View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14295_low_5 (Length: 554)
Name: NF14295_low_5
Description: NF14295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14295_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 17 - 516
Target Start/End: Original strand, 47121053 - 47121556
Alignment:
| Q |
17 |
aattttactaaccaaagttaatatttacttgcaagttgtcagaatcacatgtgattttgtagaccatgattctaacaaacaaattgtaattatac----c |
112 |
Q |
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| T |
47121053 |
aattttactaaccaaagttaatatttacttgcaagttgtcagaatcacatgtgattttgtagaccatgattctaacaaacaaattgtaattatacatacc |
47121152 |
T |
|
| Q |
113 |
aaacagaactaatttatttaactgagatttgtttatttattatttaggttggggagacagtgaaaaacaatgtaggggactatgtagtggaatgtgtgaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47121153 |
aaacagaactaatttatttaactgagatttgtttatttattatttaggttggggagacagtgaaaaacaatgtaggggactatgtagtggaatgtgtgaa |
47121252 |
T |
|
| Q |
213 |
cagtgttacacttgcagaagtgattcctgaaatatggggaagtagagtggatgattatgatcaaaagctatcgcgcacaaacagcgaattggatgctttg |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47121253 |
tagtgttacacttgcagaagtgattcctgaaatatggggaagtagagtggatgattatgatcaaaagctatcgcgcacaaacagcgaattggatgctttg |
47121352 |
T |
|
| Q |
313 |
ctaagcgcatatactgctgttggagcttgaaaactgaccttgttggatgtgtttgtacatacccaattacccaatcacactccaccaataagcacaaaaa |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||| |
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| T |
47121353 |
ctaagcgcatatactgctgttggagcttgaaaactgaccttgttggatgtgtttgtacaaacccaactacccaataacactccaccaataagcacaaaaa |
47121452 |
T |
|
| Q |
413 |
gacaatgaacaaataatgtggggaatctcatgtgaatagtgttaacaacttaacaagtgtcccaagagaaataaataaataaataaattgtatggtagat |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47121453 |
gacaatgaacaaataatgtggggaatctcatgtgaatagtgttaacaacttaacaagtgtctcaagagaaataaataaataaataaattgtatggtagat |
47121552 |
T |
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| Q |
513 |
atta |
516 |
Q |
| |
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|||| |
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| T |
47121553 |
atta |
47121556 |
T |
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