View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14295_low_36 (Length: 263)
Name: NF14295_low_36
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14295_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 87 - 201
Target Start/End: Complemental strand, 36839709 - 36839598
Alignment:
| Q |
87 |
aagatgttattatactaattatgaactctagaatttgaaagaaatcattggagcctaatcggaagggagaataaattatagtaacttctaaaatcaaata |
186 |
Q |
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| T |
36839709 |
aagatgttattatactaattatgaactctagaatttgaaagaaatcattggagcctaatcggaagggagaataaatta---taacttctaaaatcaaata |
36839613 |
T |
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| Q |
187 |
atctaaaaatcaact |
201 |
Q |
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| T |
36839612 |
atctaaaaatcaact |
36839598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 36839862 - 36839799
Alignment:
| Q |
1 |
atatttggtaattacacttgaataccaataacttagctgttaacaaaataaatatttgcctcga |
64 |
Q |
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| T |
36839862 |
atatttggtaattacacttgaataccaataacttagctgttaacaaaataaatatttggctcga |
36839799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 102
Target Start/End: Complemental strand, 36839762 - 36839723
Alignment:
| Q |
63 |
gaaagtcattagttggtttcatagaagatgttattatact |
102 |
Q |
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| T |
36839762 |
gaaagtcattagctggttgcatagaagatgttattatact |
36839723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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