View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14295_low_11 (Length: 483)

Name: NF14295_low_11
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14295_low_11
NF14295_low_11
[»] chr4 (10 HSPs)
chr4 (13-466)||(51578056-51578509)
chr4 (120-248)||(49106480-49106609)
chr4 (170-247)||(21503706-21503784)
chr4 (170-248)||(3461143-3461222)
chr4 (408-466)||(21433901-21433960)
chr4 (170-248)||(49108634-49108713)
chr4 (170-248)||(11652393-11652472)
chr4 (170-248)||(26984668-26984747)
chr4 (170-248)||(26998741-26998820)
chr4 (170-248)||(50077200-50077279)
[»] chr2 (11 HSPs)
chr2 (170-248)||(2841018-2841097)
chr2 (170-244)||(6471710-6471785)
chr2 (408-467)||(4237278-4237338)
chr2 (409-455)||(1469768-1469815)
chr2 (170-248)||(10763879-10763958)
chr2 (170-248)||(30732035-30732114)
chr2 (170-248)||(30734015-30734094)
chr2 (170-248)||(32918107-32918186)
chr2 (408-465)||(12779529-12779587)
chr2 (410-466)||(42094233-42094290)
chr2 (408-455)||(44247601-44247649)
[»] chr8 (7 HSPs)
chr8 (170-248)||(41841153-41841232)
chr8 (170-248)||(44879010-44879089)
chr8 (170-248)||(44880832-44880911)
chr8 (118-248)||(10944348-10944479)
chr8 (170-248)||(40054339-40054418)
chr8 (409-455)||(40175923-40175970)
chr8 (408-465)||(34504405-34504463)
[»] chr5 (5 HSPs)
chr5 (170-248)||(7524995-7525074)
chr5 (170-254)||(4103266-4103351)
chr5 (170-248)||(1716452-1716532)
chr5 (170-248)||(3643667-3643746)
chr5 (408-466)||(3907682-3907741)
[»] chr1 (17 HSPs)
chr1 (170-248)||(11872482-11872561)
chr1 (128-248)||(14681626-14681747)
chr1 (170-248)||(14654341-14654420)
chr1 (170-248)||(14664132-14664211)
chr1 (170-248)||(14669710-14669789)
chr1 (170-248)||(14683777-14683856)
chr1 (170-248)||(14706115-14706194)
chr1 (170-248)||(14708605-14708684)
chr1 (170-248)||(33988097-33988176)
chr1 (170-248)||(38175531-38175610)
chr1 (128-248)||(14652552-14652673)
chr1 (128-248)||(14662343-14662464)
chr1 (128-248)||(14674508-14674629)
chr1 (169-248)||(14667111-14667191)
chr1 (170-248)||(14679886-14679965)
chr1 (170-248)||(14716318-14716397)
chr1 (409-466)||(23317961-23318019)
[»] chr6 (4 HSPs)
chr6 (170-239)||(11333266-11333336)
chr6 (176-248)||(8875716-8875789)
chr6 (170-248)||(10791653-10791732)
chr6 (170-248)||(10795891-10795970)
[»] chr3 (1 HSPs)
chr3 (409-464)||(45332573-45332629)
[»] chr7 (3 HSPs)
chr7 (410-454)||(316389-316434)
chr7 (408-455)||(2276305-2276353)
chr7 (408-451)||(7526146-7526190)


Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 13 - 466
Target Start/End: Complemental strand, 51578509 - 51578056
Alignment:
Q  13 aaaatattctcattagagtaaaattgaggttggatgtggtnnnnnnntctcattaaattaaaattggacattactgaagattagtatatatcgtttgatg 112  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  51578509 aaaatattctcattagagtaaaattgaggttggatgtggtaaaaaaatctcattaaattaaaattggacattactgaagattagtatatatcgttcgatg 51578410  T
Q  113 tttgggtgacacataagaaacctagtaggaagctactaaagtggtatctttctttcgaaaaagtaatttaatatcgtgtgatctattgaaccatatatca 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  51578409 tttgggtgacacataagaaacctagtaggaagctactaaagtggtatctttctttcgaaaaagtaatttaatatcgtgtgatctattgaaccatatatta 51578310  T
Q  213 gatatcaactaataagaacatatattacacttgatcctaacctagaatggtatgagctggaacaagtattcgaagctggatttatgtctaacataaactc 312  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  51578309 gatatgaactaataagaacatatattacacttgatcctaacctagaatggtatgagctggaacaagtcttcgaagctggatttatgtctaacataaactt 51578210  T
Q  313 agtgactttgctgacttcgcaacgtgagactcatgcagcatcttgagactcttgcagggcactctcgtgaatcatgaaattttaataggattagagattg 412  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51578209 agtgactttgctgacttcgcaatgtgagactcatgcagcatcttgagactcttgcagggcactctcgtgaatcatgaaattttaataggattagagattg 51578110  T
Q  413 gttaaaattcacatggatccaccaaatttctatgagacccacacgaattggtgg 466  Q
    ||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||    
T  51578109 gttaaaattcacatggacccaccaaatttgtatgagaccgacacgaattggtgg 51578056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 120 - 248
Target Start/End: Original strand, 49106480 - 49106609
Alignment:
Q  120 gacacataagaaacctagtaggaagctactaaagtggtatctttctttcgaaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tc 218  Q
    ||||||||||||| | ||||| |||||||||| |||   |||  |  || |||||||||||||||||||||||||| |||| |||| |||||||||| |     
T  49106480 gacacataagaaatccagtagcaagctactaaggtgacttctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatatta 49106579  T
Q  219 aactaataagaacatatattacacttgatc 248  Q
    |||| ||||||||| ||| |||||||||||    
T  49106580 aactgataagaacagatactacacttgatc 49106609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 21503784 - 21503706
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgat 247  Q
    ||||| |||||||||||||||||| ||||||| ||| |||||||||| | |||| ||||||||| ||| ||||||||||    
T  21503784 aaaaaataatttaatatcgtgtgacctattgagccacatatcagatattaaactgataagaacagatactacacttgat 21503706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 3461143 - 3461222
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||||||||| | |||||  || |||||||||| | |||| ||||||||| ||| |||||||||||    
T  3461143 aaaaagtaatttaatatcgtgtgacccattgagtcacatatcagatattaaactgataagaacagatactacacttgatc 3461222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 408 - 466
Target Start/End: Original strand, 21433901 - 21433960
Alignment:
Q  408 gattggttaaaattcacatg-gatccaccaaatttctatgagacccacacgaattggtgg 466  Q
    |||||||||||||||||||| || ||||||||||| ||||||||||||| || |||||||    
T  21433901 gattggttaaaattcacatgagacccaccaaatttatatgagacccacatgatttggtgg 21433960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 49108634 - 49108713
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||||||||| | |||||  || |||||||||| | |||| ||||||||| ||| |||||||||||    
T  49108634 aaaaagtaatttaatatcgtgtgacccattgagtcacatatcagatattaaactgataagaacagatactacacttgatc 49108713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 11652393 - 11652472
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    ||||| |||||||||||||||||| | ||||  ||| |||||||||| | |||| ||||||||| ||| |||||||||||    
T  11652393 aaaaaataatttaatatcgtgtgacccattgggccacatatcagatattaaactgataagaacagatactacacttgatc 11652472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 26984668 - 26984747
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||||||||  | ||||  ||| |||||||||| | |||| ||||||||| ||| |||||||||||    
T  26984668 aaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatc 26984747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 26998741 - 26998820
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||||||||  | ||||  ||| |||||||||| | |||| ||||||||| ||| |||||||||||    
T  26998741 aaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatc 26998820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 50077200 - 50077279
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||| ||||| | |||| | || |||||||||| | |||| ||||||||| ||| |||||||||||    
T  50077200 aaaaagtaatttaatatcatgtgaaccattggaacacatatcagatattaaactgataagaacagatactacacttgatc 50077279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 2841018 - 2841097
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||| | |||| ||||||||| ||| |||||||||||    
T  2841018 aaaaagtaatttaatatcgtgtgatccattgaaccacatatcagatattaaactgataagaacagatactacacttgatc 2841097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 6471710 - 6471785
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacactt 244  Q
    ||||||||| |||||||| ||||||| |||  ||| ||||||||||| | |||||||||||||||||| |||||||    
T  6471710 aaaaagtaacttaatatcatgtgatccattagaccgtatatcagatattaaactaataagaacatatactacactt 6471785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 467
Target Start/End: Original strand, 4237278 - 4237338
Alignment:
Q  408 gattggttaaaattcacatgg-atccaccaaatttctatgagacccacacgaattggtggt 467  Q
    |||||||||||||| |||||| ||||||||||||| |||| |||||||| || ||||||||    
T  4237278 gattggttaaaatttacatgggatccaccaaatttgtatgggacccacatgatttggtggt 4237338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 1469768 - 1469815
Alignment:
Q  409 attggttaaaattcacatgg-atccaccaaatttctatgagacccaca 455  Q
    |||||||||||||||||||| ||||||||||||| |||| ||||||||    
T  1469768 attggttaaaattcacatggaatccaccaaatttatatgggacccaca 1469815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 10763879 - 10763958
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagatatcaa-ctaataagaacatatattacacttgatc 248  Q
    ||||||||||||||||| || ||  | ||||| ||| ||||||||||| || || ||||||||||||| |||||||||||    
T  10763879 aaaaagtaatttaatattgtatggaccattgatccacatatcagatattaaactgataagaacatatactacacttgatc 10763958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 30732114 - 30732035
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||||||||| | ||||  ||| |||| ||||| | |||| ||||||||| ||| |||||||||||    
T  30732114 aaaaagtaatttaatatcgtgtgaaccattggtccacatattagatattaaactgataagaacagatactacacttgatc 30732035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 30734094 - 30734015
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||| ||||| | ||||  ||| |||||||||| | |||| ||||||||| ||| |||||||||||    
T  30734094 aaaaagtaatttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatc 30734015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 32918186 - 32918107
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||||||||  | ||||  ||| |||||||||| | |||| ||||||||| ||| |||||||||||    
T  32918186 aaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatc 32918107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 465
Target Start/End: Original strand, 12779529 - 12779587
Alignment:
Q  408 gattggttaaaattcacat-ggatccaccaaatttctatgagacccacacgaattggtg 465  Q
    ||||||||||||||||||| ||||||||||||||  |||| |||||||| || ||||||    
T  12779529 gattggttaaaattcacatgggatccaccaaattcatatgtgacccacatgatttggtg 12779587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 466
Target Start/End: Original strand, 42094233 - 42094290
Alignment:
Q  410 ttggttaaaattcacatgg-atccaccaaatttctatgagacccacacgaattggtgg 466  Q
    ||||||||||||||||||| | ||||||||||| |||| |||||||| || |||||||    
T  42094233 ttggttaaaattcacatgggacccaccaaatttatatgggacccacatgatttggtgg 42094290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 455
Target Start/End: Complemental strand, 44247649 - 44247601
Alignment:
Q  408 gattggttaaaattcacat-ggatccaccaaatttctatgagacccaca 455  Q
    ||||||||||||||||||| ||||||| ||||||| |||| ||||||||    
T  44247649 gattggttaaaattcacatgggatccatcaaatttgtatgggacccaca 44247601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 41841153 - 41841232
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||||||||| | |||| |||| |||||||||| | |||| ||||||||| ||| |||||||||||    
T  41841153 aaaaagtaatttaatatcgtgtgacccattggaccacatatcagatattaaactgataagaacagatactacacttgatc 41841232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 44879089 - 44879010
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||| ||||| | ||||| ||| |||||||||| | |||| ||||||||| ||| |||||||||||    
T  44879089 aaaaagtaatttaatatcatgtgacccattgagccacatatcagatattaaactgataagaacagatactacacttgatc 44879010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 44880832 - 44880911
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||| ||||| | ||||| ||| |||||||||| | |||| ||||||||| ||| |||||||||||    
T  44880832 aaaaagtaatttaatatcatgtgacccattgagccacatatcagatattaaactgataagaacagatactacacttgatc 44880911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 248
Target Start/End: Original strand, 10944348 - 10944479
Alignment:
Q  118 gtgacacataagaaacctagtaggaagctactaaagtggtatctttctttcgaaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata- 216  Q
    |||||||  ||||| |||||||| ||||||||||| |||  |||  |  || |||||||||||||||||||||||| | |||   ||| |||| |||||     
T  10944348 gtgacactcaagaagcctagtagcaagctactaaaatggcttctccccatcaaaaaagtaatttaatatcgtgtgaaccatttgtccacatataagatat 10944447  T
Q  217 tcaactaataagaacatatattacacttgatc 248  Q
    | |||| ||||||||| ||| |||||||||||    
T  10944448 taaactgataagaacagatactacacttgatc 10944479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 40054418 - 40054339
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||||| ||| | ||||  ||| |||||||||| | |||| ||||||||| ||| |||||||||||    
T  40054418 aaaaagtaatttaatatcgtatgacccattgggccacatatcagatattaaactgataagaacagatactacacttgatc 40054339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 40175923 - 40175970
Alignment:
Q  409 attggttaaaattcacatgg-atccaccaaatttctatgagacccaca 455  Q
    |||||||||||||||||||| ||||||||||||| |||| ||||||||    
T  40175923 attggttaaaattcacatgggatccaccaaatttatatgggacccaca 40175970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 465
Target Start/End: Original strand, 34504405 - 34504463
Alignment:
Q  408 gattggttaaaattcacatggatc-caccaaatttctatgagacccacacgaattggtg 465  Q
    |||||||||||||||||||||| | |||||||||| |||| |||||||| || ||||||    
T  34504405 gattggttaaaattcacatggaactcaccaaatttatatgggacccacatgatttggtg 34504463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 7525074 - 7524995
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||||||||||| |||| | || |||||||||| | |||| ||||||||| ||| |||||||||||    
T  7525074 aaaaagtaatttaatatcgtgtgatccattggatcacatatcagatattaaactgataagaacagatactacacttgatc 7524995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 254
Target Start/End: Complemental strand, 4103351 - 4103266
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatcctaacc 254  Q
    |||||| ||||||||||||||||  ||||||  ||| |||||||||| | |||| ||||||||| ||| ||||||||||| |||||    
T  4103351 aaaaagcaatttaatatcgtgtggactattgggccacatatcagatattaaactgataagaacagatactacacttgatcttaacc 4103266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 1716452 - 1716532
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatcta-ttgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||||||||| | | ||| |||| |||||||||| | |||| ||||||||| ||| |||||||||||    
T  1716452 aaaaagtaatttaatatcgtgtgacccatttggaccacatatcagatattaaactgataagaacagatactacacttgatc 1716532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 3643746 - 3643667
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||||||||| | | ||  ||| |||||||||| | |||| ||||||||| ||| |||||||||||    
T  3643746 aaaaagtaatttaatatcgtgtgacccaatgggccacatatcagatattaaactgataagaacagatactacacttgatc 3643667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 466
Target Start/End: Original strand, 3907682 - 3907741
Alignment:
Q  408 gattggttaaaattcacat-ggatccaccaaatttctatgagacccacacgaattggtgg 466  Q
    ||||||||||||||||||| ||| ||||||||||| |||| |||||||| || |||||||    
T  3907682 gattggttaaaattcacatgggacccaccaaatttatatgggacccacatgatttggtgg 3907741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 11872482 - 11872561
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||||||||| | ||||||||| |||||| ||| | |||| ||||||||| ||| |||||||||||    
T  11872482 aaaaagtaatttaatatcgtgtgacccattgaaccacatatcatatattaaactgataagaacagatagtacacttgatc 11872561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 248
Target Start/End: Complemental strand, 14681747 - 14681626
Alignment:
Q  128 agaaacctagtaggaagctactaaagtggtatctttctttcgaaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaata 226  Q
    |||| |||||||| ||||||||||| |||  |||  |  || |||||||||||||||||||||||| | ||||  ||| |||||||||| | |||| |||    
T  14681747 agaagcctagtagcaagctactaaaatggcttctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgata 14681648  T
Q  227 agaacatatattacacttgatc 248  Q
    |||||| ||| |||||||||||    
T  14681647 agaacagatactacacttgatc 14681626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 14654341 - 14654420
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||||||||| | ||||  ||| |||||||||| | |||| ||||||||| ||| |||||||||||    
T  14654341 aaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatc 14654420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 14664132 - 14664211
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||||||||| | ||||  ||| |||||||||| | |||| ||||||||| ||| |||||||||||    
T  14664132 aaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatc 14664211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 14669710 - 14669789
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||||||||| | ||||  ||| |||||||||| | |||| ||||||||| ||| |||||||||||    
T  14669710 aaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatc 14669789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 14683856 - 14683777
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||||||||| | ||||  ||| |||||||||| | |||| ||||||||| ||| |||||||||||    
T  14683856 aaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatc 14683777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 14706194 - 14706115
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||||||||| | ||||  ||| |||||||||| | |||| ||||||||| ||| |||||||||||    
T  14706194 aaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatc 14706115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 14708684 - 14708605
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||||||||| | ||||  ||| |||||||||| | |||| ||||||||| ||| |||||||||||    
T  14708684 aaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatc 14708605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 33988176 - 33988097
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    ||||||||||||||||||||||||   ||||| ||| |||||||||| | |||| ||||||||| ||| |||||||||||    
T  33988176 aaaaagtaatttaatatcgtgtgactcattgagccacatatcagatattaaactgataagaacagatactacacttgatc 33988097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 38175531 - 38175610
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||||||||| | |||| | || |||||||||| | |||| ||||||||| ||| |||||||||||    
T  38175531 aaaaagtaatttaatatcgtgtgacccattggaacacatatcagatattaaactgataagaacagatactacacttgatc 38175610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 248
Target Start/End: Complemental strand, 14652673 - 14652552
Alignment:
Q  128 agaaacctagtaggaagctactaaagtggtatctttctttcgaaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaata 226  Q
    |||| |||||||| ||||||||||| |||  |||  |  || |||||||||||||||||||||||  | ||||  ||| |||||||||| | |||| |||    
T  14652673 agaagcctagtagcaagctactaaaatggcttctccccctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgata 14652574  T
Q  227 agaacatatattacacttgatc 248  Q
    |||||| ||| |||||||||||    
T  14652573 agaacagatactacacttgatc 14652552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 248
Target Start/End: Complemental strand, 14662464 - 14662343
Alignment:
Q  128 agaaacctagtaggaagctactaaagtggtatctttctttcgaaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaata 226  Q
    |||| |||||||| ||||||||||| |||  |||  |  || |||||||||||||||||||||||  | ||||  ||| |||||||||| | |||| |||    
T  14662464 agaagcctagtagcaagctactaaaatggcttctccccctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgata 14662365  T
Q  227 agaacatatattacacttgatc 248  Q
    |||||| ||| |||||||||||    
T  14662364 agaacagatactacacttgatc 14662343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 248
Target Start/End: Complemental strand, 14674629 - 14674508
Alignment:
Q  128 agaaacctagtaggaagctactaaagtggtatctttctttcgaaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaata 226  Q
    |||| |||||||| ||||||||||| |||  |||  |  || |||||||||||||||||| ||||| | ||||  ||| |||||||||| | |||| |||    
T  14674629 agaagcctagtagcaagctactaaaatggcttctccccctcaaaaaagtaatttaatatcatgtgaaccattggtccacatatcagatattaaactgata 14674530  T
Q  227 agaacatatattacacttgatc 248  Q
    |||||| ||| |||||||||||    
T  14674529 agaacagatactacacttgatc 14674508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 14667111 - 14667191
Alignment:
Q  169 gaaaaagtaatttaatatcgtgtgatctattgaaccatatatcagatatcaa-ctaataagaacatatattacacttgatc 248  Q
    ||||||||||||||||||| ||||| | ||||  |||  |||||||||| || |||||||||||| ||| |||||||||||    
T  14667111 gaaaaagtaatttaatatcatgtgaaccattggtccacgtatcagatattaaactaataagaacagatactacacttgatc 14667191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 14679965 - 14679886
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||| ||||| | ||||  ||| |||||||||| | |||| ||||||||| ||| |||||||||||    
T  14679965 aaaaagtaatttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatc 14679886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 14716397 - 14716318
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||||||||| | ||||  ||| |||| ||||| | |||| ||||||||| ||| |||||||||||    
T  14716397 aaaaagtaatttaatatcgtgtgaaccattggtccacatattagatattaaactgataagaacagatactacacttgatc 14716318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 466
Target Start/End: Complemental strand, 23318019 - 23317961
Alignment:
Q  409 attggttaaaattcacatg-gatccaccaaatttctatgagacccacacgaattggtgg 466  Q
    ||||||||||||||||||| ||||||| |||||| |||| |||||||| || |||||||    
T  23318019 attggttaaaattcacatgagatccactaaatttatatgggacccacatgatttggtgg 23317961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 11333336 - 11333266
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatatta 239  Q
    ||||||||||||||||||||||||||  ||| |||| |||||||||| | |||| ||||||||||||||||    
T  11333336 aaaaagtaatttaatatcgtgtgatccgttggaccacatatcagatattaaactgataagaacatatatta 11333266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 8875789 - 8875716
Alignment:
Q  176 taatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||| |||||||| |||| |||||||||| | || | ||||||||| |||||||||||||||    
T  8875789 taatttaatatcgtgtaatctattggaccacatatcagatattaaattgataagaacagatattacacttgatc 8875716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 10791653 - 10791732
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||| ||||| | |||| | || |||||||||| | |||| ||||||||| ||| |||||||||||    
T  10791653 aaaaagtaatttaatatcatgtgacccattggatcacatatcagatattaaactgataagaacagatactacacttgatc 10791732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 10795891 - 10795970
Alignment:
Q  170 aaaaagtaatttaatatcgtgtgatctattgaaccatatatcagata-tcaactaataagaacatatattacacttgatc 248  Q
    |||||||||||||||||||||||| | ||||   || |||||||||| | |||| ||||||||| ||| |||||||||||    
T  10795891 aaaaagtaatttaatatcgtgtgacccattgggtcacatatcagatattaaactgataagaacagatactacacttgatc 10795970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 464
Target Start/End: Original strand, 45332573 - 45332629
Alignment:
Q  409 attggttaaaattcacatgg-atccaccaaatttctatgagacccacacgaattggt 464  Q
    |||||||||||||||||||| ||||||||||||| |||| |||||||| || |||||    
T  45332573 attggttaaaattcacatggaatccaccaaatttatatgggacccacatgatttggt 45332629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 454
Target Start/End: Original strand, 316389 - 316434
Alignment:
Q  410 ttggttaaaattcacatg-gatccaccaaatttctatgagacccac 454  Q
    |||||||||||||||||| | |||||||||||| ||||||||||||    
T  316389 ttggttaaaattcacatgagttccaccaaatttgtatgagacccac 316434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 455
Target Start/End: Original strand, 2276305 - 2276353
Alignment:
Q  408 gattggttaaaattcacatggat-ccaccaaatttctatgagacccaca 455  Q
    ||||||||||||||||||||||| ||||||||||| || | ||||||||    
T  2276305 gattggttaaaattcacatggatcccaccaaatttataagggacccaca 2276353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 451
Target Start/End: Original strand, 7526146 - 7526190
Alignment:
Q  408 gattggttaaaattcacatggat-ccaccaaatttctatgagacc 451  Q
    |||| |||||||||||||||||| ||||||||||| |||||||||    
T  7526146 gatttgttaaaattcacatggatcccaccaaatttatatgagacc 7526190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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