View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14295_high_9 (Length: 506)
Name: NF14295_high_9
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14295_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Original strand, 42354784 - 42355235
Alignment:
| Q |
18 |
tttgattgaagttgttgtgttcttttcacaattgttatggacattcggttatgttttgttcatattctgttatgtttggattttttgcatcagaaaagta |
117 |
Q |
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| T |
42354784 |
tttgcttgaagttgttgtgttcttttcacaattgttatggacattcggttatgttttgttcatattctgttatgtttggattttttgcatcagaaaagta |
42354883 |
T |
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| Q |
118 |
aaaatgaagagtattggttccgagtcaattatcgattatatcaagtcacttataacgtgtagagcattatttaaggtatttttaagtcatatagtttaat |
217 |
Q |
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| T |
42354884 |
aaaatgaagagtattagttccgagt---------------------cacttataacgtgtagagcattatttaaggtatttttaagtcatatagtttaat |
42354962 |
T |
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| Q |
218 |
cttgacgatcaactttgtttttattacaacttaaatgttttgtacacaaaatgatttgcatatttgatttataaaccttagttaaaccctcaactcaaag |
317 |
Q |
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| T |
42354963 |
cttgacgatcaactttgtttttattacaacttaaatgttttgtacacaaaatgatttgcatatttgatttataaaccttagttaaaccctcaactcaaag |
42355062 |
T |
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| Q |
318 |
tgtagagagagatgtttgggagaggagctgttggatcatttttaaagcgcagcaaagaagcattttttattcagaagctcgtagggaggaacacgactat |
417 |
Q |
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| T |
42355063 |
tgtagagagagatgtttgggagaggagctgttggatcatttttaaagcgcagcaaagaagcattttttattcagaagctcgtagggaggaacacggcaac |
42355162 |
T |
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| Q |
418 |
gattcctttctctcatcctgccatcgaacaacaatcgttcaagttttttaacccttccgttgtttccacccat |
490 |
Q |
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| T |
42355163 |
ggttcctttctctcatcctgccatcgaacaacaatcgttcaagttttttaacccttccgttgtttccacccat |
42355235 |
T |
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