View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14295_low_48 (Length: 236)

Name: NF14295_low_48
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14295_low_48
NF14295_low_48
[»] chr1 (10 HSPs)
chr1 (4-222)||(32190973-32191191)
chr1 (6-72)||(34123148-34123214)
chr1 (11-135)||(31847318-31847442)
chr1 (94-135)||(50441320-50441361)
chr1 (4-86)||(24603022-24603103)
chr1 (6-43)||(9450239-9450276)
chr1 (21-126)||(34062578-34062683)
chr1 (6-52)||(17916174-17916220)
chr1 (18-71)||(25485001-25485054)
chr1 (27-72)||(39126966-39127011)
[»] chr8 (9 HSPs)
chr8 (6-138)||(38924442-38924574)
chr8 (1-65)||(559992-560056)
chr8 (7-71)||(37616274-37616338)
chr8 (1-72)||(32729453-32729525)
chr8 (4-67)||(10340261-10340324)
chr8 (8-135)||(34273042-34273169)
chr8 (18-73)||(21150238-21150293)
chr8 (6-66)||(29204647-29204707)
chr8 (1-43)||(33435404-33435446)
[»] chr5 (4 HSPs)
chr5 (1-72)||(23311797-23311868)
chr5 (21-135)||(35943586-35943700)
chr5 (24-69)||(2584160-2584205)
chr5 (15-52)||(9962911-9962948)
[»] chr4 (4 HSPs)
chr4 (24-135)||(24672769-24672880)
chr4 (6-69)||(40423292-40423355)
chr4 (21-71)||(43115577-43115627)
chr4 (1-42)||(9954558-9954599)
[»] chr7 (7 HSPs)
chr7 (6-72)||(23018473-23018539)
chr7 (6-52)||(48078621-48078667)
chr7 (78-133)||(21346314-21346369)
chr7 (6-52)||(101285-101331)
chr7 (19-65)||(11687825-11687871)
chr7 (10-51)||(35851960-35852001)
chr7 (6-66)||(41195735-41195795)
[»] chr3 (4 HSPs)
chr3 (6-52)||(581049-581095)
chr3 (4-72)||(50670070-50670138)
chr3 (4-37)||(27177362-27177395)
chr3 (7-52)||(52205031-52205076)
[»] chr6 (3 HSPs)
chr6 (4-37)||(22682600-22682633)
chr6 (6-72)||(2608366-2608432)
chr6 (6-52)||(20694597-20694643)
[»] chr2 (5 HSPs)
chr2 (4-72)||(34557301-34557369)
chr2 (21-71)||(12670752-12670802)
chr2 (21-71)||(33710562-33710612)
chr2 (91-136)||(14442017-14442062)
chr2 (1-46)||(15538973-15539018)
[»] scaffold0110 (1 HSPs)
scaffold0110 (6-136)||(31307-31437)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 32191191 - 32190973
Alignment:
Q  4 attttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgagttagtgttaactcataccgagttaaaggaat 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||| |||| |||||    
T  32191191 attttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaatctacgctgaaaaatgtcgagtgagtgttaactcataccgaattaagggaat 32191092  T
Q  104 aagtaattttgaaagggagaaaagcaattttctattttttgttgttgtgagattactaagaataggaaggtacaactaatggagtcctttttgcttgtat 203  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32191091 aagtaattttgaaagggagaaaagcaattttcaattttttgttgttgtgagattactaagaataggaaggtacaactaatggagtcctttttgcttgtat 32190992  T
Q  204 atttttaaatttggtaact 222  Q
    |||||||||||||||||||    
T  32190991 atttttaaatttggtaact 32190973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 34123214 - 34123148
Alignment:
Q  6 tttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgag 72  Q
    |||||||| ||||||||||||| ||||||||| |||||||||||||| | || ||||||||||||||    
T  34123214 tttttaagctggttcaaccgattttaaaagtgtcagcgtgagttaacttccgctgaaaaatgtcgag 34123148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 31847442 - 31847318
Alignment:
Q  11 aagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgagttagtgttaactcataccgagttaaaggaataagtaat 110  Q
    |||| ||||| |||||||||||||||| ||||| ||||||||  ||| ||||||||||||||     |||||||  | | | || |||||||| || |||    
T  31847442 aagtcggttcgaccgatcttaaaagtgtcagcgagagttaactcacgctgaaaaatgtcgagcgtaagttaactattgctgggtcaaaggaatgagcaat 31847343  T
Q  111 tttgaaagggagaaaagcaattttc 135  Q
    |||||||||||||| ||||||||||    
T  31847342 tttgaaagggagaagagcaattttc 31847318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 50441320 - 50441361
Alignment:
Q  94 ttaaaggaataagtaattttgaaagggagaaaagcaattttc 135  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  50441320 ttaaaggaaaaagtaattttgaaagggagaaaagcaattttc 50441361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 24603103 - 24603022
Alignment:
Q  4 attttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgagttagtgttaactca 86  Q
    |||||||||| |||||||||||||||||||||||  | | |||||||||  ||| |||||||||||||||  | |||||||||    
T  24603103 attttttaagctggttcaaccgatcttaaaagtgttatcatgagttaactcacg-tgaaaaatgtcgagtgtgagttaactca 24603022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 9450239 - 9450276
Alignment:
Q  6 tttttaagttggttcaaccgatcttaaaagtgccagcg 43  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  9450239 tttttaagtcggttcaaccgatcttaaaagtgccagcg 9450276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 34062683 - 34062578
Alignment:
Q  21 aaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgagttagtgttaactcataccgagttaaaggaataagtaattttgaaaggg 120  Q
    ||||||| ||||||||| ||||||||||| ||  ||| |||||||||| |||   | |||||||||||| || ||||  ||||||  |||||||| ||||    
T  34062683 aaccgattttaaaagtgtcagcgtgagttcactcacgctgaaaaatgttgagcgtgagttaactcatacagaattaagagaataaacaattttgataggg 34062584  T
Q  121 agaaaa 126  Q
    ||||||    
T  34062583 agaaaa 34062578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 17916220 - 17916174
Alignment:
Q  6 tttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaac 52  Q
    ||||||||| ||||||| |||||||||||||| ||||| ||||||||    
T  17916220 tttttaagtcggttcaatcgatcttaaaagtgtcagcgagagttaac 17916174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 25485001 - 25485054
Alignment:
Q  18 ttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcga 71  Q
    ||||| |||||||||||||| ||||||||||||||  ||| || ||||||||||    
T  25485001 ttcaaacgatcttaaaagtggcagcgtgagttaactcacgctggaaaatgtcga 25485054  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 39126966 - 39127011
Alignment:
Q  27 tcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgag 72  Q
    ||||||||||| ||||||||||||||  ||| ||||||||||||||    
T  39126966 tcttaaaagtgtcagcgtgagttaactcacgctgaaaaatgtcgag 39127011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 6 - 138
Target Start/End: Original strand, 38924442 - 38924574
Alignment:
Q  6 tttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgagttagtgttaactcataccgagttaaaggaataa 105  Q
    ||||||||| |||||||| ||||||||||||| |||||||||||||| | || ||||||||| |||||  | |||||||||| | |||||||   ||| |    
T  38924442 tttttaagtcggttcaactgatcttaaaagtgacagcgtgagttaacttccgctgaaaaatgccgagtgggagttaactcatgctgagttaagcaaatga 38924541  T
Q  106 gtaattttgaaagggagaaaagcaattttctat 138  Q
    |||||||| || ||||||| ||| |||||||||    
T  38924542 gtaattttaaatgggagaagagccattttctat 38924574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 559992 - 560056
Alignment:
Q  1 attattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaa 65  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||  |||||||||||    
T  559992 attattttttaagttggttcaaccgattttaaaattgccagcgtgagttaactcacgttgaaaaa 560056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 37616338 - 37616274
Alignment:
Q  7 ttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcga 71  Q
    ||||||||||| |||||| |||||||||||| ||||||||||||||| ||| |||||||||||||    
T  37616338 ttttaagttggatcaaccaatcttaaaagtgtcagcgtgagttaacccacgctgaaaaatgtcga 37616274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 32729453 - 32729525
Alignment:
Q  1 attattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacct-acgttgaaaaatgtcgag 72  Q
    |||||||||||||| |||||||||||||||||||||| |||||  |||||| ||  |||||||||||||||||    
T  32729453 attattttttaagtcggttcaaccgatcttaaaagtgtcagcgacagttaaactgccgttgaaaaatgtcgag 32729525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 10340261 - 10340324
Alignment:
Q  4 attttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatg 67  Q
    |||||||||||||| ||  ||||||||||||||| ||||||||||||||  |||||||||||||    
T  10340261 attttttaagttgggtcggccgatcttaaaagtgtcagcgtgagttaactcacgttgaaaaatg 10340324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 34273169 - 34273042
Alignment:
Q  8 tttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgagttagtgttaactcataccgagttaaaggaataagt 107  Q
    ||||||| |||||||||||| ||||||||| |||||||||||||   ||| ||||||||| ||||     |||||||||  | ||||||| | ||| ||     
T  34273169 tttaagtcggttcaaccgattttaaaagtgtcagcgtgagttaattcacgctgaaaaatgccgagcagaagttaactcacgctgagttaaggaaatgagc 34273070  T
Q  108 aattttgaaagggagaaaagcaattttc 135  Q
    |||||| |||||||||| ||||||||||    
T  34273069 aattttaaaagggagaagagcaattttc 34273042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 21150238 - 21150293
Alignment:
Q  18 ttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgagt 73  Q
    |||||||||||||||||||| |||||| |||||||  |||||||||||| ||||||    
T  21150238 ttcaaccgatcttaaaagtgtcagcgtaagttaactcacgttgaaaaatatcgagt 21150293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 29204647 - 29204707
Alignment:
Q  6 tttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaat 66  Q
    ||||||||| || ||||| ||||||||||||| |||||| ||||||| |||| ||||||||    
T  29204647 tttttaagtcggatcaactgatcttaaaagtgacagcgtaagttaacttacgctgaaaaat 29204707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 33435446 - 33435404
Alignment:
Q  1 attattttttaagttggttcaaccgatcttaaaagtgccagcg 43  Q
    |||| ||||||||| |||||||||||||||||||||| |||||    
T  33435446 attactttttaagtcggttcaaccgatcttaaaagtgacagcg 33435404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 23311797 - 23311868
Alignment:
Q  1 attattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgag 72  Q
    ||||||||||||||  |||||||| |||||||||||| || ||||||||||| |||||| |||||| |||||    
T  23311797 attattttttaagtcagttcaaccaatcttaaaagtgtcaacgtgagttaacttacgttaaaaaatatcgag 23311868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 35943586 - 35943700
Alignment:
Q  21 aaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgagttagtgttaactcataccgagttaaaggaataagtaattttgaaaggg 120  Q
    |||||||||||||||||| || |||| ||||| |||  |||||||||||||||  |  ||||||||  | || |||| ||||| || |||||||||||||    
T  35943586 aaccgatcttaaaagtgctagtgtgaattaacttacactgaaaaatgtcgagtgtgaattaactcacgcggaattaagggaatgagcaattttgaaaggg 35943685  T
Q  121 agaaaagcaattttc 135  Q
      || ||||||||||    
T  35943686 gaaagagcaattttc 35943700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 2584160 - 2584205
Alignment:
Q  24 cgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtc 69  Q
    |||||||||||||||  |||||||||||| ||||||||||||||||    
T  2584160 cgatcttaaaagtgcatgcgtgagttaacttacgttgaaaaatgtc 2584205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 9962948 - 9962911
Alignment:
Q  15 tggttcaaccgatcttaaaagtgccagcgtgagttaac 52  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  9962948 tggttcaaccgatcttaaaaatgctagcgtgagttaac 9962911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 135
Target Start/End: Original strand, 24672769 - 24672880
Alignment:
Q  24 cgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgagttagtgttaactcataccgagttaaaggaataagtaattttgaaagggaga 123  Q
    |||||| || ||||||| |||||||||||   || ||||||||| |||||  | ||||||||  || |||| |||||||| | |||||||||| ||||||    
T  24672769 cgatctaaatagtgccaacgtgagttaactaccgctgaaaaatgccgagtgtgggttaactcccactgagtcaaaggaatgattaattttgaatgggaga 24672868  T
Q  124 aaagcaattttc 135  Q
    | ||||||||||    
T  24672869 agagcaattttc 24672880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 40423355 - 40423292
Alignment:
Q  6 tttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtc 69  Q
    ||||||||| ||||||||  |||||||||||| |||| ||||||||| | ||||||||||||||    
T  40423355 tttttaagtcggttcaacaaatcttaaaagtgtcagcatgagttaacttccgttgaaaaatgtc 40423292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 43115627 - 43115577
Alignment:
Q  21 aaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcga 71  Q
    ||||||||||||||||| ||| ||||||||||  ||| |||||||||||||    
T  43115627 aaccgatcttaaaagtgtcagtgtgagttaactcacgctgaaaaatgtcga 43115577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 9954558 - 9954599
Alignment:
Q  1 attattttttaagttggttcaaccgatcttaaaagtgccagc 42  Q
    ||||||||||||||||| |||| |||||||||||||| ||||    
T  9954558 attattttttaagttgggtcaatcgatcttaaaagtgacagc 9954599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 23018539 - 23018473
Alignment:
Q  6 tttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgag 72  Q
    ||||||||| |||| |||||||||||||||||||||||| ||||||    |||||||||||| ||||    
T  23018539 tttttaagtcggtttaaccgatcttaaaagtgccagcgtcagttaattgccgttgaaaaatgccgag 23018473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 48078621 - 48078667
Alignment:
Q  6 tttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaac 52  Q
    ||||||||| ||||||||||||||||||||||||| || ||||||||    
T  48078621 tttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaac 48078667  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 21346369 - 21346314
Alignment:
Q  78 gttaactcataccgagttaaaggaataagtaattttgaaagggagaaaagcaattt 133  Q
    |||||||||| | |||||||  |||||||||||||||||| |||||| ||||||||    
T  21346369 gttaactcatgctgagttaagagaataagtaattttgaaaaggagaagagcaattt 21346314  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 101331 - 101285
Alignment:
Q  6 tttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaac 52  Q
    |||||||||  | ||||||||||||||||||| ||||||||||||||    
T  101331 tttttaagtcaggtcaaccgatcttaaaagtgtcagcgtgagttaac 101285  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 11687825 - 11687871
Alignment:
Q  19 tcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaa 65  Q
    ||||||||||||||||||| ||||||||||||||  ||| |||||||    
T  11687825 tcaaccgatcttaaaagtgacagcgtgagttaactcacgctgaaaaa 11687871  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 35852001 - 35851960
Alignment:
Q  10 taagttggttcaaccgatcttaaaagtgccagcgtgagttaa 51  Q
    ||||| |||||||||||||||||||||| ||| |||||||||    
T  35852001 taagtcggttcaaccgatcttaaaagtgtcagtgtgagttaa 35851960  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 41195735 - 41195795
Alignment:
Q  6 tttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaat 66  Q
    |||||||| ||||||||| ||||||||||||| || | ||||||||| | || ||||||||    
T  41195735 tttttaagctggttcaactgatcttaaaagtgtcaacttgagttaacttccgctgaaaaat 41195795  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 581095 - 581049
Alignment:
Q  6 tttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaac 52  Q
    |||||||||  |||||||||||||||||||| |||||||||||||||    
T  581095 tttttaagtctgttcaaccgatcttaaaagtaccagcgtgagttaac 581049  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 50670138 - 50670070
Alignment:
Q  4 attttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgag 72  Q
    |||||||| ||  ||||||||||| ||||||||| |||||| |||||||  ||| ||||||||||||||    
T  50670138 attttttacgtaagttcaaccgattttaaaagtgtcagcgtaagttaactcacgctgaaaaatgtcgag 50670070  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 27177362 - 27177395
Alignment:
Q  4 attttttaagttggttcaaccgatcttaaaagtg 37  Q
    |||||||||||||| |||||||||||||||||||    
T  27177362 attttttaagttgggtcaaccgatcttaaaagtg 27177395  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 52205076 - 52205031
Alignment:
Q  7 ttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaac 52  Q
    |||||||| || ||||||||||||||||||| |||| |||||||||    
T  52205076 ttttaagtcgggtcaaccgatcttaaaagtgtcagcatgagttaac 52205031  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 22682600 - 22682633
Alignment:
Q  4 attttttaagttggttcaaccgatcttaaaagtg 37  Q
    ||||||||||||||||||||||||||||||||||    
T  22682600 attttttaagttggttcaaccgatcttaaaagtg 22682633  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 2608432 - 2608366
Alignment:
Q  6 tttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgag 72  Q
    ||||||||||||||||||| || |||||| ||| ||||||||||||   ||| |||||||| |||||    
T  2608432 tttttaagttggttcaaccaattttaaaaatgctagcgtgagttaaatcacgctgaaaaatatcgag 2608366  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 20694643 - 20694597
Alignment:
Q  6 tttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaac 52  Q
    |||||||||||  |||||| ||||||||||||||| |||||||||||    
T  20694643 tttttaagttgagtcaaccaatcttaaaagtgccaccgtgagttaac 20694597  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 34557369 - 34557301
Alignment:
Q  4 attttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgag 72  Q
    ||||||||| | ||||||| |||||||||||||||  | ||||||||||  ||| ||||||||||||||    
T  34557369 attttttaaatcggttcaatcgatcttaaaagtgctggtgtgagttaactcacgctgaaaaatgtcgag 34557301  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 12670802 - 12670752
Alignment:
Q  21 aaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcga 71  Q
    ||||||||||||||||| |||||||||||||   |||||| ||||||||||    
T  12670802 aaccgatcttaaaagtgtcagcgtgagttaagtcacgttgcaaaatgtcga 12670752  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 33710612 - 33710562
Alignment:
Q  21 aaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcga 71  Q
    ||||||||||||||||| |||||| |||||||  ||| |||||||||||||    
T  33710612 aaccgatcttaaaagtgtcagcgtaagttaactcacgctgaaaaatgtcga 33710562  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 14442062 - 14442017
Alignment:
Q  91 gagttaaaggaataagtaattttgaaagggagaaaagcaattttct 136  Q
    |||||||  |||| |||||||||||||||||||| |||||||||||    
T  14442062 gagttaagagaatgagtaattttgaaagggagaagagcaattttct 14442017  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 15538973 - 15539018
Alignment:
Q  1 attattttttaagttggttcaaccgatcttaaaagtgccagcgtga 46  Q
    |||| ||||||||| ||||||| |||||||||||||| ||||||||    
T  15538973 attactttttaagtcggttcaatcgatcttaaaagtgtcagcgtga 15539018  T

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Target: scaffold0110 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 136
Target Start/End: Complemental strand, 31437 - 31307
Alignment:
Q  6 tttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgagttagtgttaactcataccgagttaaaggaataa 105  Q
    |||||||| |||||||||| ||||||||| ||   | ||||||||||  ||| ||||||||| |||    | |||||||||| | || ||||  |||| |    
T  31437 tttttaagctggttcaaccaatcttaaaaatgtatgtgtgagttaactcacgctgaaaaatgccgaacgtgagttaactcatgctgaattaagagaatga 31338  T
Q  106 gtaattttgaaagggagaaaagcaattttct 136  Q
    | |||||||||||| |||| |||||||||||    
T  31337 gcaattttgaaaggaagaagagcaattttct 31307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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