View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14295_low_3 (Length: 592)

Name: NF14295_low_3
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14295_low_3
NF14295_low_3
[»] chr6 (5 HSPs)
chr6 (217-434)||(33010394-33010603)
chr6 (14-155)||(33010663-33010798)
chr6 (475-577)||(33010256-33010358)
chr6 (14-155)||(32683518-32683654)
chr6 (14-155)||(32685228-32685364)
[»] scaffold0022 (1 HSPs)
scaffold0022 (239-370)||(101072-101204)
[»] chr4 (2 HSPs)
chr4 (239-370)||(24091-24223)
chr4 (264-370)||(13914737-13914844)
[»] scaffold0289 (1 HSPs)
scaffold0289 (239-370)||(22132-22264)
[»] scaffold0018 (1 HSPs)
scaffold0018 (239-323)||(67256-67340)
[»] chr8 (13 HSPs)
chr8 (239-370)||(10895839-10895971)
chr8 (239-331)||(287337-287429)
chr8 (327-371)||(15605885-15605929)
chr8 (327-371)||(15614238-15614282)
chr8 (328-369)||(15624450-15624491)
chr8 (328-371)||(15637226-15637269)
chr8 (328-370)||(15605704-15605746)
chr8 (333-371)||(15637048-15637086)
chr8 (328-369)||(15648238-15648279)
chr8 (239-287)||(12167193-12167241)
chr8 (239-287)||(12411621-12411669)
chr8 (328-368)||(15637777-15637817)
chr8 (246-290)||(16291972-16292016)
[»] scaffold1113 (1 HSPs)
scaffold1113 (16-81)||(1336-1403)
[»] scaffold0961 (1 HSPs)
scaffold0961 (16-81)||(2214-2281)
[»] chr2 (2 HSPs)
chr2 (239-303)||(45049537-45049601)
chr2 (239-287)||(5243273-5243321)
[»] chr1 (4 HSPs)
chr1 (264-370)||(8314021-8314128)
chr1 (246-369)||(3832141-3832266)
chr1 (239-287)||(3417366-3417414)
chr1 (249-370)||(11440796-11440916)
[»] chr3 (1 HSPs)
chr3 (246-303)||(6440879-6440936)


Alignment Details
Target: chr6 (Bit Score: 141; Significance: 1e-73; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 217 - 434
Target Start/End: Complemental strand, 33010603 - 33010394
Alignment:
Q  217 cgtactcgtgagcttagctcagttggctgatgaaaaataactgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaa 316  Q
    |||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||  |||||||||||||||||| ||||||||||||||||    
T  33010603 cgtactcgtgagcttagctcagttggctgatgaaaaataaataagtcatgatctattttgattaactaataaaatataattgaatcaacatcaattttaa 33010504  T
Q  317 ttagttggtgaaaaacattaaatgggatgagcaatatgaagatgtcacgtgtacaggtgtacagtgtactgttgatttttaggaagctatttgtttatta 416  Q
    || ||||||||||||||||||||| |||||||||||||||||||||||        |||| || |||||||||||||||||||||||  |||||||||||    
T  33010503 ttggttggtgaaaaacattaaatgagatgagcaatatgaagatgtcac--------gtgtccaatgtactgttgatttttaggaagccgtttgtttatta 33010412  T
Q  417 taatagagatagagatag 434  Q
    ||||||||||||||||||    
T  33010411 taatagagatagagatag 33010394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 14 - 155
Target Start/End: Complemental strand, 33010798 - 33010663
Alignment:
Q  14 aataaaattaggcagttgtgtggagtaagaaaaggaaattgaactatgttccgttttatcctcaagttgtgagtgttagttagatacttgggaagagcca 113  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      || ||||||||||||||||||||    
T  33010798 aataaaattaagcagttgtgtggagtaagaaaaggaaattgaactatgttccgttttatcctcaagttgtg------agatagatacttgggaagagcca 33010705  T
Q  114 agcatgcaaatcttggtctatgcgtgttcggttattatgtac 155  Q
    ||| |||||||||||||||||||||||| |||||||||||||    
T  33010704 agcttgcaaatcttggtctatgcgtgtttggttattatgtac 33010663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 475 - 577
Target Start/End: Complemental strand, 33010358 - 33010256
Alignment:
Q  475 ggatgtctaaatttatcccggtgatcttatttttcaactagtcctgaaaccacgtttactactacttgtataacatgaaaaattatgtagagttgttgat 574  Q
    |||||||  ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33010358 ggatgtccgaatttttcccggtgatcttatttttcaactagccctgaaaccacgtttactactacttgtataacatgaaaaattatgcagagttgttgat 33010259  T
Q  575 ttt 577  Q
    |||    
T  33010258 ttt 33010256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 14 - 155
Target Start/End: Original strand, 32683518 - 32683654
Alignment:
Q  14 aataaaattaggcagttgtgtggagtaagaaaaggaaattgaactatgttccgttttatcctcaagttgtgagtgttagttagatacttgggaagagcca 113  Q
    ||||||||||||||||||||| |||||||||| | ||| |||||||||||| |||||||||| |||||||||||     ||||| |||||||||| ||||    
T  32683518 aataaaattaggcagttgtgtagagtaagaaaggaaaactgaactatgttctgttttatccttaagttgtgagt----tttagacacttgggaagtgcca 32683613  T
Q  114 agcatgcaaatcttggtctatgcgtgttcggttattatgtac 155  Q
    |||  ||||||||| ||||||||||||  |||||||||||||    
T  32683614 agctcgcaaatctt-gtctatgcgtgtctggttattatgtac 32683654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 14 - 155
Target Start/End: Original strand, 32685228 - 32685364
Alignment:
Q  14 aataaaattaggcagttgtgtggagtaagaaaaggaaattgaactatgttccgttttatcctcaagttgtgagtgttagttagatacttgggaagagcca 113  Q
    |||||||||||||||||||||  ||||||||| | ||| |||||||||||| |||||||||| |||||||||||     ||||| |||||||||| ||||    
T  32685228 aataaaattaggcagttgtgtatagtaagaaaggaaaactgaactatgttctgttttatccttaagttgtgagt----tttagacacttgggaagtgcca 32685323  T
Q  114 agcatgcaaatcttggtctatgcgtgttcggttattatgtac 155  Q
    |||  ||||||||| ||||||||||||  |||||||||||||    
T  32685324 agctcgcaaatctt-gtctatgcgtgtctggttattatgtac 32685364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 239 - 370
Target Start/End: Complemental strand, 101204 - 101072
Alignment:
Q  239 ttggctgatgaaaaataactgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaa 337  Q
    |||||| ||||||||||| ||||| |||||| |||||||||||||||||||| |||| |||||||  ||| ||||| ||| |||| ||||||| ||||||    
T  101204 ttggcttatgaaaaataaatgagtcatgatccattttgattggctaataaaaaataaatgagtcatgatctattttgattggttgatgaaaaagcattaa 101105  T
Q  338 atgggatgagcaatatgaagatgtcacgtgtac 370  Q
    ||| || ||  ||| |||||||| || ||||||    
T  101104 atgagaagaaaaatttgaagatgccatgtgtac 101072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 239 - 370
Target Start/End: Original strand, 24091 - 24223
Alignment:
Q  239 ttggctgatgaaaaataactgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaa 337  Q
    |||||| ||||||||||| ||||| || ||| |||||||||||||||||||| |||| |||||||  ||| ||||| ||| |||| ||||||| ||||||    
T  24091 ttggctaatgaaaaataaatgagtcattatccattttgattggctaataaaaaataaatgagtcatgatctattttgattggttgatgaaaaatcattaa 24190  T
Q  338 atgggatgagcaatatgaagatgtcacgtgtac 370  Q
    ||| || ||| ||| |||||||| || ||||||    
T  24191 atgagaagagaaatttgaagatgccatgtgtac 24223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 264 - 370
Target Start/End: Original strand, 13914737 - 13914844
Alignment:
Q  264 atgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaaatgggatgagcaatatgaagatgtc 362  Q
    |||||| |||||||||||||||||||| |||| |||||||  ||| ||||| ||| |||| ||||||| ||||||||| || ||  ||| |||||||| |    
T  13914737 atgatcaattttgattggctaataaaaaataaatgagtcatgatctattttgattggttgatgaaaaagcattaaatgagaagataaatttgaagatgcc 13914836  T
Q  363 acgtgtac 370  Q
    | ||||||    
T  13914837 atgtgtac 13914844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 370
Target Start/End: Original strand, 22132 - 22264
Alignment:
Q  239 ttggctgatgaaaaataactgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaa 337  Q
    |||||| ||||||||||| ||||| ||||| ||||||||||| | ||||||| |||| |||||||  ||  ||||| ||| |||| ||||||| ||||||    
T  22132 ttggctaatgaaaaataaatgagtcatgatttattttgattgacaaataaaaaataaatgagtcatgatatattttgattggttgatgaaaaagcattaa 22231  T
Q  338 atgggatgagcaatatgaagatgtcacgtgtac 370  Q
    ||| |||||| |||  |||||||||| ||||||    
T  22232 atgagatgagaaattagaagatgtcatgtgtac 22264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 67256 - 67340
Alignment:
Q  239 ttggctgatgaaaaataactgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttg 323  Q
    |||||| ||||||||||| |||||||||||| ||||||||| |||||||||| |||| |||||||  ||| ||||||||| ||||    
T  67256 ttggctaatgaaaaataaatgagttatgatccattttgatttgctaataaaaaataaatgagtcatgatccattttaattggttg 67340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 370
Target Start/End: Complemental strand, 10895971 - 10895839
Alignment:
Q  239 ttggctgatgaaaaataactgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggt-gaaaaacattaa 337  Q
    |||||| ||||||||||| ||||| |||||| |||||||||| ||||||||| |||| |||||||  ||| || || ||| |||| |  |||||||||||    
T  10895971 ttggctaatgaaaaataaatgagtcatgatccattttgattgactaataaaaaataaatgagtcatgatccatattgattggttgataaaaaaacattaa 10895872  T
Q  338 atgggatgagcaatatgaagatgtcacgtgtac 370  Q
    ||| |||||| ||| |||||||| || ||||||    
T  10895871 atgagatgagaaatttgaagatggcatgtgtac 10895839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 239 - 331
Target Start/End: Complemental strand, 287429 - 287337
Alignment:
Q  239 ttggctgatgaaaaataactgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa 331  Q
    |||||| || |||||||| ||||| |||||| |||||||||||||||||||| |||| |||||||  ||| ||||| ||| |||| |||||||    
T  287429 ttggctaataaaaaataaatgagtcatgatccattttgattggctaataaaaaataaatgagtcatgatctattttgattggttgatgaaaaa 287337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 15605885 - 15605929
Alignment:
Q  327 aaaaacattaaatgggatgagcaatatgaagatgtcacgtgtaca 371  Q
    |||||||||||||| |||||| |||||||||||||||||||||||    
T  15605885 aaaaacattaaatgagatgagaaatatgaagatgtcacgtgtaca 15605929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 15614238 - 15614282
Alignment:
Q  327 aaaaacattaaatgggatgagcaatatgaagatgtcacgtgtaca 371  Q
    |||||||||||||| |||||| |||||||||||||||||||||||    
T  15614238 aaaaacattaaatgagatgagaaatatgaagatgtcacgtgtaca 15614282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 328 - 369
Target Start/End: Original strand, 15624450 - 15624491
Alignment:
Q  328 aaaacattaaatgggatgagcaatatgaagatgtcacgtgta 369  Q
    ||||||||||||| |||||| |||||||||||||||||||||    
T  15624450 aaaacattaaatgagatgagaaatatgaagatgtcacgtgta 15624491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 371
Target Start/End: Original strand, 15637226 - 15637269
Alignment:
Q  328 aaaacattaaatgggatgagcaatatgaagatgtcacgtgtaca 371  Q
    ||||||||||||| |||||| |||||||||||| ||||||||||    
T  15637226 aaaacattaaatgagatgagaaatatgaagatgacacgtgtaca 15637269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 370
Target Start/End: Original strand, 15605704 - 15605746
Alignment:
Q  328 aaaacattaaatgggatgagcaatatgaagatgtcacgtgtac 370  Q
    ||||||||||||| |||||| ||||||||||| ||||||||||    
T  15605704 aaaacattaaatgagatgagaaatatgaagatatcacgtgtac 15605746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 371
Target Start/End: Original strand, 15637048 - 15637086
Alignment:
Q  333 attaaatgggatgagcaatatgaagatgtcacgtgtaca 371  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  15637048 attaaatgagatgagaaatatgaagatgtcacgtgtaca 15637086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Original strand, 15648238 - 15648279
Alignment:
Q  328 aaaacattaaatgggatgagcaatatgaagatgtcacgtgta 369  Q
    ||||||||||||| |||||| ||||||||||||||| |||||    
T  15648238 aaaacattaaatgagatgagaaatatgaagatgtcaggtgta 15648279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 12167193 - 12167241
Alignment:
Q  239 ttggctgatgaaaaataactgagttatgatctattttgattggctaata 287  Q
    |||||| ||||||||||| ||||| |||||| ||||||||||| |||||    
T  12167193 ttggctcatgaaaaataaatgagtcatgatccattttgattggataata 12167241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 12411621 - 12411669
Alignment:
Q  239 ttggctgatgaaaaataactgagttatgatctattttgattggctaata 287  Q
    |||||| ||||||||||| ||||| |||||| ||||||||||| |||||    
T  12411621 ttggctcatgaaaaataaatgagtcatgatccattttgattggataata 12411669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 15637777 - 15637817
Alignment:
Q  328 aaaacattaaatgggatgagcaatatgaagatgtcacgtgt 368  Q
    ||||||||||||| |||||| ||||||||||| ||||||||    
T  15637777 aaaacattaaatgagatgagaaatatgaagatatcacgtgt 15637817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 16292016 - 16291972
Alignment:
Q  246 atgaaaaataactgagttatgatctattttgattggctaataaaa 290  Q
    ||||||||||| ||||| |||||| ||||||||||| ||||||||    
T  16292016 atgaaaaataaatgagtcatgatccattttgattggataataaaa 16291972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1113 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1113
Description:

Target: scaffold1113; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 1403 - 1336
Alignment:
Q  16 taaaattaggcagttgtgtg--gagtaagaaaaggaaattgaactatgttccgttttatcctcaagtt 81  Q
    ||||||||||||||||||||  ||||||||||  ||||||||| ||||||  ||||||||||||||||    
T  1403 taaaattaggcagttgtgtgtagagtaagaaattgaaattgaattatgttatgttttatcctcaagtt 1336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0961 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0961
Description:

Target: scaffold0961; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 2214 - 2281
Alignment:
Q  16 taaaattaggcagttgtgtg--gagtaagaaaaggaaattgaactatgttccgttttatcctcaagtt 81  Q
    ||||||||||||||||||||  ||||||||||  ||||||||| ||||||  ||||||||||||||||    
T  2214 taaaattaggcagttgtgtgtagagtaagaaattgaaattgaattatgttatgttttatcctcaagtt 2281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 303
Target Start/End: Complemental strand, 45049601 - 45049537
Alignment:
Q  239 ttggctgatgaaaaataactgagttatgatctattttgattggctaataaaatataattgagtca 303  Q
    |||||| ||||||||||| ||||| |||||| ||||||||||||||||||||  ||| |||||||    
T  45049601 ttggctaatgaaaaataaatgagtcatgatccattttgattggctaataaaaattaaatgagtca 45049537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 5243273 - 5243321
Alignment:
Q  239 ttggctgatgaaaaataactgagttatgatctattttgattggctaata 287  Q
    |||||| ||||||||||| ||||| |||||| ||||||||||| |||||    
T  5243273 ttggctcatgaaaaataaatgagtcatgatccattttgattggataata 5243321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 264 - 370
Target Start/End: Original strand, 8314021 - 8314128
Alignment:
Q  264 atgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggt-gaaaaacattaaatgggatgagcaatatgaagatgtc 362  Q
    |||||| |||||||||||||||||||| |||| |||||||  ||| ||||| ||| |||| |  |||||||||||||| ||  || ||| ||||||||||    
T  8314021 atgatcaattttgattggctaataaaaaataaatgagtcatgatctattttgattggttgataaaaaaacattaaatgagaaaagaaatttgaagatgtc 8314120  T
Q  363 acgtgtac 370  Q
    | ||||||    
T  8314121 atgtgtac 8314128  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 246 - 369
Target Start/End: Complemental strand, 3832266 - 3832141
Alignment:
Q  246 atgaaaaataactgagttat-gatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggt-gaaaaacattaaatggga 343  Q
    ||||||||||| ||||| || |||| | ||||||||||||||||||  ||| ||| |||| ||| ||||| ||| |||| | ||||||||||||||| ||    
T  3832266 atgaaaaataaatgagtcattgatccaatttgattggctaataaaaagtaaatgattcaatatctattttgattggttgatagaaaaacattaaatgaga 3832167  T
Q  344 tgagcaatatgaagatgtcacgtgta 369  Q
    |||  |  ||||||||||||| ||||    
T  3832166 tgaagagcatgaagatgtcacatgta 3832141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 3417414 - 3417366
Alignment:
Q  239 ttggctgatgaaaaataactgagttatgatctattttgattggctaata 287  Q
    |||||||||||||||||| ||||| |||||| |||||||||| ||||||    
T  3417414 ttggctgatgaaaaataaatgagtcatgatccattttgattgactaata 3417366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 370
Target Start/End: Complemental strand, 11440916 - 11440796
Alignment:
Q  249 aaaaataactgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaaatgggatgag 347  Q
    |||||||| ||||| |||||| |||||||||| ||||||||| |||| ||||| || ||| ||||| ||| |||  | ||||  ||||||||  ||||||    
T  11440916 aaaaataaatgagtcatgatccattttgattgactaataaaaaataaatgagttaagatccattttgattggttaataaaaatgcattaaattagatgag 11440817  T
Q  348 caatatgaagatgtcacgtgtac 370  Q
      |||||||||||||| ||||||    
T  11440816 --atatgaagatgtcatgtgtac 11440796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 6440879 - 6440936
Alignment:
Q  246 atgaaaaataactgagttatgatctattttgattggctaataaaatataattgagtca 303  Q
    ||||||||||| ||||| |||||  |||||||||||| ||||||| ||||||||||||    
T  6440879 atgaaaaataaatgagtcatgattcattttgattggcaaataaaaaataattgagtca 6440936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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