View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14295_low_16 (Length: 432)
Name: NF14295_low_16
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14295_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 16 - 415
Target Start/End: Original strand, 50749143 - 50749522
Alignment:
| Q |
16 |
gaaactgctccgaaagttcctttgcaaacgactcttctaaaccttgtttggttgttccaacccaatcatttgactagcatttagctgcttttccattctc |
115 |
Q |
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| T |
50749143 |
gaaactgctccgaaagttcctttgcaaacgactcttctaaaccttgtttggttgttccaacccaatcatttgactagcatttagctgcttttccattct- |
50749241 |
T |
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| Q |
116 |
ttctatgtgtcatgttttcattggagaaccaaacaattcctgaatacatgggtgtcacatggtgtaatgaatttgtttgtttttgccataaaaatttatc |
215 |
Q |
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| T |
50749242 |
------gtgtcatgttttcattggagaaccaaacaattcctgaatacatgggtgtcacatg--------aatttgtttgtttttgccataaaaatttatc |
50749327 |
T |
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| Q |
216 |
atcattaaatttgacgtccacaaactgtaattcaaatgttaaacaatgttcaatctccctccgatttctttattgcaaccacataaacattgtaaaaata |
315 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50749328 |
atcattaaatttgacgtccacaagttgtaattcaaatgttaaacaatgttcaatctccctccgatttctttattgcaaccacgtaaacattgtaaaaata |
50749427 |
T |
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| Q |
316 |
tttaaaattaaacatgtgaataaactcacaacatcaagttaatagcacgataacatatctataaataatatgataaaattaaaatgat--cggtatatcc |
413 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||| |
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| T |
50749428 |
tttaaaattaaacatgtgaataaactcacaa-------ttaatagcacgataacatatctataaataatatgataaaatcaaaatggtcgcggtatatcc |
50749520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 402
Target Start/End: Complemental strand, 45393305 - 45393277
Alignment:
| Q |
374 |
ctataaataatatgataaaattaaaatga |
402 |
Q |
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| T |
45393305 |
ctataaataatatgataaaattaaaatga |
45393277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Original strand, 31802373 - 31802406
Alignment:
| Q |
370 |
atatctataaataatatgataaaattaaaatgat |
403 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
31802373 |
atatctataaataatatgataaaattaaagtgat |
31802406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 403
Target Start/End: Complemental strand, 5546527 - 5546499
Alignment:
| Q |
375 |
tataaataatatgataaaattaaaatgat |
403 |
Q |
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| T |
5546527 |
tataaataatatgataaaattaaaatgat |
5546499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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