View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14295_low_2 (Length: 625)
Name: NF14295_low_2
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14295_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 17 - 611
Target Start/End: Complemental strand, 5771251 - 5770654
Alignment:
| Q |
17 |
catagaggaggtaaatccttcaatgagaggtaacatttttataattagaagttattggacaaaatcttcaataatttagttgtgtattcttatctttctt |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5771251 |
catagaggaggtaaatccttcaatgagaggtaacgtttttataattagaagttattggacaaaatctttaataatttagttgtgtattcttatctttctt |
5771152 |
T |
|
| Q |
117 |
aaattggtgatttacatggtttaannnnnnnn-catccattatgagtatagtgtagtattttggttcattggcattgaaataataaccttgctgcatcat |
215 |
Q |
| |
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|||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5771151 |
aaattggtgatttacatgttttaatttttttttcattcattatgagtatagtgtagtattttggttcattggcattgaaataataaccttgctgcatcat |
5771052 |
T |
|
| Q |
216 |
aaataacataaagttgctcatgtactccctaaaaaaggctgatgcatgatgtatctttctgtctcttttgataatttgaatgnnnnnnnnnn--atctct |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
5771051 |
aaataacataaagttgctcatgtactccctagaaaaggctgatgcatgatgtatctttctgtctcttttgataatttgaaagttttttttttttatctct |
5770952 |
T |
|
| Q |
314 |
tttaccatatgttctgtaattatgtacataaattggggttaaactgtgcataaaagttaccgatgtatgatctatctttctttcttactctttttnnnnn |
413 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
5770951 |
tttaccacatgttctgtaattatgtacacaaattggggttaaactgtgcataaaagttactgatgtatgatgtatctttctttcttactctttttaaaaa |
5770852 |
T |
|
| Q |
414 |
nntatgcagaggctaattgtggttcatttgttttcgtgtttatacatcaacacatgcctggtccatttgttttcattgcttttaggagggagatagaata |
513 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5770851 |
aatatgcagagactaattgtggttcatttgttttcgtgtttatacatcaacacatgcctggtccatttgttttcattgcttttaggagggagatagaaaa |
5770752 |
T |
|
| Q |
514 |
aatattagcagggttcaaagttcatgttaatagcactaatttgtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtc |
611 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5770751 |
aatattagcagggttcaaagttcatgttaatagcactaattggtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtc |
5770654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 17 - 611
Target Start/End: Original strand, 33866801 - 33867395
Alignment:
| Q |
17 |
catagaggaggtaaatccttcaatgagaggtaacatttttataattagaagttattggacaaaatcttcaataatttagttgtgtattcttatctttctt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
33866801 |
catagaggaggtaaatccttcaatgagaggtaacatttttataattagaagttattggacaaaatctttaataatttagttgtgtattcttatctttctt |
33866900 |
T |
|
| Q |
117 |
aaattggtgatttacatggtttaannnnnnnn-catccattatgagtatagtgtagtattttggttcattggcattgaaataataaccttgctgcatcat |
215 |
Q |
| |
|
|||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33866901 |
aaattggtgatttacatgttttaatttttttttcattcattatgagtatagtgtagtattttggttcattggcattgaaataataatcttgctgcatcat |
33867000 |
T |
|
| Q |
216 |
aaataacataaagttgctcatgtactccctaaaaaaggctgatgcatgatgtatctttctgtctcttttgataatttgaatgnnnnnnnnnnatctcttt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
33867001 |
aaataacataaagttgctcatgtactccctagaaaaggctgatgcatgatgtatctttctgtctcttttgataatttgaaagttttttttt-atctcttt |
33867099 |
T |
|
| Q |
316 |
taccatatgttctgtaattatgtacataaattggggttaaactgtgcataaaagttaccgatgtatgatctatctttctttcttactctttttnnnnnnn |
415 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
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|
| T |
33867100 |
taccatatgttctgtaattatgtacacaaattggtgttaaactgtgcataaaagttactgatgtatgatgtatctttctttcttactctttttaaaaaaa |
33867199 |
T |
|
| Q |
416 |
tatgcagaggctaattgtggttcatttgttttcgtgtttatacatcaacacatgcctggtccatttgttttcattgcttttaggagggagatagaataaa |
515 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33867200 |
tatgcagagtctaattgtggttcatttgttttcctgtttatacatcaacgcatgcctgatccatttgttttcattgcttttaggagggagatagaataaa |
33867299 |
T |
|
| Q |
516 |
tattagcagggttcaaagttcatgttaatagcactaatttgtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtc |
611 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33867300 |
tattagcagggttcaaagttcatgttaatagcactaattggtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtc |
33867395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 548 - 612
Target Start/End: Original strand, 43904661 - 43904725
Alignment:
| Q |
548 |
actaatttgtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtct |
612 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||| |||| |
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| T |
43904661 |
actaattggtccattttgcatatttgagtatggtaatgttgtaaagttgacttggtttgtagtct |
43904725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 5894466 - 5894390
Alignment:
| Q |
162 |
tatagtgtagtattttggttcattggcattgaaataataaccttgctgcatcataaataacataaagttgctcatgt |
238 |
Q |
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|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
5894466 |
tatagtgtagtattttggttcattggcattgagataataaccttgctccatcataaataacataaacttgctcatgt |
5894390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 229 - 404
Target Start/End: Complemental strand, 5894221 - 5894049
Alignment:
| Q |
229 |
ttgctcatgtactccctaaaaaaggctgatgcatgatgtatctttctgtctcttttgataatttgaatgnnnnnnnnnnatctcttttaccatatgttct |
328 |
Q |
| |
|
||||||||||| || ||| ||||| |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| | |
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|
| T |
5894221 |
ttgctcatgtattcactagaaaagtctgaattatgatgtatctttctgtctcttttgataattggaa---actctttgtatctcttttaccacatgtttt |
5894125 |
T |
|
| Q |
329 |
gtaattatgtacataaattggggttaaactgtgcataaaagttaccgatgtatgatctatctttctttcttactct |
404 |
Q |
| |
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||||||||| ||| ||||| ||||||| |||||||||||||| | || ||||| | ||||||||||| ||||||| |
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|
| T |
5894124 |
gtaattatgcacacaaattagggttaatttgtgcataaaagttgctgacgtatgctgtatctttcttttttactct |
5894049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 5894561 - 5894501
Alignment:
| Q |
82 |
cttcaataatttagttgtgtattctta--tctttcttaaattggtgatttacatggtttaa |
140 |
Q |
| |
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|||||||||||||| |||||||||||| ||| ||||||||||||||| |||| ||||||| |
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|
| T |
5894561 |
cttcaataatttaggtgtgtattcttatctctctcttaaattggtgatatacacggtttaa |
5894501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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