View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14295_low_28 (Length: 315)
Name: NF14295_low_28
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14295_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 47470028 - 47470312
Alignment:
| Q |
18 |
atcagagcgataaaagctggaataatgaagcctttagttgaattaatggcggattttgattcgaacatggtggataagtcagcgtatgtgatgagcgtgt |
117 |
Q |
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| T |
47470028 |
atcagagcgataaaagctggaataatgaagcctttagttgaattaatggcggattttgattcgaacatggtggataagtcagcgtatgtgatgagcgtgt |
47470127 |
T |
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| Q |
118 |
tggtgacggttacggaggcgagaacggctttggtggaggaaggagggataccggtgttggtggagattgtggaggttgggacgcagagacataaggaaat |
217 |
Q |
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| T |
47470128 |
tggtgacggttacggaggcgagaacggctttggcggaggaaggagggataccggtgttggtggagattgtggaggttgggacgcagagacagaaggaaat |
47470227 |
T |
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| Q |
218 |
tgcggcggcgattttgttgaagatttgtgaagagaatgtgagttatcgtgtaatggtgtgtcgtgaaggtgctattcctcctttg |
302 |
Q |
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| T |
47470228 |
tgcggcggcgattttgttgaagatttgtgaagagaatgtgagttatcgtgtaatggtgtgtcgtgaaggtgctattcctcctttg |
47470312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 21 - 250
Target Start/End: Complemental strand, 5220744 - 5220515
Alignment:
| Q |
21 |
agagcgataaaagctggaataatgaagcctttagttgaattaatggcggattttgattcgaacatggtggataagtcagcgtatgtgatgagcgtgttgg |
120 |
Q |
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| T |
5220744 |
agagcggtgaaagcggggataatgaaggtgttggttgagttgatggcggattttgaatcgaatatggtggataaatcggcttatgttttgagtgtattgg |
5220645 |
T |
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| Q |
121 |
tgacggttacggaggcgagaacggctttggtggaggaaggagggataccggtgttggtggagattgtggaggttgggacgcagagacataaggaaattgc |
220 |
Q |
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| T |
5220644 |
tatcggtgccggaggcgaaggttgcgttggtggaggaaggtggtgtgccggtgttggttgagattgtggaggttggatcgcagagacagaaggaaattgc |
5220545 |
T |
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| Q |
221 |
ggcggcgattttgttgaagatttgtgaaga |
250 |
Q |
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| T |
5220544 |
ggcggttattctgttacagatttgtgaaga |
5220515 |
T |
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