View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14295_low_1 (Length: 1009)
Name: NF14295_low_1
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14295_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 660; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 217 - 966
Target Start/End: Complemental strand, 5863851 - 5863109
Alignment:
| Q |
217 |
cattcacatatttgatatttcatatcatgatattgaatataacaagaggagacaatatttcatgatcagaaaaaccaaaatctggctcaaggaaacaagc |
316 |
Q |
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| T |
5863851 |
cattcacatatttgatatttcatatcatgatat-gaatataacaagaggagacaatatttcatgatcagaaacaccaaaatctggctcaaggaaacaagc |
5863753 |
T |
|
| Q |
317 |
aatatatgacaataatatgttatgatcaatattaggacaatacgaccaggctaaggcccctccatgaccatgatgtggtcctcaaaagaaaactagaagg |
416 |
Q |
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| T |
5863752 |
aatatatgacaataatatgttatgatcaatattaggacaatacgaccaggctaaggcccctccatga------tgtggtcctcaaaagaatactagaagg |
5863659 |
T |
|
| Q |
417 |
gtattgtggtcctcatcaacatcaacaaaatatcaaaacattggccacaataggcattaacatgagttttaaggccacaccagtaacaccacgtagcccc |
516 |
Q |
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| T |
5863658 |
gtattgtggtcctcatcaacatcaataaaatatcaaaacattggccacaataggcattaacatgagttttaaggccacaccagtaacaccacgtagcccc |
5863559 |
T |
|
| Q |
517 |
taaatggaagtttcatgtgannnnnnnnnagggatatattattgcattaaatttactggaccaaccatccagagcataggtggttatttttcagcctcat |
616 |
Q |
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| T |
5863558 |
taaatggaagtttcatgtgatttttttttagggatttattattgcattaaatttactggaccaaccatccagagcataggtggttatttttcagcctcat |
5863459 |
T |
|
| Q |
617 |
gaaagatcatgaacaagatgaaaggctgaggccaattgtgcagtgtagataaattacatttttctttaggttttgttttgtttcctcttatcacctcata |
716 |
Q |
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| T |
5863458 |
gaaagatcatgaacaagatgaaaggctgaggccaattgtgcagtgtagataaattacatttttcttcaggttttgttttgtttcctcttatcacctcata |
5863359 |
T |
|
| Q |
717 |
cactgcatacgaacatatctaaataggaattcaaaatatggatcatacaaacaaatgactaagtgcatctttgatattgtggtggatgtgttataatcat |
816 |
Q |
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| T |
5863358 |
cactgcataagaacatatctaaataggaattcaaaatatggatcatacaaacaaatgactaagtgcatctttgatattgtggtggatgtgttataatcat |
5863259 |
T |
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| Q |
817 |
aacaattcaacgtgaattttcaaaatctacacttgtaacattttcaaaattacaacgactagttgtgattctaacaaactaactctgctaccaaatatgc |
916 |
Q |
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| T |
5863258 |
aacaattcaacgtgaattttcaaaatctacacttgtaacattttcaaaattacaacgactagtcgtgattctaacaaactaactctgctaccaaatatgc |
5863159 |
T |
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| Q |
917 |
atctgtctttattgtttaactcgattttattttagataacattagtcctt |
966 |
Q |
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| T |
5863158 |
atctgtctttattgtttaactcgatcttattttagataacattagtcctt |
5863109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 59 - 204
Target Start/End: Complemental strand, 5864024 - 5863875
Alignment:
| Q |
59 |
aagtcttgatcaattttctgttttaatgcat----caaatgatataggagtggaatgataaactgctaattcagcaaaatccatatctcatttggcactt |
154 |
Q |
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| T |
5864024 |
aagtcttgatcaattttctgttttaatgcatgcatcatatgatatacgagtggaatgataaagtgctaattcagcaaaatccatatctcatttggcactt |
5863925 |
T |
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| Q |
155 |
acttggttggtccactcaataattctagtggatattcaaacgcgaccaag |
204 |
Q |
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| T |
5863924 |
acttggttggtccactcaataattctagtggatattcaaacgcgatcaag |
5863875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 5864077 - 5864038
Alignment:
| Q |
1 |
atacaatggcgtagtggcgttcaatttcacgtatcaagtg |
40 |
Q |
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| T |
5864077 |
atacaatggcgtagcggcgttcaatttcacgtatcatgtg |
5864038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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