View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14295_low_26 (Length: 325)

Name: NF14295_low_26
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14295_low_26
NF14295_low_26
[»] chr4 (8 HSPs)
chr4 (21-309)||(1547216-1547504)
chr4 (162-309)||(1552181-1552328)
chr4 (272-309)||(12124835-12124872)
chr4 (272-309)||(12126891-12126928)
chr4 (178-222)||(533101-533145)
chr4 (274-309)||(2367689-2367724)
chr4 (181-223)||(6007762-6007804)
chr4 (179-223)||(53759968-53760012)
[»] chr8 (2 HSPs)
chr8 (252-309)||(32152217-32152274)
chr8 (181-221)||(32152308-32152348)
[»] chr7 (5 HSPs)
chr7 (266-303)||(10168817-10168854)
chr7 (266-303)||(10176342-10176379)
chr7 (248-305)||(10615966-10616023)
chr7 (178-215)||(10616209-10616246)
chr7 (268-308)||(15091362-15091402)
[»] chr6 (7 HSPs)
chr6 (252-309)||(7993299-7993356)
chr6 (274-309)||(6437160-6437195)
chr6 (178-216)||(19633436-19633474)
chr6 (268-305)||(6417345-6417382)
chr6 (178-223)||(6417580-6417625)
chr6 (178-223)||(7993099-7993144)
chr6 (178-223)||(14821707-14821752)
[»] chr1 (1 HSPs)
chr1 (268-309)||(19467197-19467238)
[»] chr5 (2 HSPs)
chr5 (178-216)||(29022136-29022174)
chr5 (178-219)||(20477110-20477151)
[»] chr3 (4 HSPs)
chr3 (193-223)||(51763081-51763111)
chr3 (178-215)||(13469172-13469209)
chr3 (248-304)||(13469395-13469451)
chr3 (266-306)||(37579548-37579588)


Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 21 - 309
Target Start/End: Original strand, 1547216 - 1547504
Alignment:
Q  21 atcctaactaacccctgcttggaataacaaccgacgttactgaaagttcaatccaacaccgacatcaacaatgaaaaggaagagaacaaactctctccaa 120  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1547216 atcctaactaacccctgcttggaataacaaccgacgtcactggaagttcaatccaacaccgacatcaacaatgaaaaggaagagaacaaactctctccaa 1547315  T
Q  121 tcttcacaccaacaatcgctttcttcaaaaagaccaagaacagtcactgatagtttgtatttacctgacgagtgttgggaatctatcttcaaattcatca 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1547316 tcttcacaccaacaatcgctttcttcaaaaagaccaagaacagtcactgatagtttgtatttacctgacgagtgttgggaatctatcttcaaattcatca 1547415  T
Q  221 tcatctacggtgacaacatcaacaatcgtcgctacttgaagtcattatcccttgtctccaaacaattcctctccatcaccaaccgtctc 309  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1547416 tcatcgacggtgacaacatcaacaatcgtggctacttgaagtcattatcccttgtctccaaacaattcctctccatcaccaaccgtctc 1547504  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 162 - 309
Target Start/End: Original strand, 1552181 - 1552328
Alignment:
Q  162 agtcactgatagtttgtatttacctgacgagtgttgggaatctatcttcaaattcatcatcatctacggtgacaacatcaacaatcgtcgctacttgaag 261  Q
    |||| ||||| |||| || |||||| | ||||||||||||| ||| |||||||| ||||||||||| || ||  |||||||||| | |||||| ||||||    
T  1552181 agtcgctgatggtttatacttacctcatgagtgttgggaatttattttcaaatttatcatcatctaaggcgatgacatcaacaaacttcgctatttgaag 1552280  T
Q  262 tcattatcccttgtctccaaacaattcctctccatcaccaaccgtctc 309  Q
    || |||||||| ||||||||||| |||| ||| |||||| ||||||||    
T  1552281 tctttatccctcgtctccaaacagttcccctctatcaccgaccgtctc 1552328  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 309
Target Start/End: Complemental strand, 12124872 - 12124835
Alignment:
Q  272 ttgtctccaaacaattcctctccatcaccaaccgtctc 309  Q
    |||||||||||||||| |||||||||||||||||||||    
T  12124872 ttgtctccaaacaatttctctccatcaccaaccgtctc 12124835  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 309
Target Start/End: Complemental strand, 12126928 - 12126891
Alignment:
Q  272 ttgtctccaaacaattcctctccatcaccaaccgtctc 309  Q
    |||||||||||||||| |||||||||||||||||||||    
T  12126928 ttgtctccaaacaatttctctccatcaccaaccgtctc 12126891  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 533145 - 533101
Alignment:
Q  178 tatttacctgacgagtgttgggaatctatcttcaaattcatcatc 222  Q
    |||||||| |||||||||||||||||| ||||||||||| |||||    
T  533145 tatttacccgacgagtgttgggaatctgtcttcaaattcgtcatc 533101  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 309
Target Start/End: Original strand, 2367689 - 2367724
Alignment:
Q  274 gtctccaaacaattcctctccatcaccaaccgtctc 309  Q
    |||||||||||||| |||||||||||||||||||||    
T  2367689 gtctccaaacaatttctctccatcaccaaccgtctc 2367724  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 6007804 - 6007762
Alignment:
Q  181 ttacctgacgagtgttgggaatctatcttcaaattcatcatca 223  Q
    |||||| |||| |||||||||||||||||||||||| ||||||    
T  6007804 ttacctaacgaatgttgggaatctatcttcaaattcctcatca 6007762  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 53759968 - 53760012
Alignment:
Q  179 atttacctgacgagtgttgggaatctatcttcaaattcatcatca 223  Q
    |||||||||| ||||| |||||||||||||||||| || ||||||    
T  53759968 atttacctgatgagtgctgggaatctatcttcaaactcgtcatca 53760012  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 309
Target Start/End: Complemental strand, 32152274 - 32152217
Alignment:
Q  252 ctacttgaagtcattatcccttgtctccaaacaattcctctccatcaccaaccgtctc 309  Q
    ||||||||| ||| | ||||| ||||||||||| |||||||||||||||||| |||||    
T  32152274 ctacttgaattcactctccctcgtctccaaacagttcctctccatcaccaacagtctc 32152217  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 32152348 - 32152308
Alignment:
Q  181 ttacctgacgagtgttgggaatctatcttcaaattcatcat 221  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
T  32152348 ttacctgacgattgtttggaatctatcttcaaattcatcat 32152308  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 303
Target Start/End: Original strand, 10168817 - 10168854
Alignment:
Q  266 tatcccttgtctccaaacaattcctctccatcaccaac 303  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  10168817 tatcccttgtctccaaacagttcctctccatcaccaac 10168854  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 303
Target Start/End: Original strand, 10176342 - 10176379
Alignment:
Q  266 tatcccttgtctccaaacaattcctctccatcaccaac 303  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  10176342 tatcccttgtctccaaacagttcctctccatcaccaac 10176379  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 10616023 - 10615966
Alignment:
Q  248 gtcgctacttgaagtcattatcccttgtctccaaacaattcctctccatcaccaaccg 305  Q
    ||||||||||||| ||  | |||||||||||||| ||| |||||||||||||||||||    
T  10616023 gtcgctacttgaattctctctcccttgtctccaagcaactcctctccatcaccaaccg 10615966  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 10616246 - 10616209
Alignment:
Q  178 tatttacctgacgagtgttgggaatctatcttcaaatt 215  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  10616246 tatttacctgatgagtgttgggaatgtatcttcaaatt 10616209  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 15091362 - 15091402
Alignment:
Q  268 tcccttgtctccaaacaattcctctccatcaccaaccgtct 308  Q
    ||||| ||||||||||| |||||||||||||||||| ||||    
T  15091362 tccctcgtctccaaacagttcctctccatcaccaacagtct 15091402  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 7993299 - 7993356
Alignment:
Q  252 ctacttgaagtcattatcccttgtctccaaacaattcctctccatcaccaaccgtctc 309  Q
    ||||||||| || ||||| || ||||||||||| |||||||||||||||| |||||||    
T  7993299 ctacttgaattctttatctctcgtctccaaacagttcctctccatcaccagccgtctc 7993356  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 309
Target Start/End: Complemental strand, 6437195 - 6437160
Alignment:
Q  274 gtctccaaacaattcctctccatcaccaaccgtctc 309  Q
    ||||||||||| ||||||||||||||||||||||||    
T  6437195 gtctccaaacagttcctctccatcaccaaccgtctc 6437160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 19633474 - 19633436
Alignment:
Q  178 tatttacctgacgagtgttgggaatctatcttcaaattc 216  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  19633474 tatttacctgatgagtgttgggaatctatcttcgaattc 19633436  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 6417382 - 6417345
Alignment:
Q  268 tcccttgtctccaaacaattcctctccatcaccaaccg 305  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  6417382 tcccttgtctccaagcaactcctctccatcaccaaccg 6417345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 6417625 - 6417580
Alignment:
Q  178 tatttacctgacgagtgttgggaatctatcttcaaattcatcatca 223  Q
    |||||||| || ||||||||||||  ||||||||||||||||||||    
T  6417625 tatttacccgatgagtgttgggaacttatcttcaaattcatcatca 6417580  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 7993099 - 7993144
Alignment:
Q  178 tatttacctgacgagtgttgggaatctatcttcaaattcatcatca 223  Q
    ||||||||||| |||||||||||| |||| ||||| ||||||||||    
T  7993099 tatttacctgatgagtgttgggaaactattttcaacttcatcatca 7993144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 14821752 - 14821707
Alignment:
Q  178 tatttacctgacgagtgttgggaatctatcttcaaattcatcatca 223  Q
    |||||||| || || |||||||||||||||||||||||||| ||||    
T  14821752 tatttacccgatgattgttgggaatctatcttcaaattcattatca 14821707  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 19467197 - 19467238
Alignment:
Q  268 tcccttgtctccaaacaattcctctccatcaccaaccgtctc 309  Q
    |||||||||||||||||||||||||| || ||||||||||||    
T  19467197 tcccttgtctccaaacaattcctctcaataaccaaccgtctc 19467238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 29022174 - 29022136
Alignment:
Q  178 tatttacctgacgagtgttgggaatctatcttcaaattc 216  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  29022174 tatttacctgacgagtgttgggaatgcatcttcaaattc 29022136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 20477110 - 20477151
Alignment:
Q  178 tatttacctgacgagtgttgggaatctatcttcaaattcatc 219  Q
    |||||||| ||||| |||||||||||||| ||||||||||||    
T  20477110 tatttacccgacgactgttgggaatctattttcaaattcatc 20477151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 51763081 - 51763111
Alignment:
Q  193 tgttgggaatctatcttcaaattcatcatca 223  Q
    |||||||||||||||||||||||||||||||    
T  51763081 tgttgggaatctatcttcaaattcatcatca 51763111  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 13469172 - 13469209
Alignment:
Q  178 tatttacctgacgagtgttgggaatctatcttcaaatt 215  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  13469172 tatttacctgacgagtgttgggaacgtatcttcaaatt 13469209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 13469395 - 13469451
Alignment:
Q  248 gtcgctacttgaagtcattatcccttgtctccaaacaattcctctccatcaccaacc 304  Q
    ||||||||||||| ||  | |||||||||||||| ||| ||||||| ||||||||||    
T  13469395 gtcgctacttgaattctctctcccttgtctccaagcaactcctctctatcaccaacc 13469451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 37579548 - 37579588
Alignment:
Q  266 tatcccttgtctccaaacaattcctctccatcaccaaccgt 306  Q
    |||||||||| |||||||| |||||||||||||| ||||||    
T  37579548 tatcccttgtttccaaacagttcctctccatcacaaaccgt 37579588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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