View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14295_low_14 (Length: 464)
Name: NF14295_low_14
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14295_low_14 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 16)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 8455606 - 8455160
Alignment:
| Q |
1 |
agagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctacc |
100 |
Q |
| |
|
|||||||||||||||| ||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8455606 |
agagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgatcttaaacatgttgtttatgaagcagaccaactattagatgagatttctact |
8455507 |
T |
|
| Q |
101 |
gatgcaatgctaaataatctgaaagctgaatctgaaccacttaccaccaatttattgggcatggtttcagctttaactagaaatccatttgaatctaggc |
200 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8455506 |
gatgcaatgctaaataacctgaaagcagaatctgaaccacttaccaccaatttattgggcttggtttcagctttatctagaaatccatttgaatctaggc |
8455407 |
T |
|
| Q |
201 |
tcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtcagttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8455406 |
tcaatgaacaactggataaactagaatttcttgcaaagaaaaggaaagagttgagattgggagaaggtccttgtgctaggaatgaaggcttagtcagttg |
8455307 |
T |
|
| Q |
301 |
gaaaccttcacaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgttgataaagaaaaactaataaagtttttacttgca |
400 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||| ||||||||||||||| |
|
|
| T |
8455306 |
gaaaccttcaaaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtcgagatgttgataaggaaaaattaatcaagtttttacttgca |
8455207 |
T |
|
| Q |
401 |
ggcaatgatagtggcaaccatgttccaataatcagcgtagtcggttt |
447 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
8455206 |
ggcaatgatagtggcaaccaggttccaataatcagcatagtcggttt |
8455160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 8590681 - 8590235
Alignment:
| Q |
1 |
agagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctacc |
100 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8590681 |
agagataaagcagtaccgaagcaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctact |
8590582 |
T |
|
| Q |
101 |
gatgcaatgctaaataatctgaaagctgaatctgaaccacttaccaccaatttattgggcatggtttcagctttaactagaaatccatttgaatctaggc |
200 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||| || ||||||||||||| |||||||||||||||||| ||||||||||||| | |||| |
|
|
| T |
8590581 |
gatgcaatgctaaataagctgaaagctaaatctgaaccacttagcagcaatttattgggcttggtttcagctttaactacaaatccatttgaaaccaggc |
8590482 |
T |
|
| Q |
201 |
tcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtcagttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| |
|
|
| T |
8590481 |
tcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccctgtgctagtaacgaaggcttagtcagttg |
8590382 |
T |
|
| Q |
301 |
gaaaccttcacaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgttgataaagaaaaactaataaagtttttacttgca |
400 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
8590381 |
gaaaccttcaaaaaggttgtcatctacagctcttgtggatgagtcgagcatatatggtagagatgttgataagaaaaaactaatcaagtttttacttgca |
8590282 |
T |
|
| Q |
401 |
ggcaatgatagtggcaaccatgttccaataatcagcgtagtcggttt |
447 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
8590281 |
ggcaatgatagtggcaaccgcgttccaataatcagcatagtcggttt |
8590235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 6736942 - 6736496
Alignment:
| Q |
1 |
agagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctacc |
100 |
Q |
| |
|
|||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6736942 |
agagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttctttatgaagcagaccaactattggatgagatttctact |
6736843 |
T |
|
| Q |
101 |
gatgcaatgctaaataatctgaaagctgaatctgaaccacttaccaccaatttattgggcatggtttcagctttaactagaaatccatttgaatctaggc |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
6736842 |
gatgcaatgctaaataaggtgaaagctgaatctgaaccacttaccaccaatttattgggcttggtttcagctttaactacaaatccatttgaatgtaggc |
6736743 |
T |
|
| Q |
201 |
tcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtcagttg |
300 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
6736742 |
tcaatgaacagctcgataaactagaacttcttgcaaagcaaaagaaagatttgagattgggagaaggtcctagtgctagtaatgaaggcttagtcagttg |
6736643 |
T |
|
| Q |
301 |
gaaaccttcacaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgttgataaagaaaaactaataaagtttttacttgca |
400 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||| ||||||||||| |||||||||||| || |
|
|
| T |
6736642 |
gaaaccttcaaaaaggttgtcatctacagctctcctggatgagtcaagcatatatggtagagatgatgataaggaaaaactaatcaagtttttacttaca |
6736543 |
T |
|
| Q |
401 |
ggcaatgatagtggcaaccatgttccaataatcagcgtagtcggttt |
447 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||| |||| ||||| |
|
|
| T |
6736542 |
ggcaatgacagtggcaaccaggttccaataattagcatagtgggttt |
6736496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 6553515 - 6553961
Alignment:
| Q |
1 |
agagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctacc |
100 |
Q |
| |
|
|||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6553515 |
agagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaggcagaccaactattagatgagatttctact |
6553614 |
T |
|
| Q |
101 |
gatgcaatgctaaataatctgaaagctgaatctgaaccacttaccaccaatttattgggcatggtttcagctttaactagaaatccatttgaatctaggc |
200 |
Q |
| |
|
||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
6553615 |
gatgcaatgataaataagcaaaaagctgaatctgaaccacttaccaccaatttattgggtttcgtttcagctttaactacaaatccatttgaatgtaggc |
6553714 |
T |
|
| Q |
201 |
tcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtcagttg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
6553715 |
tcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaagatttgagattgggagaaggtcctagtgctagtaatgaaggcttagtcagttg |
6553814 |
T |
|
| Q |
301 |
gaaaccttcacaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgttgataaagaaaaactaataaagtttttacttgca |
400 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||| |||| ||||||||||||| | |
|
|
| T |
6553815 |
gaaaccttcaaaaaggttgtcgtctacagctctcgtggatgagtcaagcatatatggtagggatgttgataaggaaaaattaatcaagtttttacttgaa |
6553914 |
T |
|
| Q |
401 |
ggcaatgatagtggcaaccatgttccaataatcagcgtagtcggttt |
447 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||| |||| ||||| |
|
|
| T |
6553915 |
ggcaatgacggtggcaaccgggttccaataatcagcatagtgggttt |
6553961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 6479059 - 6479505
Alignment:
| Q |
1 |
agagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctacc |
100 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6479059 |
agagataaagcagtaccaaatcatatatgtgaagaagtggcttgataaacttaaacatgttgtttatgaagcagaccaactattagatgagatatctact |
6479158 |
T |
|
| Q |
101 |
gatgcaatgctaaataatctgaaagctgaatctgaaccacttaccaccaatttattgggcatggtttcagctttaactagaaatccatttgaatctaggc |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6479159 |
gatgcaatgctaaataagctgaaagctgaatctgaaccacttaccaccaatttattgggcgtggtttcagctttaactacaaatccatttgaatctaggc |
6479258 |
T |
|
| Q |
201 |
tcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtcagttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||| | ||||||||||| ||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
6479259 |
tcaatgaacaactggataaactagaatttcttgcaatgcaaaagtaggtgttgggattggcagaaggtcccagtgctagtaatgaaggcttagtcagttg |
6479358 |
T |
|
| Q |
301 |
gaaaccttcacaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgttgataaagaaaaactaataaagtttttacttgca |
400 |
Q |
| |
|
|||||||||| |||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| || ||| |||| || || |||||||||||| |
|
|
| T |
6479359 |
gaaaccttcaaaaagattgtcatctacggctctcgtggatgagtccagcatatatggcagagatgttgacaaggaagaacttatcaaatttttacttgca |
6479458 |
T |
|
| Q |
401 |
ggcaatgatagtggcaaccatgttccaataatcagcgtagtcggttt |
447 |
Q |
| |
|
|||||||| ||||| | ||| ||||| ||||||||| |||| ||||| |
|
|
| T |
6479459 |
ggcaatgacagtggaacccaggttccgataatcagcatagttggttt |
6479505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 27 - 447
Target Start/End: Complemental strand, 6948195 - 6947775
Alignment:
| Q |
27 |
atgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctaccgatgcaatgctaaataatctgaaagc |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
6948195 |
atgtgaagaagtggcttgatgaacttaaacatgttgtctatgaggcagaccaactgttagatgagatttctactgatgcaatgctaaataagctgaaagc |
6948096 |
T |
|
| Q |
127 |
tgaatctgaaccacttaccaccaatttattgggcatggtttcagctttaactagaaatccatttgaatctaggctcaatgaacaactggataaactagaa |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||| || |||||||||||| |
|
|
| T |
6948095 |
tgaatctgaaccacttaccaccaatttattgggcttggtttcagctttaactacaaatccatttgaatgtaggctcaatgaacagctcgataaactagaa |
6947996 |
T |
|
| Q |
227 |
cttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtcagttggaaaccttcacaaaggttgtcatcta |
326 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
6947995 |
cttcttgcaaagaaaaagaaagagttgggattgggagaaagtccttgcgctagtaatgaaggcttagtcagttggaaaccttcaaaaagattgtcatcta |
6947896 |
T |
|
| Q |
327 |
cagctctcgtggatgagtcgagcatatatggtagagatgttgataaagaaaaactaataaagtttttacttgcaggcaatgatagtggcaaccatgttcc |
426 |
Q |
| |
|
|||||||| |||||||||| | ||||||||||||||||| |||||| || || |||| ||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
6947895 |
cagctctcatggatgagtcaaccatatatggtagagatgatgataaggacaagttaatcaagtttttacttgcaggcaatgacagtggcaaccaggttcc |
6947796 |
T |
|
| Q |
427 |
aataatcagcgtagtcggttt |
447 |
Q |
| |
|
|||||||||| |||| ||||| |
|
|
| T |
6947795 |
aataatcagcatagtgggttt |
6947775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 447
Target Start/End: Original strand, 6519246 - 6519685
Alignment:
| Q |
8 |
aagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctaccgatgcaa |
107 |
Q |
| |
|
||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6519246 |
aagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctactgatgcaa |
6519345 |
T |
|
| Q |
108 |
tgctaaataatctgaaagctgaatctgaaccacttaccaccaatttattgggcatggtttcagctttaactagaaatccatttgaatctaggctcaatga |
207 |
Q |
| |
|
|| || |||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
6519346 |
tgatatataagttgaaagctgaatctgaaccacttaccaccaatttatttggctgggtttcagctttaactggaaatccatttgaatctaggctcaataa |
6519445 |
T |
|
| Q |
208 |
acaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtcagttggaaacct |
307 |
Q |
| |
|
|| |||||| | ||||||| ||||||| | |||| ||||| | ||||||||| || |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6519446 |
actactggagacactagaatctcttgcacaacaaacgaaaaggctgggattggaagttggtccttgtgctagtaatgaaggcttagtcagttggaaacct |
6519545 |
T |
|
| Q |
308 |
tcacaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgttgataaagaaaaactaataaagtttttacttgcaggcaatg |
407 |
Q |
| |
|
||| || | |||||||||||| |||| ||||||||||| ||| ||| ||||||||||||| |||| ||||||||| | || |||||||||||| |||| |
|
|
| T |
6519546 |
tcaaaacgattgtcatctacatctcttgtggatgagtcaagcttatgtggtagagatgttcataaggaaaaactagtgaaacttttacttgcagacaata |
6519645 |
T |
|
| Q |
408 |
atagtggcaaccatgttccaataatcagcgtagtcggttt |
447 |
Q |
| |
|
||||| ||||| ||||||||||||||| |||| ||||| |
|
|
| T |
6519646 |
ccagtggtaaccaggttccaataatcagcatagtgggttt |
6519685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 5281594 - 5281466
Alignment:
| Q |
10 |
gcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctaccgatgcaatg |
109 |
Q |
| |
|
||||||| |||||| |||||| ||||||||||||||||| |||||||||| ||| ||||| ||||||||| | || ||||||||| |||| || ||| |
|
|
| T |
5281594 |
gcagtacaaaagcacatatgtaaagaagtggcttgatgatcttaaacatgctgtatatgaggcagaccaaattttcgatgagattgctactgacgcacaa |
5281495 |
T |
|
| Q |
110 |
ctaaataatctgaaagctgaatctgaacc |
138 |
Q |
| |
|
|| ||||| ||||||| |||||||||||| |
|
|
| T |
5281494 |
ctgaataagctgaaagatgaatctgaacc |
5281466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 8479979 - 8480045
Alignment:
| Q |
31 |
gaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttct |
97 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
8479979 |
gaagaattgacttgatgaacttaaacatgttgtttatgaagcaaaccaactattacatgagatttct |
8480045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 5299679 - 5299587
Alignment:
| Q |
2 |
gagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatt |
94 |
Q |
| |
|
|||| |||||| ||| ||||| ||| |||||||||||||||| ||| |||||||||||||| ||||||||||| ||||| || ||||||||| |
|
|
| T |
5299679 |
gagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt |
5299587 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 5251117 - 5250981
Alignment:
| Q |
2 |
gagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctaccg |
101 |
Q |
| |
|
||||| ||||| ||| ||||||| || |||||||||||||||||||| ||||||||| || ||||| | ||||| || |||||||||||| | || | |
|
|
| T |
5251117 |
gagatgaagcaataccaaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactg |
5251018 |
T |
|
| Q |
102 |
atgcaatgctaaataatctgaaagctgaatctgaacc |
138 |
Q |
| |
|
||||| || || || ||||||||||||||| |||| |
|
|
| T |
5251017 |
atgcaccactgaagaagctgaaagctgaatctcaacc |
5250981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 4388024 - 4388080
Alignment:
| Q |
2 |
gagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacat |
58 |
Q |
| |
|
||||| ||||||||| ||||||| | |||||||||||||||||||| ||||||||| |
|
|
| T |
4388024 |
gagatgaagcagtaccaaagcatgtccgtgaagaagtggcttgatgatcttaaacat |
4388080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 5269004 - 5268948
Alignment:
| Q |
2 |
gagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacat |
58 |
Q |
| |
|
||||| ||||||| | ||||||| || |||||||||||||||||||| ||||||||| |
|
|
| T |
5269004 |
gagatgaagcagttccaaagcatgtacgtgaagaagtggcttgatgatcttaaacat |
5268948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 365
Target Start/End: Complemental strand, 5250798 - 5250757
Alignment:
| Q |
324 |
ctacagctctcgtggatgagtcgagcatatatggtagagatg |
365 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||||||||||| |
|
|
| T |
5250798 |
ctacagctttggtggatgaatcgagcatatatggtagagatg |
5250757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 375
Target Start/End: Complemental strand, 5299413 - 5299309
Alignment:
| Q |
271 |
ttgtgctaggaatgaaggcttagtcagttggaaaccttcacaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgttgat |
370 |
Q |
| |
|
||||||||| |||||||| |||| |||||||| ||| | |||| ||| || |||| || | |||||||| |||||||||||||| ||||||| ||| |
|
|
| T |
5299413 |
ttgtgctagtaatgaaggtgaagtcggttggaaagctttaaaaagattgccaagtacatctttggtggatgaatcgagcatatatggcagagatggtgac |
5299314 |
T |
|
| Q |
371 |
aaaga |
375 |
Q |
| |
|
||||| |
|
|
| T |
5299313 |
aaaga |
5299309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 423
Target Start/End: Original strand, 8568359 - 8568447
Alignment:
| Q |
335 |
gtggatgagtcgagcatatatggtagagatgttgataaagaaaaactaataaagtttttacttgcaggcaatgatagtggcaaccatgt |
423 |
Q |
| |
|
|||||||| || |||||||||||||||||| ||||||| | ||| |||| || | ||| ||| || ||||||| ||||||||||||| |
|
|
| T |
8568359 |
gtggatgaatcttgcatatatggtagagatgatgataaaaataaaataatcaattatttgcttttagacaatgatggtggcaaccatgt |
8568447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 6554 - 7000
Alignment:
| Q |
1 |
agagataaagcagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctacc |
100 |
Q |
| |
|
|||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6554 |
agagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaggcagaccaactattagatgagatttctact |
6653 |
T |
|
| Q |
101 |
gatgcaatgctaaataatctgaaagctgaatctgaaccacttaccaccaatttattgggcatggtttcagctttaactagaaatccatttgaatctaggc |
200 |
Q |
| |
|
||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
6654 |
gatgcaatgataaataagcaaaaagctgaatctgaaccacttaccaccaatttattgggtttggtttcagctttaactacaaatccatttgaatgtaggc |
6753 |
T |
|
| Q |
201 |
tcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtcagttg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
6754 |
tcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaagatttgagattgggagaaggtcctagtgctagtaatgaaggcttagtcagttg |
6853 |
T |
|
| Q |
301 |
gaaaccttcacaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgttgataaagaaaaactaataaagtttttacttgca |
400 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||| |||| ||||||||||||| | |
|
|
| T |
6854 |
gaaaccttcaaaaaggttgtcatctacagctctcgtggatgagtcaagcatatatggtagggatgttgataaggaaaaaataatcaagtttttacttgaa |
6953 |
T |
|
| Q |
401 |
ggcaatgatagtggcaaccatgttccaataatcagcgtagtcggttt |
447 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||| |||| ||||| |
|
|
| T |
6954 |
ggcaatgacagtggcaaccaggttccaataatcagcatagtgggttt |
7000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 41068416 - 41068482
Alignment:
| Q |
11 |
cagtacgaaagcatatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaa |
79 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41068416 |
cagtaccaaagcatatatgtgaagaattggcttgatgaacttaaacatgttgtt--tgaagcagaccaa |
41068482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 296
Target Start/End: Original strand, 41068553 - 41068617
Alignment:
| Q |
232 |
tgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtca |
296 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
41068553 |
tgcaaagcaaaagaaagagttgggattgggagaaggtcctaacgctagtaatgaaggcttagtca |
41068617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 19936232 - 19936185
Alignment:
| Q |
50 |
cttaaacatgttgtttatgaagcagaccaactattagatgagatttct |
97 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
19936232 |
cttaaacatgttgtttatgaagcaaaccaactattacatgagatttct |
19936185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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