttattctcaccaatggttaaaaggctcttgtcttcaaggagacttatttgaagactggtgcattgtgttgacctatttattgtacagagt 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6626334 ttgttattctcaccaatggttaaaaggctcttgtcttcaaggagacttatttgaagactggtgcattgtgttgacctatttattgtacggagt 6626426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 329 - 492
Target Start/End: Original strand, 6522057 - 6522220
Alignment:
Q  329 actcacctgatcagtcttattacttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgttattctcaccaatg 428  Q
    ||||||||||| |||||||||||||||||| ||| |||||||||| |||||||| |||||||| ||| ||||||||| |||| ||||||||||| |||||    
T  6522057 actcacctgattagtcttattacttgattccctcgtaatgatatctcttgccatggcttgtagaagaacatgcatttgaagcctgttattctcatcaatg 6522156  T
Q  429 gttaaaaggctcttgtcttcaaggagacttatttgaagactggtgcattgtgttgacctattta 492  Q
    |||| |||||||||||||||||||||| ||||||||||| | ||| ||||||||||| ||||||    
T  6522157 gttacaaggctcttgtcttcaaggagatttatttgaagagttgtggattgtgttgacatattta 6522220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 326 - 492
Target Start/End: Complemental strand, 6812476 - 6812310
Alignment:
Q  326 gccactcacctgatcagtcttattacttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgttattctcacca 425  Q
    |||||||||||||| || | ||||||||||||| |||||||||||||| |||||||| |||||||||||| |||| ||||||||||||||||||| | ||    
T  6812476 gccactcacctgattagacatattacttgattccctcttaatgatatctcttgccatggcttgtagcagaacatgtatttcaagcttgttattcttatca 6812377  T
Q  426 atggttaaaaggctcttgtcttcaaggagacttatttgaagactggtgcattgtgttgacctattta 492  Q
    |||| || |||||||||||||||||||||||||||||||| ||| | ||||||| ||  ||||||||    
T  6812376 atggctacaaggctcttgtcttcaaggagacttatttgaaaacttgcgcattgtatttgcctattta 6812310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 328 - 492
Target Start/End: Original strand, 6501757 - 6501921
Alignment:
Q  328 cactcacctgatcagtcttattacttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgttattctcaccaat 427  Q
    ||||||||||||  |||||||||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||| |||||||||||||||| ||||    
T  6501757 cactcacctgattggtcttattacttgattctctgttaatgatatctcttgccatggcttgtagcagaacatgcatttgaagcttgttattctcatcaat 6501856  T
Q  428 ggttaaaaggctcttgtcttcaaggagacttatttgaagactggtgcattgtgttgacctattta 492  Q
    ||||| || ||| ||||||||||||  | ||||||||||| | | || |||| ||||||||||||    
T  6501857 ggttacaaagcttttgtcttcaaggcaatttatttgaagagttgcgcgttgtattgacctattta 6501921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 361 - 492
Target Start/End: Complemental strand, 6647683 - 6647552
Alignment:
Q  361 tcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgttattctcaccaatggttaaaaggctcttgtcttcaaggagacttat 460  Q
    ||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  6647683 tcttaatgatatctcttgccatggcttgtagaagaccatgcatttcaagcttgttattctcatcaatggttacaaggctcttgtcttcaaggagacttat 6647584  T
Q  461 ttgaagactggtgcattgtgttgacctattta 492  Q
    | |||||   | ||| ||||||||||||||||    
T  6647583 tagaagagctgagcactgtgttgacctattta 6647552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 327 - 467
Target Start/End: Original strand, 6540908 - 6541048
Alignment:
Q  327 ccactcacctgatcagtcttattacttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgttattctcaccaa 426  Q
    |||||||||||||| ||||| | |||||||||||||||||| ||| | |||||||| |||||||||| | ||||||||| || |||||||| |||| |||    
T  6540908 ccactcacctgatcggtcttttgacttgattctctcttaattatacctcttgccatggcttgtagcataacatgcatttgaatcttgttatcctcatcaa 6541007  T
Q  427 tggttaaaaggctcttgtcttcaaggagacttatttgaaga 467  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  6541008 tggttataaggctcttgtcttcaaggagacttatttgaaga 6541048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 328 - 492
Target Start/End: Complemental strand, 6832983 - 6832819
Alignment:
Q  328 cactcacctgatcagtcttattacttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgttattctcaccaat 427  Q
    ||||||||||||| ||||||||||||||||  ||| |||||| ||| |||||||| | |||||||| | ||||||||| ||| |||||||||||| | ||    
T  6832983 cactcacctgatcggtcttattacttgatttcctcctaatgacatctcttgccatggattgtagcaaaacatgcatttgaagattgttattctcatcgat 6832884  T
Q  428 ggttaaaaggctcttgtcttcaaggagacttatttgaagactggtgcattgtgttgacctattta 492  Q
    ||||| || ||||||||||| |||||||||||||||||||   ||||||||||||||||||||||    
T  6832883 ggttacaaagctcttgtcttgaaggagacttatttgaagatctgtgcattgtgttgacctattta 6832819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 316 - 478
Target Start/End: Complemental strand, 6666138 - 6665976
Alignment:
Q  316 tatatacactgccactcacctgatcagtcttattacttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgtt 415  Q
    |||||| ||| ||||||| |||||||||||| ||||||||||  ||  ||| |||||| |||||||| |||||| ||| | ||||||||| |||||||||    
T  6666138 tatatatactaccactcatctgatcagtcttcttacttgattgccttgtaacgatatctcttgccatggcttgttgcataacatgcatttgaagcttgtt 6666039  T
Q  416 attctcaccaatggttaaaaggctcttgtcttcaaggagacttatttgaagactggtgcattg 478  Q
    ||||||| ||||||||| || ||||||||||||||||||||||||||||||| | ||||||||    
T  6666038 attctcatcaatggttacaaagctcttgtcttcaaggagacttatttgaagagttgtgcattg 6665976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 327 - 492
Target Start/End: Complemental strand, 6793029 - 6792864
Alignment:
Q  327 ccactcacctgatcagtcttattacttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgttattctcaccaa 426  Q
    |||||||||| ||| |||||||| ||||||||  |||||||||| || |||||||| |||||||||||| |||||||| ||||||||||||||||| |||    
T  6793029 ccactcaccttatctgtcttatttcttgattccttcttaatgatgtctcttgccatggcttgtagcagaacatgcattccaagcttgttattctcatcaa 6792930  T
Q  427 tggttaaaaggctcttgtcttcaaggagacttatttgaagactggtgc--attgtgttgacctattta 492  Q
    |||||| || |||||||||||||||  | |||||||||||  || |||  ||||||||||||||||||    
T  6792929 tggttagaaagctcttgtcttcaagacgccttatttgaag--tgctgcagattgtgttgacctattta 6792864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 327 - 452
Target Start/End: Original strand, 6592670 - 6592795
Alignment:
Q  327 ccactcacctgatcagtcttattacttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgttattctcaccaa 426  Q
    ||||||||||||||||| ||||| ||||||| ||| ||||||||||| || ||||| |||||||||||| |||| ||| ||||||||||||||||  |||    
T  6592670 ccactcacctgatcagtgttattgcttgattttcttttaatgatatctctcgccatggcttgtagcagaacatgaattccaagcttgttattctcgtcaa 6592769  T
Q  427 tggttaaaaggctcttgtcttcaagg 452  Q
    |||||| || ||||||||||||||||    
T  6592770 tggttagaaagctcttgtcttcaagg 6592795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 6749872 - 6749795
Alignment:
Q  19 agatgtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaacatc 96  Q
    |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||    
T  6749872 agatgtgaaatgaattttgcacgactgtcgtctcctctgaaactcaagaacacatcgtacatctttggctgaaacatc 6749795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 327 - 492
Target Start/End: Complemental strand, 6770127 - 6769956
Alignment:
Q  327 ccactcacctgatcagtcttattacttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgttattctcaccaa 426  Q
    |||||||||||||||| |  |||||||||||  |||||| |||||| ||||||||| |||||||||| | ||| |||||||| ||||||||||||| |||    
T  6770127 ccactcacctgatcaggcaaattacttgattgcctcttagtgatataccttgccatggcttgtagcaaaacattcatttcaatcttgttattctcatcaa 6770028  T
Q  427 tggttaaaaggc------tcttgtcttcaaggagacttatttgaagactggtgcattgtgttgacctattta 492  Q
    |||||| |||||      ||||||||||||| |||| ||||||||||   | | ||||||||||| ||||||    
T  6770027 tggttacaaggctctagatcttgtcttcaagcagacatatttgaagagctgcgtattgtgttgacttattta 6769956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 6592306 - 6592389
Alignment:
Q  13 gaatagagatgtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaacatc 96  Q
    |||||||||||||| ||||||||||| ||| ||||||| ||||||||||||||||||||||| ||||||||||||| |||||||    
T  6592306 gaatagagatgtgacatgaactttgcccgattgtcttctcctctgaaactcaagaacacatcatacatctttggctgaaacatc 6592389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 6833321 - 6833242
Alignment:
Q  17 agagatgtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaacatc 96  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||| |||||||    
T  6833321 agagatgtgacatgaactttgcacgactatcttcccctctgaaactcaagaatacatcgtacacctttggctgaaacatc 6833242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 6716435 - 6716353
Alignment:
Q  13 gaatagagatgtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaacat 95  Q
    |||| ||||||||| |||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6716435 gaatggagatgtgatatgaaccttggacgattgtcttcccctctgaaactcaagaacacatcgtacatctttggctgaaacat 6716353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 6667162 - 6667079
Alignment:
Q  13 gaatagagatgtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaacatc 96  Q
    |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| | || |||||||    
T  6667162 gaatagaggtgtgacatgaactttgcacgactttcttcccctctgaaactcaagaacacattgtacatcttcgactgaaacatc 6667079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 6648080 - 6647997
Alignment:
Q  11 atgaatagagatgtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaaca 94  Q
    ||||| ||| |||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||| ||| |||| |||||    
T  6648080 atgaaaagatatgtgacatgaactttgcacggctgtcttcccctctaaaactcaagaacacatcgtacagcttcggctgaaaca 6647997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 6793374 - 6793299
Alignment:
Q  13 gaatagagatgtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggct 88  Q
    |||||||||||||| |  |||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  6793374 gaatagagatgtgacacaaactttgcccgattgtcttcccctctgaaactcaagaacacatcatacatctttggct 6793299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 7889769 - 7889844
Alignment:
Q  19 agatgtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaaca 94  Q
    |||||||||||||| ||||| |||| ||||||||||||||||||||||||||| ||||||||||||| || |||||    
T  7889769 agatgtgaaatgaattttgctcgacagtcttcccctctgaaactcaagaacacgtcgtacatctttgtctgaaaca 7889844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 6549475 - 6549552
Alignment:
Q  19 agatgtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaacatc 96  Q
    |||||||||||||| || |||||||| |||||||||| |||||||||||| || |||||||||||||||| |||||||    
T  6549475 agatgtgaaatgaatttcgcacgactatcttcccctcggaaactcaagaagacgtcgtacatctttggctgaaacatc 6549552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 350 - 490
Target Start/End: Original strand, 6549882 - 6550022
Alignment:
Q  350 acttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgttattctcaccaatggttaaaaggctcttgtcttca 449  Q
    ||||| ||| |||||||| |||||  ||||||| ||||||||||   | ||||||||||| ||||| |||| | |||| ||||||| ||||||||||||     
T  6549882 acttgtttcactcttaataatatcttttgccatggcttgtagcacgacttgcatttcaaggttgtttttcttatcaatagttaaaaagctcttgtcttcg 6549981  T
Q  450 aggagacttatttgaagactggtgcattgtgttgacctatt 490  Q
    |||||| |||||||||||   |  |||||||||||||||||    
T  6549982 aggagatttatttgaagagctgcacattgtgttgacctatt 6550022  T

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Target: chr4; HSP #22
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 332 - 492
Target Start/End: Complemental strand, 6749493 - 6749333
Alignment:
Q  332 cacctgatcagtcttattacttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgttattctcaccaatggtt 431  Q
    |||||||||||  ||||||  ||||||  ||||||||||||| |||||||| |||||||| |   ||  ||||| ||  ||||| || ||| | || |||    
T  6749493 cacctgatcagaattattatgtgattccatcttaatgatatctcttgccatggcttgtagaactacagacatttgaattttgtttttgtcatctattgtt 6749394  T
Q  432 aaaaggctcttgtcttcaaggagacttatttgaagactggtgcattgtgttgacctattta 492  Q
    | || ||||||||||||||||||||||||||||||| | ||| |||||||||| |||||||    
T  6749393 acaaagctcttgtcttcaaggagacttatttgaagagttgtgtattgtgttgagctattta 6749333  T

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Target: chr4; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 10034791 - 10034719
Alignment:
Q  13 gaatagagatgtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttg 85  Q
    |||||||||||||||||||| || || ||| |||||||||||||||||||||||||||| || | ||||||||    
T  10034791 gaatagagatgtgaaatgaatttcgcgcgaatgtcttcccctctgaaactcaagaacacgtcatgcatctttg 10034719  T

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Target: chr4; HSP #24
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 6712668 - 6712601
Alignment:
Q  19 agatgtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttgg 86  Q
    |||||||||| ||| ||||||| || ||| ||||||||||||||||||||||||||||||| ||||||    
T  6712668 agatgtgaaacgaattttgcactaccgtcgtcccctctgaaactcaagaacacatcgtacacctttgg 6712601  T

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Target: chr4; HSP #25
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 21227163 - 21227092
Alignment:
Q  13 gaatagagatgtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatcttt 84  Q
    |||| ||||||||||||||| ||  || |||| ||||||||||||||||||||||||||||||| |||||||    
T  21227163 gaattgagatgtgaaatgaatttcacatgactttcttcccctctgaaactcaagaacacatcgtgcatcttt 21227092  T

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Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 6770449 - 6770365
Alignment:
Q  13 gaatagagatgtgaaatgaactttgcacgactgtcttcccctctgaaactcaaga---acacatcgtacatctttggctaaaaca 94  Q
    ||||||||||||||||||||||| | |||| ||||| ||||||| ||||||||||   |||||||||| |||||||||| |||||    
T  6770449 gaatagagatgtgaaatgaacttcgaacgattgtctacccctctaaaactcaagaagtacacatcgtatatctttggctgaaaca 6770365  T

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Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 6812741 - 6812672
Alignment:
Q  25 gaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaaca 94  Q
    |||||||| || ||||||||||| |||||||| |||||||||| ||||||||||||||| |||| |||||    
T  6812741 gaaatgaatttcgcacgactgtcatcccctctaaaactcaagatcacatcgtacatcttcggctgaaaca 6812672  T

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Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 6537152 - 6537227
Alignment:
Q  21 atgtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaacatc 96  Q
    |||||||| ||| ||  |||||||||| |||||||| |||||||| |||||||| ||||||||||||| |||||||    
T  6537152 atgtgaaacgaatttcacacgactgtcgtcccctctaaaactcaaaaacacatcatacatctttggctgaaacatc 6537227  T

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Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 6501437 - 6501512
Alignment:
Q  19 agatgtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaaca 94  Q
    |||||||| |||||||||| || ||  ||||  || ||||||||||||||||| |||||||||||||||| |||||    
T  6501437 agatgtgatatgaactttgtacaacaatcttttccgctgaaactcaagaacacgtcgtacatctttggctgaaaca 6501512  T

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Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 4332552 - 4332491
Alignment:
Q  17 agagatgtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtac 78  Q
    ||||||||||| ||||   ||| ||| ||||||| ||||| |||||||||||||||||||||    
T  4332552 agagatgtgaagtgaatgatgcgcgagtgtcttcgcctctaaaactcaagaacacatcgtac 4332491  T

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Target: scaffold0729 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 327 - 492
Target Start/End: Original strand, 5600 - 5765
Alignment:
Q  327 ccactcacctgatcagtcttattacttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgttattctcaccaa 426  Q
    |||||||||| ||| |||||||| ||||||||  |||||||||| || |||||||| |||||||||||| |||||||| ||||||||||||||||| |||    
T  5600 ccactcaccttatctgtcttatttcttgattccttcttaatgatgtctcttgccatggcttgtagcagaacatgcattccaagcttgttattctcatcaa 5699  T
Q  427 tggttaaaaggctcttgtcttcaaggagacttatttgaagactggtgc--attgtgttgacctattta 492  Q
    |||||| || |||||||||||||||  | |||||||||||  || |||  ||||||||||||||||||    
T  5700 tggttagaaagctcttgtcttcaagacgccttatttgaag--tgctgcagattgtgttgacctattta 5765  T

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Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 34719959 - 34720018
Alignment:
Q  15 atagagatgtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatc 74  Q
    ||||||||||||||||||  |||||||| | |||||||||||||||||||||||||||||    
T  34719959 atagagatgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatc 34720018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 18925480 - 18925416
Alignment:
Q  15 atagagatgtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtaca 79  Q
    |||||||||||||||||| ||||||||||  |||  ||||||||||||||||||||| |||||||    
T  18925480 atagagatgtgaaatgaattttgcacgacaatctatccctctgaaactcaagaacacgtcgtaca 18925416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 34729860 - 34729922
Alignment:
Q  15 atagagatgtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgta 77  Q
    |||||||||||||||||| ||||||||| |||| | ||||| |||||||||||| ||||||||    
T  34729860 atagagatgtgaaatgaattttgcacgagtgtcgttccctcggaaactcaagaagacatcgta 34729922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 34734424 - 34734486
Alignment:
Q  15 atagagatgtgaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgta 77  Q
    |||||||||||||||||| |||||| || |||| || || | |||||||||||| ||||||||    
T  34734424 atagagatgtgaaatgaattttgcatgagtgtcgtcgccccggaaactcaagaagacatcgta 34734486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 213 - 144
Alignment:
Q  25 gaaatgaactttgcacgactgtcttcccctctgaaactcaagaacacatcgtacatctttggctaaaaca 94  Q
    |||||||| || ||||||||||| |||||||| |||||||||| ||||||||||||||| |||| |||||    
T  213 gaaatgaatttcgcacgactgtcatcccctctaaaactcaagatcacatcgtacatcttcggctgaaaca 144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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