View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14295_low_49 (Length: 234)

Name: NF14295_low_49
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14295_low_49
NF14295_low_49
[»] chr3 (8 HSPs)
chr3 (19-218)||(24982044-24982243)
chr3 (19-218)||(24497244-24497443)
chr3 (19-218)||(25085036-25085235)
chr3 (19-221)||(24923442-24923644)
chr3 (19-218)||(31825542-31825741)
chr3 (19-212)||(24919877-24920070)
chr3 (19-221)||(21584579-21584781)
chr3 (181-218)||(14858633-14858670)
[»] chr7 (5 HSPs)
chr7 (19-221)||(10575385-10575587)
chr7 (24-210)||(39954838-39955024)
chr7 (19-163)||(354402-354547)
chr7 (19-127)||(10580785-10580893)
chr7 (183-221)||(10580932-10580970)
[»] chr8 (1 HSPs)
chr8 (19-224)||(14261011-14261216)
[»] chr2 (1 HSPs)
chr2 (45-187)||(41027596-41027738)
[»] chr4 (3 HSPs)
chr4 (39-193)||(22898571-22898725)
chr4 (39-193)||(22950239-22950393)
chr4 (24-210)||(53328717-53328903)
[»] chr5 (1 HSPs)
chr5 (39-202)||(26358549-26358712)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 24982044 - 24982243
Alignment:
Q  19 gaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacata 118  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24982044 gaagaggtggtgttaagagaatcagtggtttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacata 24982143  T
Q  119 cactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaaga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24982144 cactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaaga 24982243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 24497443 - 24497244
Alignment:
Q  19 gaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacata 118  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  24497443 gaagaggtggtgttaagagaatcagtggattgatctatgaagaaaccagaggtgtcttgaagatcttcttggaaaatgtgatccgtgatgcagttacata 24497344  T
Q  119 cactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaaga 218  Q
    |||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||    
T  24497343 cactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggttttggaggttgatgaaga 24497244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 25085036 - 25085235
Alignment:
Q  19 gaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacata 118  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25085036 gaagaggtggtgtgaagagaatcagtggtttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacata 25085135  T
Q  119 cactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaaga 218  Q
    |||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||    
T  25085136 cactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacagggaagaaccctctatggttttggaggttgaagaaga 25085235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 24923644 - 24923442
Alignment:
Q  19 gaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacata 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||    
T  24923644 gaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgctgtgacata 24923545  T
Q  119 cactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaaga 218  Q
    |||||||||||| ||||||||||| || || |||||||||||||||||||||||||||||||| ||||||||||||||||| || || |||||||||| |    
T  24923544 cactgagcacgcaaggaggaagacagtgacagccatggatgttgtctatgctttgaagagacagggaagaaccctctatggatttggaggttgaagaata 24923445  T
Q  219 tga 221  Q
    |||    
T  24923444 tga 24923442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 31825741 - 31825542
Alignment:
Q  19 gaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacata 118  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  31825741 gaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaactagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacata 31825642  T
Q  119 cactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaaga 218  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||| |||||    
T  31825641 cactgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggaggttgatgaaga 31825542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 24920070 - 24919877
Alignment:
Q  19 gaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacata 118  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||||    
T  24920070 gaagaggtggtgtgaagagaatcagcggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttagagaatgtcattcgtgatgctgtgacata 24919971  T
Q  119 cactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttga 212  Q
    |||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||| ||||||    
T  24919970 cactgagcacgctaggaggaagacagtgacagccatggatgtcgtctatgctttgaagaggcagggaagaaccctctatggattcggaggttga 24919877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 21584781 - 21584579
Alignment:
Q  19 gaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacata 118  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||  | ||||| |||||||||||||| || |||||||| ||||| ||    
T  21584781 gaagaggtggtgttaagagaatcagtggtttgatttatgaggaaacaagaggagttcttaagattttcttggagaatgtgattcgtgatgcggttacgta 21584682  T
Q  119 cactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaaga 218  Q
    ||||||||| || |||||||||||||| || || ||||||||||| |||||||||||||| ||||||||||| || ||||| ||||| ||||||||||||    
T  21584681 cactgagcatgcaaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgctttatggattcggaggttgaagaaga 21584582  T
Q  219 tga 221  Q
    |||    
T  21584581 tga 21584579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 14858670 - 14858633
Alignment:
Q  181 aaggaagaaccctctatggtttcggtggttgaagaaga 218  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  14858670 aaggaagaaccctctacggttttggtggttgaagaaga 14858633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 10575385 - 10575587
Alignment:
Q  19 gaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacata 118  Q
    ||||||| ||||| || ||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||  | ||||| ||||| ||    
T  10575385 gaagaggaggtgtgaaaagaatcagtggattgatctatgaggaaacaagaggtgtgttgaagatcttcttggagaatgttataagagatgctgttactta 10575484  T
Q  119 cactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaaga 218  Q
    ||||||||| || |||||||| ||||| || || ||||||||||| || ||  | |||||||||||||||||||||||||||||||||||||||||| ||    
T  10575485 cactgagcatgcgaggaggaaaactgtgactgctatggatgttgtttacgcgcttaagagacaaggaagaaccctctatggtttcggtggttgaagatga 10575584  T
Q  219 tga 221  Q
    |||    
T  10575585 tga 10575587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 210
Target Start/End: Complemental strand, 39955024 - 39954838
Alignment:
Q  24 ggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactg 123  Q
    |||||||| ||||||||||| ||| | ||||| ||||| ||  | |||||  | ||||||||  | |||||||| || |||||||| ||||| |||||||    
T  39955024 ggtggtgtgaagagaatcagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgtgattcgtgatgctgttacttacactg 39954925  T
Q  124 agcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggtt 210  Q
    |||| ||||||||||| ||||||||||||||||||||||| |||||| | ||||| || ||||| || ||||| |||||||||||||    
T  39954924 agcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggtttcggtggtt 39954838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 354402 - 354547
Alignment:
Q  19 gaagaggtggtgttaagagaatcagtggtttga-tctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacat 117  Q
    ||||||||||||| ||||| ||||||||||| | ||||||| ||||  ||||| || |||||||| |||||| ||||||  ||  ||||||| ||||| |    
T  354402 gaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttactt 354501  T
Q  118 acactgagcacgctaggaggaagactgttaccgccatggatgttgt 163  Q
    |||||||||| || |||||||||||| | || || |||||||||||    
T  354502 acactgagcatgcaaggaggaagactctgactgctatggatgttgt 354547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 10580785 - 10580893
Alignment:
Q  19 gaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacata 118  Q
    |||||| |||||| ||||| |||||||||||||||||||| ||||  |||||  | |||||||| |||||| |||||   || | |||||| ||||| ||    
T  10580785 gaagagttggtgtgaagaggatcagtggtttgatctatgaggaaataagaggactgttgaagattttcttgcagaataagattcttgatgctgttactta 10580884  T
Q  119 cactgagca 127  Q
    |||||||||    
T  10580885 cactgagca 10580893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 10580932 - 10580970
Alignment:
Q  183 ggaagaaccctctatggtttcggtggttgaagaagatga 221  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  10580932 ggaagaaccctctatggttttggtggatgaagaagatga 10580970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 14261216 - 14261011
Alignment:
Q  19 gaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacata 118  Q
    ||||||| ||||| ||||||||||| || ||||| |||||||||||  | ||||| |||||||| |||||||||||||| ||  | ||||| ||||| ||    
T  14261216 gaagaggaggtgtgaagagaatcagcgggttgatttatgaagaaactcgcggtgtgttgaagattttcttggagaatgtgataagagatgctgttacgta 14261117  T
Q  119 cactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaaga 218  Q
     ||||| || || ||||||||||| ||||| || ||||||||||| ||||| ||||||||||||||||| ||  | ||||||||||| ||||||||||||    
T  14261116 tactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggactttgtatggtttcggaggttgaagaaga 14261017  T
Q  219 tgatga 224  Q
    ||||||    
T  14261016 tgatga 14261011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 187
Target Start/End: Original strand, 41027596 - 41027738
Alignment:
Q  45 ggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgctaggaggaagactg 144  Q
    ||||||||||| ||||| ||  | || || ||||||||||| ||||||||||| || |||||||| ||||| ||||| |||||||||||||| |||||||    
T  41027596 ggtttgatctacgaagagacacgtggcgtgttgaagatctttttggagaatgttattcgtgatgctgttacttacacagagcacgctaggagaaagactg 41027695  T
Q  145 ttaccgccatggatgttgtctatgctttgaagagacaaggaag 187  Q
    |||| || ||||||||||| ||||| |||||||||||||||||    
T  41027696 ttactgctatggatgttgtttatgcattgaagagacaaggaag 41027738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 39 - 193
Target Start/End: Original strand, 22898571 - 22898725
Alignment:
Q  39 atcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgctaggagga 138  Q
    |||||||||||||| ||||| || ||  | || || |||||||| || ||||||||||| ||  | ||||| || || ||||||||||||||||| ||||    
T  22898571 atcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaagga 22898670  T
Q  139 agactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccct 193  Q
    |||| ||||| || |||||||| || |||||  | |||||||| |||||||||||    
T  22898671 agacggttactgctatggatgtggtttatgccctcaagagacagggaagaaccct 22898725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 39 - 193
Target Start/End: Original strand, 22950239 - 22950393
Alignment:
Q  39 atcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgctaggagga 138  Q
    |||||||||||||| ||||| || ||  | || || |||||||| || ||||||||||| ||  | ||||| || || ||||||||||||||||| ||||    
T  22950239 atcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaagga 22950338  T
Q  139 agactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccct 193  Q
    |||| ||||| || |||||||| || |||||  | |||||||| |||||||||||    
T  22950339 agacggttactgctatggatgtggtttatgccctcaagagacagggaagaaccct 22950393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 210
Target Start/End: Original strand, 53328717 - 53328903
Alignment:
Q  24 ggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactg 123  Q
    |||||||| ||| | |||||||| || ||||||||||||||  | || ||  | ||||||||  | |||||||| || |||||||| || |||||||| |    
T  53328717 ggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgctgtcacatacacag 53328816  T
Q  124 agcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggtt 210  Q
    |||| ||| |  | ||||||||||| || ||||||||||| || ||| | ||||| || ||||| || || || |||||||| ||||    
T  53328817 agcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaagaggcagggaaggactctttacggtttcgggggtt 53328903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 202
Target Start/End: Complemental strand, 26358712 - 26358549
Alignment:
Q  39 atcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgctaggagga 138  Q
    ||||||||| ||||||||||||||||  | |||||  | ||||| ||  | |||||||| || |||||||| || || |||||||| || ||| |  | |    
T  26358712 atcagtggtctgatctatgaagaaactcgtggtgttctcaagatatttcttgagaatgttattcgtgatgctgtcacttacactgaacatgctcgtcgca 26358613  T
Q  139 agactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggttt 202  Q
    | || ||||| || ||||||||||| |||||  | ||||| |||||||| ||||| ||||||||    
T  26358612 aaacagttactgctatggatgttgtttatgcgctcaagaggcaaggaaggaccctttatggttt 26358549  T

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