View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14295_low_19 (Length: 375)
Name: NF14295_low_19
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14295_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 363
Target Start/End: Complemental strand, 41804220 - 41803878
Alignment:
| Q |
19 |
catcctcgttaaggtcgtgatcattaacaaataagtttgattatcctttttactttgtcttcaatttctgtagnnnnnnnnnnnnngtccaaatcatttg |
118 |
Q |
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| T |
41804220 |
catcctcgttaaggtcgtgatcattaataagtaagtttgattatcctttttact--gtcttcaatttctgtagaaaaagtaaaaaagtccaaatcatttg |
41804123 |
T |
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| Q |
119 |
ttcgagctatcataaggtgatatacaaaaatcatagcatattttgcatcacgagcttccatcatatgacaattcagaagtcatggtgcatagagattgta |
218 |
Q |
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| T |
41804122 |
ttcgagctaccataaggtgatatacaaaaatcatagcatattttgcatcgcgagcttccatcatatcacaattcagaagtcatggtacatagagattgta |
41804023 |
T |
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| Q |
219 |
cctgctttagctccctggagctgcttttctttatcatacttttcagtatcttcgagcttcttcatgataagattgataacagatagttccttttctcttt |
318 |
Q |
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| T |
41804022 |
cctgctttagctccctggagctgcttttctttatcatacttttcagtatcttcgagcttcttcatgataagattgataacagatagttccttttctcttt |
41803923 |
T |
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| Q |
319 |
ctttggactccatttcaagttctgaaacttggttccgcggcccta |
363 |
Q |
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| T |
41803922 |
ctttggactccatttcaagttctgaaacttggttccgcggcccta |
41803878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 292 - 351
Target Start/End: Complemental strand, 41810603 - 41810544
Alignment:
| Q |
292 |
tgataacagatagttccttttctctttctttggactccatttcaagttctgaaacttggt |
351 |
Q |
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| T |
41810603 |
tgatagcagatagttcctcttctctttctttggacttcatttcaagttctgaaatttggt |
41810544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 292 - 352
Target Start/End: Complemental strand, 41796961 - 41796901
Alignment:
| Q |
292 |
tgataacagatagttccttttctctttctttggactccatttcaagttctgaaacttggtt |
352 |
Q |
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| T |
41796961 |
tgatagcagatagctcctcttctctttctttggacttcatttcaagttctgaaatttggtt |
41796901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 254
Target Start/End: Complemental strand, 41795615 - 41795568
Alignment:
| Q |
207 |
atagagattgtacctgctttagctccctggagctgcttttctttatca |
254 |
Q |
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| T |
41795615 |
atagagattgtacctgttttagctccctggagctgctcttctttatca |
41795568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 41803319 - 41803273
Alignment:
| Q |
208 |
tagagattgtacctgctttagctccctggagctgcttttctttatca |
254 |
Q |
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| T |
41803319 |
tagagattgtaccttttttacctccctggagctgcttttctttatca |
41803273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 41810301 - 41810255
Alignment:
| Q |
208 |
tagagattgtacctgctttagctccctggagctgcttttctttatca |
254 |
Q |
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| T |
41810301 |
tagagattatacctgttttagctccctgaagctgcttttctttatca |
41810255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 41795787 - 41795744
Alignment:
| Q |
48 |
aataagtttgattatcctttttactttgtcttcaatttctgtag |
91 |
Q |
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| T |
41795787 |
aataagtttcaatatccttttgactttgtcttcaatttctgtag |
41795744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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