View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14295_low_27 (Length: 317)
Name: NF14295_low_27
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14295_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 36903178 - 36903476
Alignment:
| Q |
1 |
ttcgcatagtggcctttgtttctctttcaccgcactcatcatgttcctttttgttctcacatctcaaaaacgaggaaaagattttcgcagggatttgcca |
100 |
Q |
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| T |
36903178 |
ttcgcttagtggcctttgtttctctttcaccgcactcatcatgttcctttttgttctcacatctcaaaaacgagcaaaagattttcgcagggatttgcca |
36903277 |
T |
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| Q |
101 |
ctgaaactttatatcgggctaatttcactttttgtgtcgattgcttctatgattgtttcgttctgcactggctacttttttctgcttagccacaaattta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36903278 |
ctgaaactttatatcgggctaatttcactttttgtgtcgattgcttctatgattgtttcgttctgcactggctacttttttctgcttagccacaaattta |
36903377 |
T |
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| Q |
201 |
agttgattttgttctcaatttctgcagcagcttgtttgcctgtggttttctatggtgctgcgcaaattcctctgtaccattatcttctaacagctattt |
299 |
Q |
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| T |
36903378 |
agttgattttgttctcaatttctgcagcagcttgtttgcctgtggttttctatggtgctgcgcaaattcctctgtaccattatcttctaacagctattt |
36903476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 36883386 - 36883626
Alignment:
| Q |
14 |
ctttgtttctctttcaccgcactcatcatgttcctttttgttctcacatctcaaaaacgaggaaaagattttcgcagggatttgccactgaaactttata |
113 |
Q |
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| T |
36883386 |
ctttgcttctctgttaccggactcatcatgttcctttcaattctcacttctcgtaaacaagccaaagattttcgtcgagatttgccactgaaacttcttc |
36883485 |
T |
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| Q |
114 |
tcgggctaatttcactttttgtgtcgattgcttctatgattgtttcgttctgcactggctacttttttctgcttagccacaaatttaagttgattttgtt |
213 |
Q |
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| T |
36883486 |
ttgggctaagttctctctttgtgtccattgcttcaatgtttatttcattctgcactggacatttttttctgcttagccataattttaagtcgattttgtt |
36883585 |
T |
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| Q |
214 |
ctcaatttctgcagcagcttgtttgcctgtggttttctatg |
254 |
Q |
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| T |
36883586 |
cccaatttatgcagcaacttgtttgcctgtgactttctatg |
36883626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 29 - 254
Target Start/End: Original strand, 36893404 - 36893629
Alignment:
| Q |
29 |
accgcactcatcatgttcctttttgttctcacatctcaaaaacgaggaaaagattttcgcagggatttgccactgaaactttatatcgggctaatttcac |
128 |
Q |
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|||| |||||||||||| |||| | ||||||| ||| ||||| || ||||||||||| | ||||||||| |||||||| | | ||| ||| ||| | |
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| T |
36893404 |
accggactcatcatgtttctttctattctcacttctagaaaacaagccaaagattttcgtcgcgatttgccattgaaacttcttcttgggttaagttctc |
36893503 |
T |
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| Q |
129 |
tttttgtgtcgattgcttctatgattgtttcgttctgcactggctacttttttctgcttagccacaaatttaagttgattttgttctcaatttctgcagc |
228 |
Q |
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| T |
36893504 |
tttttgtgtccattgcttcaatgtttgtttcattctgcactggacatttttttctgcttagccataattttaagtcggttttgttcccaatttacgcagc |
36893603 |
T |
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| Q |
229 |
agcttgtttgcctgtggttttctatg |
254 |
Q |
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| T |
36893604 |
aacttgtttgcctgtgactttctatg |
36893629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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