View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14295_low_34 (Length: 288)
Name: NF14295_low_34
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14295_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 9050921 - 9050646
Alignment:
| Q |
1 |
tttggtgttattatgtatagtaacata-----ttgttctctttattaacaaactctcgtgttaagtttactatgaaacaaaagaatgaggttgtccacga |
95 |
Q |
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| T |
9050921 |
tttggtgttattatggatagtcacatacactattgttctctttattaataaactctcctattaagtttactatgaagcaaacgactgaggttgtccacga |
9050822 |
T |
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| Q |
96 |
attaacaaaaacgattaagcttacctaactttcgtattttt--tatgatggtccaacatttataaacgatttggttgcccatgaatattccnnnnnnnca |
193 |
Q |
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| T |
9050821 |
attaacaaaaacgattaa-cttacctaactttcggattttttatatggtggaccaacatttataaacgatttggttgcccatgaatattcc-ttttttca |
9050724 |
T |
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| Q |
194 |
gttttggctaaattatgtcaataatacaatgtgataagtttggctttattttatttgttaatgtacatgcatttataa |
271 |
Q |
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| T |
9050723 |
gttttggctaaattatgtcaataatacaatgtgataagtttggctttattttatttgttaatgtacatgcatttataa |
9050646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 9052593 - 9052524
Alignment:
| Q |
202 |
taaattatgtcaataatacaatgtgataagtttggctttattttatttgttaatgtacatgcatttataa |
271 |
Q |
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| T |
9052593 |
taaattatgtcaataatacaatgtgataagtttggctttattttattttttaatgtacattcatttataa |
9052524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 9050486 - 9050432
Alignment:
| Q |
216 |
aatacaatgtgataagtttggctttattttatttgttaatgtacatgcatttataa |
271 |
Q |
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| T |
9050486 |
aatacaatgtgataggtttgcctttattttaact-ttaatgtacatgcatttataa |
9050432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 229
Target Start/End: Complemental strand, 9050537 - 9050503
Alignment:
| Q |
195 |
ttttggctaaattatgtcaataatacaatgtgata |
229 |
Q |
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| T |
9050537 |
ttttggctaaattatgtcaataatataatgtgata |
9050503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 9834630 - 9834551
Alignment:
| Q |
26 |
tattgttctctttatt-aacaaactctcgtgttaagtttactatgaaacaaaagaatgaggttgtccacgaattaacaaa |
104 |
Q |
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| T |
9834630 |
tattgttctctttatttaacaaactctcgtgttgggtttactagaagacaagcgaacgaggttgtccacgaattaacaaa |
9834551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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