View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14295_low_44 (Length: 246)
Name: NF14295_low_44
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14295_low_44 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 30844599 - 30844810
Alignment:
| Q |
19 |
attagctgacgttagcaatgataaataatgaattatatcaagtgaacacgaagatcaaaagttgaagtaccataatttgaaggtcccttacaaagcatga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30844599 |
attagctgacgttagcaatgataaataatgaattatatcaagtgaacacgaagatcaaaagttgaagtaccataatttgaaggtcccttacaaagcatga |
30844698 |
T |
|
| Q |
119 |
taacaagcactttaattgttaaataaaaaacctaccactttaattttgactttcaataaactaaaataatcaagtaaatttaatgattatatgcgtgaat |
218 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30844699 |
taaaaagcactttaattgttaaataaaaaacctaccactttaattttgactttcaataaactaaaataatcaagtaaatttaatgattatatgcgtgaat |
30844798 |
T |
|
| Q |
219 |
tcacgccaattt |
230 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30844799 |
tcacgccaattt |
30844810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University