View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14295_low_13 (Length: 468)
Name: NF14295_low_13
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14295_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 42204473 - 42204237
Alignment:
| Q |
1 |
tttagctaggcaataaacaatgagagtggcagaccggcatctcttctgcgttaattctgagtgaacgaagacatctccaatatgaacaattagaatgcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42204473 |
tttagctaggcaataaacaatgagagtggcagaccggcatatcttctgcgttaattctgagtgaacgaagacatctccaatatgaacatttagaatgcca |
42204374 |
T |
|
| Q |
101 |
cgatcttctgttcccactttagactgatcacatatccccattagtatcatcaatattagacttaaaaactggacgaatataagcatgaagaaagtaacct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42204373 |
cgatcttctgttcccactttagactgatcacatatccccattagtatcatcaatgttagacttaaaaactggacgaatataagcatgaagaaagtaacct |
42204274 |
T |
|
| Q |
201 |
ttttaagttcaagtttgattatcgttattgtttgaag |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
42204273 |
ttttaagttcaagtttgattatcgttattgtttgaag |
42204237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 42213341 - 42213105
Alignment:
| Q |
1 |
tttagctaggcaataaacaatgagagtggcagaccggcatctcttctgcgttaattctgagtgaacgaagacatctccaatatgaacaattagaatgcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42213341 |
tttagctaggcaataaacaatgagagtggcagaccggcatatcttctgcgttaattctgagtgaacgaagacatctccaatatgaacatttagaatgcca |
42213242 |
T |
|
| Q |
101 |
cgatcttctgttcccactttagactgatcacatatccccattagtatcatcaatattagacttaaaaactggacgaatataagcatgaagaaagtaacct |
200 |
Q |
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| T |
42213241 |
cgatcttctgttcccactttagactgatcacatatccccattagtatcatcaatgttagacttaaaaactggacgaatataagcatgaagaaagtaacct |
42213142 |
T |
|
| Q |
201 |
ttttaagttcaagtttgattatcgttattgtttgaag |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
42213141 |
ttttaagttcaagtttgattatcgttattgtttgaag |
42213105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 264 - 450
Target Start/End: Complemental strand, 42204210 - 42204024
Alignment:
| Q |
264 |
gacagagcatatctgcctaagaaagagtggtcttctcaacaaaaacagccatggaaatttaaaaagatacattcaaaacattttcttctcaaattgaagc |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42204210 |
gacagagcatatctgcctaagaaagagtggtcttctcaacaaaaacagccatggaaatttaaaaagatacattcaaaacattttcttctcaaattgaagc |
42204111 |
T |
|
| Q |
364 |
aatgcattgtccgattgatgtcctgccttcatgatggcttgcaaggattatcattatagctaatgctttgtcaaccatcccacgtcc |
450 |
Q |
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| T |
42204110 |
aatgcattgtccgattgatgtcctgccttcatgatggcttgcaaggattatcattatagctaatgctttgtcaaccatcccacgtcc |
42204024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 264 - 450
Target Start/End: Complemental strand, 42213078 - 42212892
Alignment:
| Q |
264 |
gacagagcatatctgcctaagaaagagtggtcttctcaacaaaaacagccatggaaatttaaaaagatacattcaaaacattttcttctcaaattgaagc |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42213078 |
gacagagcatatctgcctaagaaagagtggtcttctcaacaaaaacagccatggaaatttaaaaagatacattcaaaacattttcttctcaaattgaagc |
42212979 |
T |
|
| Q |
364 |
aatgcattgtccgattgatgtcctgccttcatgatggcttgcaaggattatcattatagctaatgctttgtcaaccatcccacgtcc |
450 |
Q |
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| T |
42212978 |
aatgcattgtccgattgatgtcctgccttcatgatggcttgcaaggattatcattatagctaatgctttgtcaaccatcccacgtcc |
42212892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 269 - 450
Target Start/End: Complemental strand, 42219021 - 42218843
Alignment:
| Q |
269 |
agcatatctgcctaagaaagagtggtcttctcaacaaaaacagccatggaaatttaaaaagatacattcaaaacattttcttctcaaa-ttgaagcaatg |
367 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
42219021 |
agcatatcttccgaagaaagagtggtcttctcaacaaaaacagccatggaaatgtaaaaagatacattcaaaaca---tcttctcaaagttgaagcaatg |
42218925 |
T |
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| Q |
368 |
cattgtccgattgatgtcctgccttcatgatggcttgcaaggattatcattatagctaatgctttgtcaaccatcccacgtcc |
450 |
Q |
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| T |
42218924 |
cattgaccgattgatgtcctaccttcatgatggcttgcaagg-ttatcattatagctaatgctttgtcaaccatcccacgtcc |
42218843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 111 - 237
Target Start/End: Complemental strand, 42219176 - 42219050
Alignment:
| Q |
111 |
ttcccactttagactgatcacatatccccattagtatcatcaatattagacttaaaaactggacgaatataagcatgaagaaagtaacctttttaagttc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42219176 |
ttcccactttagactgatcacatatccccattagtatcatcaaggctagacttaaaaactggacgaatataagcatgaagaaagtaacctttttaagttc |
42219077 |
T |
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| Q |
211 |
aagtttgattatcgttattgtttgaag |
237 |
Q |
| |
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||||| |||||| |||||||||||||| |
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| T |
42219076 |
aagttcgattattgttattgtttgaag |
42219050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 446
Target Start/End: Original strand, 42420163 - 42420232
Alignment:
| Q |
377 |
attgatgtcctgccttcatgatggcttgcaaggattatcattatagctaatgctttgtcaaccatcccac |
446 |
Q |
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|||| |||||| ||||||||||| | ||||||||| ||| |||||||| ||||| |||||||||||||| |
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| T |
42420163 |
attgctgtccttccttcatgatgacctgcaaggatcgtcagtatagctagtgcttcgtcaaccatcccac |
42420232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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