View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14296_high_11 (Length: 334)

Name: NF14296_high_11
Description: NF14296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14296_high_11
NF14296_high_11
[»] chr5 (31 HSPs)
chr5 (79-324)||(26668179-26668417)
chr5 (79-324)||(26939776-26940014)
chr5 (79-324)||(6154389-6154628)
chr5 (78-254)||(29166929-29167107)
chr5 (73-254)||(37247750-37247933)
chr5 (78-254)||(7452717-7452895)
chr5 (79-324)||(37536894-37537133)
chr5 (79-324)||(37646012-37646252)
chr5 (79-254)||(36424600-36424777)
chr5 (79-324)||(20180112-20180346)
chr5 (79-254)||(36430480-36430655)
chr5 (80-254)||(10759320-10759495)
chr5 (80-324)||(12103954-12104183)
chr5 (79-324)||(39519296-39519524)
chr5 (79-324)||(39523935-39524163)
chr5 (112-254)||(35678888-35679032)
chr5 (162-254)||(40148805-40148897)
chr5 (93-209)||(23757135-23757253)
chr5 (93-209)||(23822591-23822709)
chr5 (158-254)||(17162818-17162917)
chr5 (158-254)||(17159338-17159437)
chr5 (112-253)||(23689034-23689177)
chr5 (112-244)||(4872854-4872988)
chr5 (133-243)||(6511614-6511726)
chr5 (185-254)||(16115294-16115363)
chr5 (79-170)||(40150243-40150334)
chr5 (112-254)||(9725763-9725901)
chr5 (77-130)||(25668154-25668207)
chr5 (281-319)||(16115381-16115419)
chr5 (279-319)||(6511780-6511820)
chr5 (179-243)||(40567661-40567725)
[»] chr1 (24 HSPs)
chr1 (79-324)||(10136226-10136464)
chr1 (47-207)||(8138602-8138760)
chr1 (79-250)||(25844722-25844895)
chr1 (81-254)||(16648591-16648764)
chr1 (79-254)||(26926686-26926854)
chr1 (109-254)||(38622151-38622298)
chr1 (123-254)||(51040522-51040655)
chr1 (112-254)||(16036568-16036712)
chr1 (112-254)||(23191829-23191971)
chr1 (112-254)||(40166902-40167046)
chr1 (158-254)||(11807181-11807279)
chr1 (165-254)||(12260938-12261028)
chr1 (112-324)||(19797984-19798191)
chr1 (132-222)||(46697309-46697399)
chr1 (279-324)||(8138533-8138578)
chr1 (214-318)||(10141000-10141095)
chr1 (116-254)||(39586076-39586212)
chr1 (79-168)||(5100132-5100220)
chr1 (160-254)||(39199805-39199905)
chr1 (79-126)||(39199733-39199780)
chr1 (279-324)||(38621612-38621657)
chr1 (279-319)||(33300412-33300452)
chr1 (214-310)||(47450287-47450375)
chr1 (279-324)||(11807119-11807164)
[»] chr4 (36 HSPs)
chr4 (79-318)||(8694620-8694852)
chr4 (78-254)||(31728322-31728499)
chr4 (78-324)||(31274415-31274654)
chr4 (79-254)||(5270380-5270557)
chr4 (79-324)||(37263520-37263758)
chr4 (79-317)||(16421953-16422184)
chr4 (79-254)||(33467960-33468136)
chr4 (91-254)||(55252606-55252772)
chr4 (79-312)||(13064770-13064994)
chr4 (79-324)||(29349164-29349403)
chr4 (78-250)||(37258821-37258993)
chr4 (78-254)||(5925760-5925929)
chr4 (79-324)||(2820693-2820930)
chr4 (79-315)||(12822867-12823097)
chr4 (82-324)||(51698826-51699065)
chr4 (79-236)||(19907269-19907427)
chr4 (79-324)||(13060366-13060606)
chr4 (94-324)||(32081139-32081361)
chr4 (112-254)||(19107540-19107685)
chr4 (78-254)||(23094071-23094247)
chr4 (112-254)||(19102928-19103072)
chr4 (196-324)||(19907148-19907268)
chr4 (79-254)||(33462315-33462488)
chr4 (115-246)||(8029328-8029457)
chr4 (132-254)||(32220574-32220698)
chr4 (181-314)||(6943684-6943819)
chr4 (117-254)||(27183197-27183326)
chr4 (115-254)||(12875366-12875507)
chr4 (116-324)||(40408842-40409046)
chr4 (78-146)||(6943834-6943902)
chr4 (112-254)||(48275829-48275970)
chr4 (78-318)||(31766779-31766999)
chr4 (116-243)||(47245103-47245230)
chr4 (112-243)||(8028148-8028271)
chr4 (158-254)||(12878864-12878961)
chr4 (279-317)||(39216249-39216287)
[»] chr7 (35 HSPs)
chr7 (75-324)||(26342108-26342348)
chr7 (79-317)||(3046481-3046712)
chr7 (79-250)||(4931189-4931362)
chr7 (79-324)||(12256922-12257160)
chr7 (79-312)||(21672117-21672343)
chr7 (79-324)||(3880868-3881110)
chr7 (109-317)||(42625565-42625772)
chr7 (87-224)||(44508261-44508400)
chr7 (83-210)||(2595776-2595905)
chr7 (115-254)||(13313307-13313448)
chr7 (117-254)||(23247554-23247692)
chr7 (79-252)||(10392044-10392221)
chr7 (179-324)||(12181811-12181951)
chr7 (79-204)||(12802295-12802421)
chr7 (112-254)||(26286146-26286292)
chr7 (119-236)||(23151683-23151804)
chr7 (132-254)||(4580427-4580551)
chr7 (181-254)||(10387410-10387484)
chr7 (279-324)||(27239055-27239100)
chr7 (204-317)||(8269207-8269312)
chr7 (201-254)||(12800352-12800405)
chr7 (186-252)||(9814941-9815008)
chr7 (279-318)||(10392241-10392280)
chr7 (186-252)||(10716866-10716933)
chr7 (112-240)||(30259238-30259368)
chr7 (279-324)||(16373248-16373293)
chr7 (279-324)||(23247891-23247936)
chr7 (279-324)||(27246697-27246742)
chr7 (279-318)||(6590164-6590203)
chr7 (290-324)||(10387513-10387547)
chr7 (279-324)||(2595726-2595771)
chr7 (132-176)||(8269350-8269394)
chr7 (279-319)||(9815027-9815067)
chr7 (279-319)||(10716952-10716992)
chr7 (218-254)||(44508427-44508463)
[»] chr3 (25 HSPs)
chr3 (78-324)||(18472907-18473146)
chr3 (79-324)||(20520861-20521100)
chr3 (79-319)||(14437650-14437881)
chr3 (79-254)||(757321-757497)
chr3 (79-318)||(7570172-7570404)
chr3 (79-250)||(23660446-23660619)
chr3 (79-250)||(23665078-23665251)
chr3 (78-324)||(12970764-12971006)
chr3 (79-254)||(18468174-18468351)
chr3 (95-254)||(55326739-55326899)
chr3 (78-324)||(46964913-46965152)
chr3 (79-254)||(27709893-27710067)
chr3 (112-254)||(3656247-3656391)
chr3 (79-241)||(20175368-20175529)
chr3 (185-324)||(39774890-39775020)
chr3 (112-254)||(55432189-55432330)
chr3 (100-254)||(12964860-12965018)
chr3 (84-151)||(32473106-32473173)
chr3 (73-242)||(3426047-3426215)
chr3 (133-312)||(12111605-12111769)
chr3 (159-238)||(7860686-7860767)
chr3 (180-254)||(29351189-29351263)
chr3 (112-194)||(38891139-38891222)
chr3 (279-324)||(3419893-3419938)
chr3 (279-317)||(55432134-55432172)
[»] chr2 (30 HSPs)
chr2 (79-324)||(17974308-17974546)
chr2 (78-317)||(12797836-12798070)
chr2 (78-254)||(18345378-18345556)
chr2 (79-254)||(17967921-17968098)
chr2 (79-324)||(30651815-30652053)
chr2 (79-254)||(25496341-25496518)
chr2 (79-324)||(19891464-19891700)
chr2 (79-254)||(9184374-9184552)
chr2 (78-254)||(9179682-9179861)
chr2 (79-324)||(25477246-25477485)
chr2 (78-319)||(29678583-29678818)
chr2 (81-254)||(19896912-19897085)
chr2 (79-254)||(12361211-12361384)
chr2 (81-239)||(20101609-20101769)
chr2 (79-317)||(24536973-24537212)
chr2 (78-203)||(1933965-1934092)
chr2 (162-252)||(40846622-40846714)
chr2 (112-254)||(28604048-28604191)
chr2 (158-253)||(15446319-15446416)
chr2 (112-254)||(31329024-31329168)
chr2 (112-254)||(31335745-31335889)
chr2 (112-254)||(42925666-42925808)
chr2 (180-254)||(44630508-44630582)
chr2 (79-138)||(40846478-40846537)
chr2 (158-254)||(25637801-25637898)
chr2 (279-317)||(12002056-12002094)
chr2 (197-254)||(34495183-34495240)
chr2 (279-324)||(20103260-20103305)
chr2 (281-318)||(40846735-40846772)
chr2 (280-324)||(12361152-12361196)
[»] scaffold0054 (2 HSPs)
scaffold0054 (82-318)||(30083-30313)
scaffold0054 (112-252)||(26405-26547)
[»] scaffold0352 (1 HSPs)
scaffold0352 (79-254)||(8071-8248)
[»] chr6 (29 HSPs)
chr6 (79-254)||(17963515-17963692)
chr6 (100-324)||(12405338-12405556)
chr6 (79-254)||(16835118-16835296)
chr6 (78-324)||(11533658-11533897)
chr6 (78-324)||(11559168-11559407)
chr6 (81-324)||(20747256-20747493)
chr6 (79-324)||(11569650-11569887)
chr6 (100-254)||(17600342-17600495)
chr6 (100-254)||(6406838-6406994)
chr6 (81-319)||(19994344-19994575)
chr6 (84-254)||(22694347-22694517)
chr6 (74-319)||(2699066-2699306)
chr6 (136-324)||(25313487-25313671)
chr6 (136-324)||(26200981-26201165)
chr6 (84-254)||(33686606-33686777)
chr6 (79-324)||(11612861-11613100)
chr6 (112-243)||(12689942-12690074)
chr6 (81-241)||(11428933-11429094)
chr6 (112-248)||(12797772-12797914)
chr6 (179-324)||(5856885-5857022)
chr6 (161-254)||(22610473-22610568)
chr6 (116-254)||(19674735-19674874)
chr6 (180-318)||(17914498-17914628)
chr6 (279-324)||(11428866-11428911)
chr6 (81-145)||(5857033-5857096)
chr6 (279-324)||(4156486-4156531)
chr6 (214-252)||(14509941-14509979)
chr6 (78-151)||(29891917-29891991)
chr6 (283-324)||(22694518-22694559)
[»] chr8 (27 HSPs)
chr8 (78-250)||(40124850-40125024)
chr8 (100-317)||(38181260-38181471)
chr8 (93-317)||(2966492-2966710)
chr8 (79-254)||(1808413-1808589)
chr8 (82-319)||(15950528-15950766)
chr8 (78-254)||(44924877-44925055)
chr8 (79-254)||(1909904-1910081)
chr8 (79-254)||(28559074-28559250)
chr8 (87-254)||(26780066-26780234)
chr8 (82-254)||(28564258-28564429)
chr8 (94-254)||(18875357-18875519)
chr8 (158-254)||(33417492-33417590)
chr8 (79-238)||(7002623-7002783)
chr8 (125-229)||(17021243-17021348)
chr8 (125-229)||(17551680-17551785)
chr8 (78-126)||(33417603-33417651)
chr8 (79-254)||(23547568-23547738)
chr8 (279-324)||(19168665-19168710)
chr8 (279-324)||(22714149-22714194)
chr8 (78-139)||(17027165-17027226)
chr8 (78-139)||(17557657-17557718)
chr8 (279-317)||(44925072-44925110)
chr8 (158-242)||(17953183-17953267)
chr8 (165-254)||(24672364-24672453)
chr8 (279-319)||(17027046-17027086)
chr8 (279-319)||(17557538-17557578)
chr8 (180-254)||(33100550-33100623)
[»] scaffold0002 (2 HSPs)
scaffold0002 (79-250)||(5030-5203)
scaffold0002 (79-254)||(442897-443073)
[»] scaffold0690 (1 HSPs)
scaffold0690 (79-324)||(6132-6372)
[»] scaffold0240 (1 HSPs)
scaffold0240 (79-318)||(4877-5108)
[»] scaffold0057 (1 HSPs)
scaffold0057 (82-319)||(36027-36257)
[»] scaffold0011 (1 HSPs)
scaffold0011 (112-239)||(64885-65013)


Alignment Details
Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 79 - 324
Target Start/End: Complemental strand, 26668417 - 26668179
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||| |||| || | ||||||||||||||||||| |    
T  26668417 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaaataattatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 26668318  T
Q  179 --gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattatt 276  Q
      |||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||        ||||||||||||||    
T  26668317 gggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatga--taaaaataatagtaattatt 26668220  T
Q  277 actattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    |       ||||||||| ||||||||||| ||||||||||||| ||||    
T  26668219 a-------ttttattcgagaatatcactttccataaatttagcttatg 26668179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 79 - 324
Target Start/End: Complemental strand, 26940014 - 26939776
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||| |||| || | ||||||||||||||||||| |    
T  26940014 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaaataattatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 26939915  T
Q  179 --gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattatt 276  Q
      |||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||        ||||||||||||||    
T  26939914 gggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatga--taaaaataatagtaattatt 26939817  T
Q  277 actattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    |       ||||||||| ||||||||||| ||||||||||||| ||||    
T  26939816 a-------ttttattcgagaatatcactttccataaatttagcttatg 26939776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 79 - 324
Target Start/End: Original strand, 6154389 - 6154628
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||||||||||||||| ||||| |||||||||||| |||||||||||| |||||||| |||||| |||| || | ||||||||||||||||||| |    
T  6154389 tgttggaacattgatgtgatgttggatgaaaaattggaaaattaaacatcaagtaattatattttgatctaatgttgtgtgaattgaaaaaatagagtgt 6154488  T
Q  179 --gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattatt 276  Q
      |||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||        ||||||||||        
T  6154489 gggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatga--taaaaataatagtaat---- 6154582  T
Q  277 actattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
      ||||||||||||||| |||||||||||  |||||||||||| ||||    
T  6154583 --tattatttttattcgagaatatcactttacataaatttagcttatg 6154628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 78 - 254
Target Start/End: Original strand, 29166929 - 29167107
Alignment:
Q  78 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagta 177  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||| |||| || | |||||||||||||||||||     
T  29166929 ctgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaagtaattatactttgatttaatgttgtgtgaattgaaaaaatagagtg 29167028  T
Q  178 t--gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    |  |||||| ||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||    
T  29167029 tgagggtcctacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatga 29167107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 73 - 254
Target Start/End: Original strand, 37247750 - 37247933
Alignment:
Q  73 caaacctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaata 172  Q
    |||| ||||||||||||||||||||| ||||| ||||||||| ||||||||||| ||| ||||||||||||||| |||| || | |||||||||||||||    
T  37247750 caaaactgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaata 37247849  T
Q  173 gagtat--gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    |||| |  ||||||| |||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||    
T  37247850 gagtgtgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatga 37247933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 78 - 254
Target Start/End: Complemental strand, 7452895 - 7452717
Alignment:
Q  78 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagta 177  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||  || |||||||||| |||| |||| || | |||||||||||||||||||     
T  7452895 ctgttggaacattgatgtgatgttggatgaaaaattggaagattaaacacaaagtaattatactctgatctaatgttgtgtgaattgaaaaaatagagtg 7452796  T
Q  178 tggg--tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    ||||  ||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||    
T  7452795 tgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatga 7452717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 79 - 324
Target Start/End: Original strand, 37536894 - 37537133
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    ||||||||||||||||||||  | || |||||||| |||||||||||||||| |||||||||||||||||||| || | ||||||||||||||||||| |    
T  37536894 tgttggaacattgatgtgatgcttgatgaaaaattagaagattaaacatcaagtaattatactttgatataatgttgtgtgaattgaaaaaatagagtgt 37536993  T
Q  179 -gggtcccacataaaatggaacacacac--attagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattat 275  Q
     |||||||||||||||| ||||||||||  ||||| | ||||||||||| |||||||||||||||||||||||||||||        |||||||||||||    
T  37536994 ggggtcccacataaaatagaacacacacatattagtagtgtttaaattgtggtatttaattttaaatacttgataatga--taaaaataatagtaattat 37537091  T
Q  276 tactattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    ||       ||||||||| ||||||||||| ||||||||||||| ||||    
T  37537092 ta-------ttttattcgagaatatcactttccataaatttagcttatg 37537133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 79 - 324
Target Start/End: Original strand, 37646012 - 37646252
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    ||||||||||||||||||||  | || ||||||||||||||||||||||||| ||||||||||||||| |||| || | ||||||||||||||||||| |    
T  37646012 tgttggaacattgatgtgatgcttgatgaaaaattggaagattaaacatcaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 37646111  T
Q  179 --gggtcccacataaaatggaacacacac--attagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaatta 274  Q
      |||||||||||||||| ||||||||||  ||||  | ||||||||||| |||||||||||||||||||||||||||||        ||||||||||||    
T  37646112 gggggtcccacataaaatagaacacacacatattattagtgtttaaattgtggtatttaattttaaatacttgataatga--taaaaataatagtaatta 37646209  T
Q  275 ttactattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    |||       ||||||||| ||||||||||| ||||||||||||| ||||    
T  37646210 tta-------ttttattcgagaatatcactttccataaatttagcttatg 37646252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 79 - 254
Target Start/End: Complemental strand, 36424777 - 36424600
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||||||||||||||| |||||  |||||||||||||||||||| ||| |||||||||| |||| |||| || | ||||||||||||||||||| |    
T  36424777 tgttggaacattgatgtgatgttggataaaaaattggaagattaaacaccaagtaattatactatgatctaatgttgtgtgaattgaaaaaatagagtgt 36424678  T
Q  179 --gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
      ||||| |||||||||| ||||||||||||||| | || |||||||| |||||||||||||||||||||| ||||||    
T  36424677 gggggtctcacataaaatagaacacacacattagtagtgcttaaattgtggtatttaattttaaatacttggtaatga 36424600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 79 - 324
Target Start/End: Original strand, 20180112 - 20180346
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    ||||||||||||| ||||||  ||| |||||||||||||||||||||| ||| |||||||||||| || |||| || | |||||||| |||||||  | |    
T  20180112 tgttggaacattggtgtgatgctggtagaaaaattggaagattaaacaccaagtaattatactttaatctaatgttgtgtgaattgagaaaataggatgt 20180211  T
Q  179 gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattattac 278  Q
    ||| |||||||||||| ||||||||||||||| | ||||||||||  ||||||||||||||||   ||||||||||        ||||||||||          
T  20180212 gggacccacataaaatagaacacacacattagtagtgtttaaattacggtatttaattttaaa---ttgataatga--taaaaataatagtaat------ 20180300  T
Q  279 tattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    ||||||||||||||| ||||||||||||| ||||||||||| ||||    
T  20180301 tattatttttattcgagaatatcacttcctataaatttagcttatg 20180346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 79 - 254
Target Start/End: Complemental strand, 36430655 - 36430480
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||| |||   |||||||| ||| || |||| || | ||||||||||||||||||| |    
T  36430655 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaatatcg--taattatattttaatctaatgttgtgtgaattgaaaaaatagagtgt 36430558  T
Q  179 ggg--tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    |||  ||||||||||||| ||||||||||||||| | ||||||||||  |||||||||||||||||| ||| ||||||    
T  36430557 gggggtcccacataaaatagaacacacacattagtagtgtttaaattatggtatttaattttaaatatttggtaatga 36430480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 80 - 254
Target Start/End: Original strand, 10759320 - 10759495
Alignment:
Q  80 gttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat- 178  Q
    |||||||||||  |||||| |||||| | |||||||||||||||||| ||| |||||||| |||||| |||| || | |||||| |||||||||||| |     
T  10759320 gttggaacattagtgtgatgttggaaaataaattggaagattaaaca-caagtaattatattttgatttaatgttgtgtgaattaaaaaaatagagtgta 10759418  T
Q  179 -gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
     |||||||||||||||| ||||| ||||||||| | |||||||||||  ||||||||||||||||||||||||||||    
T  10759419 ggggtcccacataaaatagaacagacacattagtagtgtttaaattgcagtatttaattttaaatacttgataatga 10759495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 80 - 324
Target Start/End: Complemental strand, 12104183 - 12103954
Alignment:
Q  80 gttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatg 179  Q
    |||||||||||  |||||| |||||||||||||| |||||| ||||| ||| ||||||||||||||| |||| || | | ||| ||       ||||  |    
T  12104183 gttggaacattagtgtgatgttggaagaaaaattagaagatgaaacaccaagtaattatactttgatctaatgttgtgtaaataga-------gagtggg 12104091  T
Q  180 ggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattattact 279  Q
    ||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||        |||||||| |      |    
T  12104090 ggtcccacataaaatggaacacacacattagtagtgtttaaattgcggtatttaattttaaatacttgataatga--taaaaataatagtagt------t 12103999  T
Q  280 attatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    |||||||||||||| |||||||||||| |||||||||||| ||||    
T  12103998 attatttttattcgagaatatcacttctcataaatttagcttatg 12103954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 79 - 324
Target Start/End: Complemental strand, 39519524 - 39519296
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||||||||||||||| ||||| ||||||||| ||||||||||| ||| ||| ||||||||||| |||| || | ||||||||||||||||||| |    
T  39519524 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaagtaaatatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 39519425  T
Q  179 --gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattatt 276  Q
      ||||||| |||||||| |||||||||||          |||||||| ||||||||||||||||||||||||| |||        ||||||||||||||    
T  39519424 gggggtcccgcataaaatagaacacacaca----------ttaaattgtggtatttaattttaaatacttgatagtga--taaaaataatagtaattatt 39519337  T
Q  277 actattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    |       ||||||||| ||||||||||| ||||||||||||| ||||    
T  39519336 a-------ttttattcgagaatatcactttccataaatttagcttatg 39519296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 79 - 324
Target Start/End: Complemental strand, 39524163 - 39523935
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||||||||||||||| ||||| ||||||||| ||||||||||| ||| ||| ||||||||||| |||| || | ||||||||||||||||||| |    
T  39524163 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaaataaatatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 39524064  T
Q  179 --gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattatt 276  Q
      ||||||  |||||||| |||||||||||          |||||||| ||||||||||||||||||||||||| |||        ||||||||||||||    
T  39524063 gggggtccagcataaaatagaacacacaca----------ttaaattgtggtatttaattttaaatacttgatagtga--taaaaataatagtaattatt 39523976  T
Q  277 actattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    |       ||||||||| ||||||||||| ||||||||||||| ||||    
T  39523975 a-------ttttattcgagaatatcactttccataaatttagcttatg 39523935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 112 - 254
Target Start/End: Original strand, 35678888 - 35679032
Alignment:
Q  112 ttggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat--gggtcccacataaaatggaacacacacatta 209  Q
    ||||||||||||||||||| |||||| |||||||| || | || | ||||||||||||||||||| |  | |||||||||||||| ||||||||||||||    
T  35678888 ttggaagattaaacatcaagtaattaaactttgatctagtgttgtgtgaattgaaaaaatagagtgtaagagtcccacataaaatagaacacacacatta 35678987  T
Q  210 gcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    | | ||||||||| | ||||||| ||||||||||| |||||||||    
T  35678988 gtagtgtttaaatagtggtattttattttaaatacctgataatga 35679032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 162 - 254
Target Start/End: Complemental strand, 40148897 - 40148805
Alignment:
Q  162 ttgaaaaaatagagtatgggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    ||||||||||||||| ||||||||||||||||| ||||| ||||||||| | ||||||||||| |||||||||||||||||||||||||||||    
T  40148897 ttgaaaaaatagagtgtgggtcccacataaaatagaacaaacacattagtagtgtttaaattgcggtatttaattttaaatacttgataatga 40148805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 23757135 - 23757253
Alignment:
Q  93 tgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat--gggtcccacata 190  Q
    |||||| ||||||||||||||||||||||||||| ||| ||||||||||| ||| |||| || | ||||||||||||||||||| |  |||||||||| |    
T  23757135 tgtgatgttggaagaaaaattggaagattaaacaccaagtaattatacttagatttaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacaca 23757234  T
Q  191 aaatggaacacacacatta 209  Q
    |||| ||||||||||||||    
T  23757235 aaatagaacacacacatta 23757253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 23822591 - 23822709
Alignment:
Q  93 tgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat--gggtcccacata 190  Q
    |||||| ||||||||||||||||||||||||||| ||| ||||||||||| ||| |||| || | ||||||||||||||||||| |  |||||||||| |    
T  23822591 tgtgatgttggaagaaaaattggaagattaaacaccaagtaattatacttagatttaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacaca 23822690  T
Q  191 aaatggaacacacacatta 209  Q
    |||| ||||||||||||||    
T  23822691 aaatagaacacacacatta 23822709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 254
Target Start/End: Complemental strand, 17162917 - 17162818
Alignment:
Q  158 tgaattgaaaaaatagagtatggg--tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaa-ttttaaatacttgataatga 254  Q
    ||||||||||||||||| | ||||  ||||||||||||| |||||||||||||||   ||||||||||||||||||||| |||||||||| |||||||||    
T  17162917 tgaattgaaaaaatagaatgtgggagtcccacataaaatagaacacacacattagtggtgtttaaattgaggtatttaatttttaaatacctgataatga 17162818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 158 - 254
Target Start/End: Complemental strand, 17159437 - 17159338
Alignment:
Q  158 tgaattgaaaaaatagagtatgggt--cccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaa-ttttaaatacttgataatga 254  Q
    ||||||||||||||||| | |||||  |||||||||||| ||| ||||||||||| | ||||| ||||||||||||||| |||||||||| |||||||||    
T  17159437 tgaattgaaaaaatagaatgtgggtgtcccacataaaatagaagacacacattagtagtgttttaattgaggtatttaatttttaaatacctgataatga 17159338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 112 - 253
Target Start/End: Complemental strand, 23689177 - 23689034
Alignment:
Q  112 ttggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatggg--tcccacataaaatggaacacacacatta 209  Q
    ||||||||||||||| |||  ||||| |||||||| || |  | | || ||||||||||| |||| ||||  ||||||||||||| |||||||||||||     
T  23689177 ttggaagattaaacaccaaacaattagactttgatctagtgatttgtggattgaaaaaattgagtgtggggatcccacataaaatagaacacacacattc 23689078  T
Q  210 gcaatgtttaaattgaggtatttaattttaaatacttgataatg 253  Q
    | | |||| |||||| ||||||||||||||||||| | ||||||    
T  23689077 gtagtgttaaaattgtggtatttaattttaaataccttataatg 23689034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 244
Target Start/End: Complemental strand, 4872988 - 4872854
Alignment:
Q  112 ttggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatggg--tcccacataaaatggaacacacacatta 209  Q
    ||||||||||||||| ||| | |||| |||||||| || | || | ||||||||||||||||||| ||||  | ||| ||||||| ||||||||||| ||    
T  4872988 ttggaagattaaacaccaaattattaaactttgatttagtgttgtgtgaattgaaaaaatagagtgtgggggttccatataaaatagaacacacacaata 4872889  T
Q  210 gcaatgtttaaattgaggtatttaattttaaatac 244  Q
    | | ||||||||| | | |||||||||||||||||    
T  4872888 gtagtgtttaaatagtgatatttaattttaaatac 4872854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 6511614 - 6511726
Alignment:
Q  133 aattatactttgatataatattatctgaattgaaaaaatagagtatggg--tcccacataaaatggaacacacacattagcaatgtttaaattgaggtat 230  Q
    ||||||| |||||| |||| || | ||||||||||||||  ||| ||||  ||||||||||||| |||| |||||||||| | |||||||||||  ||||    
T  6511614 aattatattttgatctaatgttgtgtgaattgaaaaaattaagtgtgggagtcccacataaaatagaactcacacattagtagtgtttaaattgcagtat 6511713  T
Q  231 ttaattttaaata 243  Q
    |||||||||||||    
T  6511714 ttaattttaaata 6511726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 16115294 - 16115363
Alignment:
Q  185 cacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    ||||||||||| |||||||||||||| ||||||||||||  ||| |||||||||||||||||| ||||||    
T  16115294 cacataaaatgaaacacacacattagtaatgtttaaattacggtgtttaattttaaatacttgctaatga 16115363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 40150334 - 40150243
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaa 170  Q
    ||||||||||||  |||||| ||| || | |||||||||||||||||| ||| ||||||||||||||| |||| || | |||||||||||||    
T  40150334 tgttggaacattagtgtgatgttgaaaaataaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaa 40150243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 254
Target Start/End: Original strand, 9725763 - 9725901
Alignment:
Q  112 ttggaagattaaacatcaactaattatactttgatataatattatctgaattg-aaaaaatagagtatgg--gtcccacataaaatggaacacacacatt 208  Q
    ||||||||||||||| ||| | |||| ||||||||||| | || | ||||||| |||||||||||| |||  |||||||||||||| |||||||||        
T  9725763 ttggaagattaaacaccaagttattaaactttgatatagtgttgtgtgaattgaaaaaaatagagtgtggatgtcccacataaaatagaacacaca---- 9725858  T
Q  209 agcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
       | ||||||||| | |||||||||||||||||||  ||||||||    
T  9725859 ---agtgtttaaatagtggtatttaattttaaataccggataatga 9725901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 25668154 - 25668207
Alignment:
Q  77 cctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaa 130  Q
    ||||||||||||||| |||  | |||||||||||||||||||||||||||||||    
T  25668154 cctgttggaacattggtgttgtgttggaagaaaaattggaagattaaacatcaa 25668207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 319
Target Start/End: Original strand, 16115381 - 16115419
Alignment:
Q  281 ttatttttattcgtgaatatcacttcccataaatttagc 319  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  16115381 ttatttatattcgtggatatcacttcccataaatttagc 16115419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 319
Target Start/End: Original strand, 6511780 - 6511820
Alignment:
Q  279 tattatttttattcgtgaatatcacttcccataaatttagc 319  Q
    ||||||||||||| | ||||||||||||| |||||||||||    
T  6511780 tattatttttatttgagaatatcacttcctataaatttagc 6511820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 40567661 - 40567725
Alignment:
Q  179 gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaata 243  Q
    |||| ||| |||||||  ||||||||| |||| | || |||||||| ||||||||||||||||||    
T  40567661 gggtaccatataaaataaaacacacacgttagtagtgattaaattgtggtatttaattttaaata 40567725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 79 - 324
Target Start/End: Complemental strand, 10136464 - 10136226
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||| |||| || | ||||||||||||||||||| |    
T  10136464 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 10136365  T
Q  179 --gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattatt 276  Q
      |||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||        ||||||||||||||    
T  10136364 gggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatga--taaaaataatagtaattatt 10136267  T
Q  277 actattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    |       ||||||||| ||||||||||| ||||||||||||| ||||    
T  10136266 a-------ttttattcgagaatatcactttccataaatttagcttatg 10136226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 47 - 207
Target Start/End: Complemental strand, 8138760 - 8138602
Alignment:
Q  47 cgctacacacatcagaagccataaagcaaacctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgat 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    || |||||||||||||||    
T  8138760 cgctacacacatcagaagccataaagcaaacctgttggaacattgatgtgatcttggaagaaaaattggaagattaaa---taagtaattatactttgat 8138664  T
Q  147 ataatattatctgaattgaaaaaatagagtat-gggtcccacataaaatggaacacacacat 207  Q
    |||||||| | ||||||||||||||||||||| ||||| |||||||||| ||||||||||||    
T  8138663 ataatattgtgtgaattgaaaaaatagagtatcgggtcacacataaaatagaacacacacat 8138602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 79 - 250
Target Start/End: Complemental strand, 25844895 - 25844722
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||||||||||||||| ||||| ||||||||| ||||||||||| ||| ||||||||||||||| |||| || | ||||||||||||||||||| |    
T  25844895 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 25844796  T
Q  179 --gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgata 250  Q
      ||||||| |||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||    
T  25844795 gggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgata 25844722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 81 - 254
Target Start/End: Original strand, 16648591 - 16648764
Alignment:
Q  81 ttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat-- 178  Q
    ||||||||||  |||||| |||||| | ||||| ||||||||||||     ||||||||||||||| |||| || | | ||||||||||||||||| |      
T  16648591 ttggaacattagtgtgattttggaaaataaattagaagattaaacacg---taattatactttgatctaatgttgtgtaaattgaaaaaatagagtgtag 16648687  T
Q  179 -gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
     |||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||    
T  16648688 ggggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatacttgataatga 16648764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 79 - 254
Target Start/End: Original strand, 26926686 - 26926854
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| |||| || | ||||||||        |||      
T  26926686 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaactaattatactttgatttaatgttgtgtgaattga--------agt-g 26926776  T
Q  179 gggtcccacataaaatggaacacacacattagcaatg-tttaaattgaggtatttaa-ttttaaatacttgataatga 254  Q
    || ||||||||||||| ||||||||||||||| | || ||||||||| ||||||||| ||||||||||||||||||||    
T  26926777 ggatcccacataaaatagaacacacacattagtagtgttttaaattgtggtatttaatttttaaatacttgataatga 26926854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 109 - 254
Target Start/End: Complemental strand, 38622298 - 38622151
Alignment:
Q  109 aaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatgg--gtcccacataaaatggaacacacaca 206  Q
    |||||||||||||||| ||||| ||||||||||||||| |||| || | ||||||||||||||||||| |||  |||||||||||||| |||| |||| |    
T  38622298 aaattggaagattaaaaatcaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccacataaaatagaactcacata 38622199  T
Q  207 ttagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    |||| | |||||||| ||  |||||| ||||| |||||||||||||||    
T  38622198 ttagtagtgtttaaaatgcagtatttgattttgaatacttgataatga 38622151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 123 - 254
Target Start/End: Original strand, 51040522 - 51040655
Alignment:
Q  123 aacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatggg--tcccacataaaatggaacacacacattagcaatgtttaa 220  Q
    |||| ||| ||||||||||||||| |||| || | ||||||||||||||| ||| ||||  |||||||| |||| ||||||||||||||| | |||||||    
T  51040522 aacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaataaagtgtgggagtcccacatgaaatagaacacacacattagtagtgtttaa 51040621  T
Q  221 attgaggtatttaattttaaatacttgataatga 254  Q
    |||| | |||||||||||||||||||||||||||    
T  51040622 attgtgttatttaattttaaatacttgataatga 51040655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 112 - 254
Target Start/End: Complemental strand, 16036712 - 16036568
Alignment:
Q  112 ttggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatgg--gtcccacataaaatggaacacacacatta 209  Q
    ||||||||||||||| ||| ||| || |||||||| || | || | ||||||||||||||||||| |||  |||||||||||||| ||||||||||||||    
T  16036712 ttggaagattaaacaccaagtaactaaactttgatctagtgttgtgtgaattgaaaaaatagagtgtggaggtcccacataaaatagaacacacacatta 16036613  T
Q  210 gcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    | | ||||||||| | ||||||||| ||||||||| |||||||||    
T  16036612 gtagtgtttaaatagtggtatttaaatttaaatacctgataatga 16036568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 112 - 254
Target Start/End: Original strand, 23191829 - 23191971
Alignment:
Q  112 ttggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatgggtcccacataaaatggaacacacacattagc 211  Q
    ||||||||||||||| ||| | |||| |||||||| || | || | ||||||||||||||||||| ||||   |||||||||| |||||||||||||||     
T  23191829 ttggaagattaaacaccaagttattaaactttgatctagtgttgtgtgaattgaaaaaatagagtgtgggggtcacataaaatagaacacacacattagt 23191928  T
Q  212 aatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    | ||||||| | | ||||||||||||||||||| |||||||||    
T  23191929 agtgtttaagtagtggtatttaattttaaatacctgataatga 23191971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 254
Target Start/End: Complemental strand, 40167046 - 40166902
Alignment:
Q  112 ttggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaataga--gtatgggtcccacataaaatggaacacacacatta 209  Q
    ||||||||||||||| ||| | |||| |||||||| || |||| | |||||||||||||||||  ||| |||||||| ||||||| ||| |||||||| |    
T  40167046 ttggaagattaaacaccaagttattaaactttgatctagtattgtgtgaattgaaaaaatagaatgtaggggtcccaaataaaatagaagacacacatca 40166947  T
Q  210 gcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    | | ||||||||  | ||||||||||||||||||| |||||||||    
T  40166946 gtagtgtttaaacagtggtatttaattttaaatacctgataatga 40166902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 158 - 254
Target Start/End: Complemental strand, 11807279 - 11807181
Alignment:
Q  158 tgaattgaaaaaatagagtatggg--tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    |||||||||||||||||||  ||   | ||||||||||| ||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||    
T  11807279 tgaattgaaaaaatagagtgcggagattccacataaaatagaacacacacattagcagtgtttaaattgtggtatttaaatttaaatacttgataatga 11807181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 165 - 254
Target Start/End: Complemental strand, 12261028 - 12260938
Alignment:
Q  165 aaaaaatagagtatggg-tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    |||||||||||| |||| ||||||||||||| |||||||| |||||| | ||||||||| | |||||||||||||||||||||||||||||    
T  12261028 aaaaaatagagtgtggggtcccacataaaatagaacacactcattagtagtgtttaaatagtggtatttaattttaaatacttgataatga 12260938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 112 - 324
Target Start/End: Original strand, 19797984 - 19798191
Alignment:
Q  112 ttggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaa-tagagtatggg---tcccacataaaatggaacacacacat 207  Q
    |||||| |||||| | ||| |||||||| |||||| |||| || | ||||||||||||| || ||| ||||   ||||||||||||| |||| | || ||    
T  19797984 ttggaaaattaaataccaagtaattata-tttgatctaatgttgtgtgaattgaaaaaaataaagtgtggggggtcccacataaaatagaactcgcatat 19798082  T
Q  208 tagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattattactattatttttattcgtgaatatcacttcc 307  Q
    ||| | ||||||||||| |||||||||||||||||||||||||||||        ||||||||||       |||||||||||| | |||||||||||||    
T  19798083 tagtagtgtttaaattgcggtatttaattttaaatacttgataatga--taaaaataatagtaat------aattatttttatttgagaatatcacttcc 19798174  T
Q  308 cataaatttagcctatg 324  Q
    |||||||||||| ||||    
T  19798175 cataaatttagcttatg 19798191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 132 - 222
Target Start/End: Complemental strand, 46697399 - 46697309
Alignment:
Q  132 taattatactttgatataatattatctgaattgaaaaaatagagtatgggtcccacataaaatggaacacacacattagcaatgtttaaat 222  Q
    |||||| |||||||| || | || | |||||||||||||||||||||||||||||||||||||  |||||| ||||||| |||||||||||    
T  46697399 taattagactttgatttagtgttgtgtgaattgaaaaaatagagtatgggtcccacataaaatataacacatacattagtaatgtttaaat 46697309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 8138578 - 8138533
Alignment:
Q  279 tattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  8138578 tattatttttattcgtgaatatcacttcccataaatttagcttatg 8138533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 214 - 318
Target Start/End: Complemental strand, 10141095 - 10141000
Alignment:
Q  214 tgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattattactattatttttattcgtgaatatcacttcccataaa 313  Q
    ||||||||||| |||||||||||||||||||||||||||||        |||||||||||||||       ||||||||| |||||||||||||||||||    
T  10141095 tgtttaaattgtggtatttaattttaaatacttgataatga--taaaaataatagtaattatta-------ttttattcgagaatatcacttcccataaa 10141005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 254
Target Start/End: Original strand, 39586076 - 39586212
Alignment:
Q  116 aagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatg--ggtcccacataaaatggaacacacacattagcaa 213  Q
    ||||||||| ||||| | |||| ||||||||||| |||| | | ||||||||||||||||| ||  ||||||||||||||| ||  ||| ||||||   |    
T  39586076 aagattaaagatcaagttattaaactttgatatagtattgtgt-aattgaaaaaatagagtgtggaggtcccacataaaataga--acaaacatta-ata 39586171  T
Q  214 tgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    ||||||||| | | ||||||||||||||||| |||||||||    
T  39586172 tgtttaaatagtgatatttaattttaaatacctgataatga 39586212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 168
Target Start/End: Original strand, 5100132 - 5100220
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaa 168  Q
    ||||| ||||||  |||||| |||||| | |||||||||||||||||| ||| |||||||||||| || |||| |||| |||||||||||    
T  5100132 tgttgtaacattagtgtgatgttggaaaataaattggaagattaaaca-caagtaattatactttaatctaatgttatgtgaattgaaaa 5100220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 160 - 254
Target Start/End: Original strand, 39199805 - 39199905
Alignment:
Q  160 aattgaaaaaatagagtatgg--gtcccacataaaatggaacacacacattagca----atgtttaaattgaggtatttaattttaaatacttgataatg 253  Q
    ||||||||||||||||| |||  |||||||||||||| ||||||||||||||  |     |||||||||||  ||||||| |||||||||||| ||||||    
T  39199805 aattgaaaaaatagagtgtggaggtcccacataaaatagaacacacacattaatagtgtgtgtttaaattgcagtatttacttttaaatacttaataatg 39199904  T
Q  254 a 254  Q
    |    
T  39199905 a 39199905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 39199733 - 39199780
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 126  Q
    ||||||||||||| |||||| | |||||||||||||||||||||||||    
T  39199733 tgttggaacattggtgtgatgtgggaagaaaaattggaagattaaaca 39199780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 38621657 - 38621612
Alignment:
Q  279 tattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    ||||||||||||| | ||||||||||||||||||||||||| ||||    
T  38621657 tattatttttatttgagaatatcacttcccataaatttagcttatg 38621612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 319
Target Start/End: Original strand, 33300412 - 33300452
Alignment:
Q  279 tattatttttattcgtgaatatcacttcccataaatttagc 319  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  33300412 tattatttttattcgtgaatatcaattctcataaatttagc 33300452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 310
Target Start/End: Original strand, 47450287 - 47450375
Alignment:
Q  214 tgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattattactattatttttattcgtgaatatcacttcccat 310  Q
    |||||||| || | |||||||||||||||||||||||||||        ||| | |||| |||| ||||||||||||||| ||||||||||| ||||    
T  47450287 tgtttaaactgcgttatttaattttaaatacttgataatga--------taaaaataataattattattatttttattcgagaatatcactttccat 47450375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 11807164 - 11807119
Alignment:
Q  279 tattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    ||||||||||||||  |||||||| |||||||||||||||| ||||    
T  11807164 tattatttttattccggaatatcatttcccataaatttagcttatg 11807119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 79 - 318
Target Start/End: Complemental strand, 8694852 - 8694620
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||| |||| || | ||||||||||||||||||| |    
T  8694852 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 8694753  T
Q  179 --gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattatt 276  Q
      |||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||        ||||||||||||||    
T  8694752 gggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatga--taaaaataatagtaattatt 8694655  T
Q  277 actattatttttattcgtgaatatcacttcccataaatttag 318  Q
    |       ||||||||| ||||||||||| ||||||||||||    
T  8694654 a-------ttttattcgagaatatcactttccataaatttag 8694620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 78 - 254
Target Start/End: Original strand, 31728322 - 31728499
Alignment:
Q  78 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagta 177  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| |||||||| |||||| |||| || | |||||||||||||||||||     
T  31728322 ctgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaagtaattataatttgatctaatgttgtgtgaattgaaaaaatagagtg 31728421  T
Q  178 t-gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    | |||||||||||||||| ||||||||||||||| | ||||||||||| ||||||||||||||||||||| |||||||    
T  31728422 tggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttcataatga 31728499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 78 - 324
Target Start/End: Complemental strand, 31274654 - 31274415
Alignment:
Q  78 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagta 177  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||| ||| ||||||||||||||| |||| || | |||||||||||||||||||     
T  31274654 ctgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtg 31274555  T
Q  178 t--gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattat 275  Q
    |  ||||||| |||||||| ||||||||||||||| | ||||||||||| ||||||||||||||||||||||| | |||        |||||||||||||    
T  31274554 tgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgacagtga--taaaaataatagtaattat 31274457  T
Q  276 tactattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    ||       ||||||||| ||||||||||| ||||||||||||| ||||    
T  31274456 ta-------ttttattcgagaatatcactttccataaatttagcttatg 31274415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 79 - 254
Target Start/End: Original strand, 5270380 - 5270557
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||| |||| || | ||||||||||||||||| | |    
T  5270380 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagaatgt 5270479  T
Q  179 -gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatac-ttgataatga 254  Q
     |||||||||||||||| ||||||||||||||| | | ||||||||| ||||||||||||||||||| ||||||||||    
T  5270480 ggggtcccacataaaatagaacacacacattagtagtatttaaattgtggtatttaattttaaatactttgataatga 5270557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 79 - 324
Target Start/End: Original strand, 37263520 - 37263758
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||||||||||||||| || || ||||||||| ||||||||||| ||| ||||||||||||||| |||| || | ||||||||||||||||||| |    
T  37263520 tgttggaacattgatgtgatgtttgatgaaaaattgaaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 37263619  T
Q  179 --gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattatt 276  Q
      ||||||| |||||||| ||||||||||||||| | ||||||||||| ||||||||||||||||||||||||| |||        ||||||||||||||    
T  37263620 gggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgatagtga--taaaaataatagtaattatt 37263717  T
Q  277 actattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    |       ||||||||| ||||||||||| ||||||||||||| ||||    
T  37263718 a-------ttttattcgagaatatcactttccataaatttagcttatg 37263758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 79 - 317
Target Start/End: Complemental strand, 16422184 - 16421953
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    ||||||||||||| |||||| |||||| | |||||||||||||||||| ||| ||||||||||||||| |||| || | ||||||||||||||||||| |    
T  16422184 tgttggaacattg-tgtgatgttggaaaataaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 16422086  T
Q  179 ggg--tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattatt 276  Q
    |||  ||||||||||||| |||||||| |||||| | ||||||||||| ||||||||||||| |||||||||||||||        ||||||||||        
T  16422085 gggggtcccacataaaatagaacacacgcattagtagtgtttaaattgcggtatttaattttcaatacttgataatga--taaaaataatagtaat---- 16421992  T
Q  277 actattatttttattcgtgaatatcacttcccataaattta 317  Q
      ||||||||||||||| ||||||||||| |||||||||||    
T  16421991 --tattatttttattcgagaatatcactttccataaattta 16421953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 79 - 254
Target Start/End: Original strand, 33467960 - 33468136
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    ||||||||||||  |||||| ||||||||||||||| ||||||||||| ||| ||||||||||||||| |||| || | | ||||||||||||||||| |    
T  33467960 tgttggaacattagtgtgatgttggaagaaaaattgaaagattaaacaccaagtaattatactttgatctaatgttgtgtaaattgaaaaaatagagtgt 33468059  T
Q  179 -gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
     || ||||||||||||| ||||||||||||||| | |||||||||||  ||||||||||||||||||||||||||||    
T  33468060 aggttcccacataaaatagaacacacacattagtagtgtttaaattgtagtatttaattttaaatacttgataatga 33468136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 91 - 254
Target Start/End: Complemental strand, 55252772 - 55252606
Alignment:
Q  91 gatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaa-tagagtatgg--gtcccac 187  Q
    |||||||| ||||| |||||||||||||| |||||||||| ||||||||||||||| |||| || | ||||||||||||| |||||| |||  |||||||    
T  55252772 gatgtgatgttggatgaaaaattggaagactaaacatcaagtaattatactttgatttaatgttgtgtgaattgaaaaaaatagagtgtggtggtcccac 55252673  T
Q  188 ataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    ||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||    
T  55252672 ataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatacttgataatga 55252606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 79 - 312
Target Start/End: Original strand, 13064770 - 13064994
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    ||||||||||||| |||||| |||||||||||||||||| | |||| | ||| ||||||||||||||| |||| ||   ||||||||||||||||||| |    
T  13064770 tgttggaacattggtgtgatgttggaagaaaaattggaaaaataaataccaagtaattatactttgatctaatgtt---tgaattgaaaaaatagagtgt 13064866  T
Q  179 ggg--tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattatt 276  Q
    |||  ||||||||||||| |||||||||||| |  | ||||||||||| |||||||||||||||||||||||||||||        ||||||||||        
T  13064867 gggggtcccacataaaatagaacacacacatcaatagtgtttaaattgcggtatttaattttaaatacttgataatga--taaaaataatagtaat---- 13064960  T
Q  277 actattatttttattcgtgaatatcacttcccataa 312  Q
      ||||||||||||||||||||||||||||||||||    
T  13064961 --tattatttttattcgtgaatatcacttcccataa 13064994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 79 - 324
Target Start/End: Original strand, 29349164 - 29349403
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    ||||||||||||| |||||| ||||||| |||| ||||||||||||||  || ||||||||||||||| || | ||   ||||||||||||||||||| |    
T  29349164 tgttggaacattggtgtgatgttggaaggaaaactggaagattaaacactaagtaattatactttgat-tagtgttgagtgaattgaaaaaatagagtgt 29349262  T
Q  179 g-ggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattatta 277  Q
    | ||||||||||||||| |||| |||||||||||| ||||||||||| |||||||||||||||||||| ||||||||        ||||| |||||||||    
T  29349263 gaggtcccacataaaatagaactcacacattagcagtgtttaaattgcggtatttaattttaaatactggataatga-taaaaaataatattaattatta 29349361  T
Q  278 ctattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
          ||||||||||||||||||| |||||||||||||||| ||||    
T  29349362 -----ttttttattcgtgaatatcatttcccataaatttagcttatg 29349403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 78 - 250
Target Start/End: Original strand, 37258821 - 37258993
Alignment:
Q  78 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagta 177  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||| ||| ||||||  ||||||| |||| || | |||||||||||||||||||     
T  37258821 ctgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaagtaatta--ctttgatctaatgttgtgtgaattgaaaaaatagagtg 37258918  T
Q  178 tggg--tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgata 250  Q
    ||||  |||| |||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||    
T  37258919 tgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgata 37258993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 78 - 254
Target Start/End: Original strand, 5925760 - 5925929
Alignment:
Q  78 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagta 177  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||| | ||| |||||||||||||||||||| || | |||||||||||||| |        
T  5925760 ctgttggaacattgatgtgatgttggatgaaaaattggaagattaaataccaagtaattatactttgatataatgttgtgtgaattgaaaaaatgg---- 5925855  T
Q  178 tgggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
     |||||||||||||||| ||  ||||||||||| | ||||||||||  |||||||||||||||||||||||||||||    
T  5925856 -gggtcccacataaaataga--acacacattagtagtgtttaaattatggtatttaattttaaatacttgataatga 5925929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 79 - 324
Target Start/End: Complemental strand, 2820930 - 2820693
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    ||||||||||||| |||||  ||||||| ||||||||||||||||||| ||| |||||||| |||||| || | || | |||||||||||| |||||| |    
T  2820930 tgttggaacattggtgtgaagttggaaggaaaattggaagattaaacaccaagtaattata-tttgatctagtgttgtgtgaattgaaaaattagagtgt 2820832  T
Q  179 ggg--tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattatt 276  Q
    |||  ||||||||||||| ||||||||||||||| | ||||||||||| ||||||||||||||| || ||||||||||        ||||||||||        
T  2820831 gggggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaattatttgataatga--taaaaataatagtaat---- 2820738  T
Q  277 actattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
      ||||||||||||| ||||||||||||||||||||||||||| ||||    
T  2820737 --tattatttttatt-gtgaatatcacttcccataaatttagcttatg 2820693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 79 - 315
Target Start/End: Original strand, 12822867 - 12823097
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    ||||||||||||  |||||| |||||| | |||||||||||| ||||| ||| ||||||||||||||| |||| || | ||||||||||||||||||| |    
T  12822867 tgttggaacattagtgtgatgttggaaaataaattggaagatcaaacaccaaataattatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 12822966  T
Q  179 --gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattatt 276  Q
      |||||||||||||||| |||| |||||||||| | |||||||| || ||||||||||||||||||||| |||||||        ||||||||||        
T  12822967 gggggtcccacataaaatagaactcacacattagtagtgtttaaactgtggtatttaattttaaatactttataatga--taaaaataatagtaat---- 12823060  T
Q  277 actattatttttattcgtgaatatcacttcccataaatt 315  Q
      ||||||||||||||  |||||||||||||||||||||    
T  12823061 --tattatttttattccagaatatcacttcccataaatt 12823097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 82 - 324
Target Start/End: Complemental strand, 51699065 - 51698826
Alignment:
Q  82 tggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatggg 181  Q
    |||||||||  | |||| |||||| | |||||| ||||||||||| ||| ||||||||||||||  |||| ||   ||||||||||||||||||| ||||    
T  51699065 tggaacattagtttgatgttggaaaataaattgaaagattaaacaccaaataattatactttgaactaatgttgcgtgaattgaaaaaatagagtgtggg 51698966  T
Q  182 --tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattattact 279  Q
      ||||||||||||| ||||||||||||||| | ||||||||||| ||||||||||||||||| |||||||||||         ||||||||||||||      
T  51698965 ggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatgcttgataatgataaaaaaaaaatagtaattatta-- 51698868  T
Q  280 attatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
        |||||||||| ||||||||||| ||||||||||||| ||||    
T  51698867 ---ttttttattcgagaatatcactttccataaatttagcttatg 51698826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 79 - 236
Target Start/End: Complemental strand, 19907427 - 19907269
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    ||||||||||||| |||||| ||||||||||||||| ||||||||||| ||| |||||||| |||||| || | || | ||||||||||||||| ||| |    
T  19907427 tgttggaacattggtgtgatgttggaagaaaaattgaaagattaaacaccaagtaattatattttgatctagtgttgtgtgaattgaaaaaataaagtgt 19907328  T
Q  179 -gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaatt 236  Q
     ||||| |||||||||| ||||||||||||||||| ||||||||||| |||||||||||    
T  19907327 ggggtctcacataaaatagaacacacacattagcagtgtttaaattgcggtatttaatt 19907269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 79 - 324
Target Start/End: Complemental strand, 13060606 - 13060366
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaa-aaaatagagta 177  Q
    ||||||||||||  |||||| ||| || | |||||||||||||||||  ||| ||||||||||||||| ||||||| | ||||||||| ||||||||||     
T  13060606 tgttggaacattagtgtgatgttgaaaaataaattggaagattaaaccccaagtaattatactttgatctaatattgtgtgaattgaaaaaaatagagtg 13060507  T
Q  178 tg--ggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattat 275  Q
    ||  |||| |||||||||  |||| |||||||| | | ||||||||||| |||||||||||||||||||||||||||||        ||||||||||       
T  13060506 tggtggtcacacataaaaaagaactcacacattggtagtgtttaaattgcggtatttaattttaaatacttgataatga--taacaataatagtaat--- 13060412  T
Q  276 tactattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
       | ||||||||||| | ||||||||||||||||||||||||| ||||    
T  13060411 ---tcttatttttatttgagaatatcacttcccataaatttagcttatg 13060366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 94 - 324
Target Start/End: Original strand, 32081139 - 32081361
Alignment:
Q  94 gtgatcttggaagaaaaattggaagattaaacatca-actaattatactttgatataatattatctgaattgaaaaaatagagtatgg--gtcccacata 190  Q
    ||||| |||||| | ||||||||||||||||||| | | ||||||||||||||| |||| |    ||||||||||||||||||| |||  ||||||| ||    
T  32081139 gtgatgttggaaaataaattggaagattaaacataatagtaattatactttgatctaatgtg---tgaattgaaaaaatagagtgtggaggtcccacgta 32081235  T
Q  191 aaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattattactattatttttat 290  Q
    |||| |||| |||||||||| | ||||||||||| | ||||||||||||||||||||||||| |        ||||||||||      ||||||||||||    
T  32081236 aaatagaactcacacattagtagtgtttaaattgtgatatttaattttaaatacttgataatta--taaaaataatagtaat------tattatttttat 32081327  T
Q  291 tcgtgaatatcacttcccataaatttagcctatg 324  Q
    ||| ||||||||||||||||||||||||| ||||    
T  32081328 tcgagaatatcacttcccataaatttagcttatg 32081361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 112 - 254
Target Start/End: Complemental strand, 19107685 - 19107540
Alignment:
Q  112 ttggaagattaaacatcaactaattatactttgatataa-tattatctgaattgaaaaaatagagtatgg--gtcccacataaaatggaacacacacatt 208  Q
    ||||||||||||||| ||| | |||| |||||||| ||| |||| | ||||||||||| ||||||| |||  |||||||||||||| |||||||||||||    
T  19107685 ttggaagattaaacaccaagttattaaactttgatctaagtattgtgtgaattgaaaatatagagtgtggaggtcccacataaaatagaacacacacatt 19107586  T
Q  209 agcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    || | ||||||||| | ||||||||||||||||||| |||||||||    
T  19107585 agtagtgtttaaatagtggtatttaattttaaatacctgataatga 19107540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 254
Target Start/End: Complemental strand, 23094247 - 23094071
Alignment:
Q  78 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagta 177  Q
    ||||||||||||||||||||  || ||| |||||||| ||||||||||| |||  ||||| | |||||  |||| | || ||||||||||||||||||      
T  23094247 ctgttggaacattgatgtgaagttagaaaaaaaattgaaagattaaacaccaaggaattagaatttgagctaatgtgatatgaattgaaaaaatagagag 23094148  T
Q  178 tgggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    ||||  |||||||||||  |||||||||||||| | || |||||||  |  ||||||||||||||||||||||||||    
T  23094147 tggggtccacataaaataaaacacacacattagtagtgattaaattacgagatttaattttaaatacttgataatga 23094071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 254
Target Start/End: Complemental strand, 19103072 - 19102928
Alignment:
Q  112 ttggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatgg--gtcccacataaaatggaacacacacatta 209  Q
    ||||||||||||||  ||| | |||| |||||||| || | || | ||||||||||||||||||| |||  |||||||||||||| ||||||||||||||    
T  19103072 ttggaagattaaactccaagttattaaactttgatctagtgttgtgtgaattgaaaaaatagagtgtggaggtcccacataaaatagaacacacacatta 19102973  T
Q  210 gcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
      | ||||||||| | | ||||||||||||||||| |||||||||    
T  19102972 atagtgtttaaatagtgatatttaattttaaatacctgataatga 19102928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 196 - 324
Target Start/End: Complemental strand, 19907268 - 19907148
Alignment:
Q  196 gaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattattactattatttttattcgtg 295  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||        |||||| |||      |||||||||||||||||    
T  19907268 gaacacacacattagcagtgtttaaattgcggtatttaattttaaatacttgatgatga--taaaaataatagaaat------tattatttttattcgtg 19907177  T
Q  296 aatatcacttcccataaatttagcctatg 324  Q
    |||||||||||||||||||||||| ||||    
T  19907176 aatatcacttcccataaatttagcttatg 19907148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 254
Target Start/End: Original strand, 33462315 - 33462488
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    ||||||||||||  ||| || || |||||||||||| |  |||||||| ||| |||||||| |||||| |||| || | ||||||||||||||||||| |    
T  33462315 tgttggaacattagtgtaatgttcgaagaaaaattgaataattaaacaccaaataattata-tttgatctaatgttgtgtgaattgaaaaaatagagtgt 33462413  T
Q  179 gg--gtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    ||  |||||| |||||||  || ||||||||||| | |||||||||||  || |||||||||||||||||||||||||    
T  33462414 ggaggtccca-ataaaat--aagacacacattagtagtgtttaaattgcagtgtttaattttaaatacttgataatga 33462488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 115 - 246
Target Start/End: Original strand, 8029328 - 8029457
Alignment:
Q  115 gaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat--gggtcccacataaaatggaacacacacattagca 212  Q
    |||||||||||| ||| |||||| |||||||| || |||| | ||||||||||||||||||| |  |||||||||||||||| |||||||||||    ||    
T  8029328 gaagattaaacaccaagtaattaaactttgatctagtattgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaacacacaca----ca 8029423  T
Q  213 atgtttaaattgaggtatttaattttaaatactt 246  Q
     |||||| || | |||||||||||||||||||||    
T  8029424 gtgtttacatagtggtatttaattttaaatactt 8029457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 132 - 254
Target Start/End: Original strand, 32220574 - 32220698
Alignment:
Q  132 taattatactttgatataatattatctgaattgaaaaaatagagtatggg--tcccacataaaatggaacacacacattagcaatgtttaaattgaggta 229  Q
    |||||||| |||||| ||||||| | |||||| |||||||||||| ||||  ||||||||||||| ||||| ||||||||  | ||||||||||  | ||    
T  32220574 taattatattttgatctaatattgtgtgaattaaaaaaatagagtgtgggggtcccacataaaatagaacatacacattattagtgtttaaattccgata 32220673  T
Q  230 tttaattttaaatacttgataatga 254  Q
    |||||||||||||| ||||||||||    
T  32220674 tttaattttaaatatttgataatga 32220698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 181 - 314
Target Start/End: Complemental strand, 6943819 - 6943684
Alignment:
Q  181 gtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatg--agnnnnnnntaatagtaattattac 278  Q
    |||||||||||||| ||||||| ||||||| |||||||||||||  ||||||||||| |||||||||||||||  |        |||||||| |  | |     
T  6943819 gtcccacataaaatagaacacatacattagtaatgtttaaattgctgtatttaatttcaaatacttgataatgataaaaaaaaataatagtagtagtaat 6943720  T
Q  279 tattatttttattcgtgaatatcacttcccataaat 314  Q
    ||||||||||||| ||||||||||||||||||||||    
T  6943719 tattatttttattggtgaatatcacttcccataaat 6943684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 117 - 254
Target Start/End: Complemental strand, 27183326 - 27183197
Alignment:
Q  117 agattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatgggtcccacataaaatggaacacacacattagcaatgt 216  Q
    |||||||| | ||| |||||||||||||||||||| || | ||||||||||||      |  |||||||||||||||| |||||||||  |||| | |||    
T  27183326 agattaaataccaagtaattatactttgatataatgttgtgtgaattgaaaaa------tgggggtcccacataaaatagaacacaca--ttagtagtgt 27183235  T
Q  217 ttaaattgaggtatttaattttaaatacttgataatga 254  Q
    |||||||  |||||||||||||||||||||||||||||    
T  27183234 ttaaattatggtatttaattttaaatacttgataatga 27183197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 115 - 254
Target Start/End: Complemental strand, 12875507 - 12875366
Alignment:
Q  115 gaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat--gggtcccacataaaatggaacacacacattagca 212  Q
    |||||||||||| ||| |||||| ||||| || || | || | ||||||||||||||||||| |  ||||||  |||||||| |||| |||||||||| |    
T  12875507 gaagattaaacaccaagtaattagactttcatctagtgttgtgtgaattgaaaaaatagagtgtgggggtcctgcataaaatagaacccacacattagta 12875408  T
Q  213 atgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    || ||||||| | ||||||| |||||||||| ||||||||||    
T  12875407 atatttaaatagtggtatttgattttaaatatttgataatga 12875366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 324
Target Start/End: Complemental strand, 40409046 - 40408842
Alignment:
Q  116 aagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatgggtcccacataaaatggaacacacacattagcaatg 215  Q
    |||||||||||  || | ||||||||||||| |||| || | |||||| ||||||||| ||  |||| ||| ||||||| ||||||||| ||||  | ||    
T  40409046 aagattaaacactaaatgattatactttgatctaatgttgtatgaattaaaaaaatagtgtg-gggtaccaaataaaatagaacacacatattattagtg 40408948  T
Q  216 tttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattattactattatttttattcgtgaatatcacttcccataaatt 315  Q
    ||||||||| |||||||||||||||||| ||||||    |       |||||||| |  | | ||||||||||||| ||||||||||||||||||| |||    
T  40408947 tttaaattgcggtatttaattttaaatatttgata---tggtaaaaataatagtagtagtaattattatttttattagtgaatatcacttcccatacatt 40408851  T
Q  316 tagcctatg 324  Q
    |||| ||||    
T  40408850 tagcttatg 40408842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 6943902 - 6943834
Alignment:
Q  78 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgat 146  Q
    |||||| ||||||  |||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  6943902 ctgttgcaacattagtgtgatgttggaagaaaaattggaagattaaacatcaagtaattatactttgat 6943834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 254
Target Start/End: Original strand, 48275829 - 48275970
Alignment:
Q  112 ttggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatgggtc-ccacataaaatggaacacacacattag 210  Q
    ||||||||||||||||||| | |||| |||||||| |  | || | ||||||||||||||||||| ||||   ||| |||||||  |||||||||  |||    
T  48275829 ttggaagattaaacatcaagttattaaactttgatcttgtgttgtgtgaattgaaaaaatagagtgtgggggtccatataaaatataacacacac--tag 48275926  T
Q  211 caatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    || ||||||||| | |||||||| |||||||||||| |||||||    
T  48275927 cagtgtttaaatagtggtatttatttttaaatacttaataatga 48275970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 318
Target Start/End: Complemental strand, 31766999 - 31766779
Alignment:
Q  78 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaa-tagagt 176  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||||||             ||||||||| |||| || | ||||||||||||| |||| |    
T  31766999 ctgttggaacattgatgtgatgttggatgaaaaattgaaagattaaa-------------tactttgatctaatgtt-tgtgaattgaaaaaaatagatt 31766914  T
Q  177 atggg--tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaa-ttttaaatacttgataatgagnnnnnnntaatagtaatt 273  Q
     ||||  ||||||||||||| ||||||||||||||  | || |||||||| ||||||||| ||||||||||||||||||||        |||||||||||    
T  31766913 gtgggggtcccacataaaatagaacacacacattaatagtg-ttaaattgtggtatttaatttttaaatacttgataatga--taaaaataatagtaatt 31766817  T
Q  274 attactattatttttattcgtgaatatcacttcccataaatttag 318  Q
    ||||       ||||||||| ||||||||||| ||||||||||||    
T  31766816 atta-------ttttattcgagaatatcactttccataaatttag 31766779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 243
Target Start/End: Complemental strand, 47245230 - 47245103
Alignment:
Q  116 aagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatgggtcccacataaaatggaacacacacattagcaatg 215  Q
    |||||||||||  || | |||| | |||||| || |||| | |||||||||||||||| ||  || ||| | ||||||| ||||||||||||||  | ||    
T  47245230 aagattaaacactaagttattaaagtttgatctagtattgtgtgaattgaaaaaatagtgtggggatcctaaataaaatagaacacacacattattagtg 47245131  T
Q  216 tttaaattgaggtatttaattttaaata 243  Q
    ||||||| | | ||||||||||||||||    
T  47245130 tttaaatagcgatatttaattttaaata 47245103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 243
Target Start/End: Original strand, 8028148 - 8028271
Alignment:
Q  112 ttggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatgggtcccacataaaatggaacacacacattagc 211  Q
    |||||||||||||||   | |||||| ||||||||  ||| || | ||||||||||||||||||| |  |     |||||||| |||||||||||||||     
T  8028148 ttggaagattaaaca---agtaattaaactttgatcgaatgttgtgtgaattgaaaaaatagagtgtaag-----cataaaatagaacacacacattagt 8028239  T
Q  212 aatgtttaaattgaggtatttaattttaaata 243  Q
    | ||||||||| |  |||||||||||||||||    
T  8028240 agtgtttaaatagttgtatttaattttaaata 8028271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 254
Target Start/End: Complemental strand, 12878961 - 12878864
Alignment:
Q  158 tgaattgaaaaaatagagtatggg--tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    |||||||||||||||||||| | |  ||||||||||||| ||||| ||||||||  | |||||||||   | ||||| ||| |||||||||||||||||    
T  12878961 tgaattgaaaaaatagagtaagaggatcccacataaaatagaacatacacattaatagtgtttaaataatgatattt-attataaatacttgataatga 12878864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 317
Target Start/End: Original strand, 39216249 - 39216287
Alignment:
Q  279 tattatttttattcgtgaatatcacttcccataaattta 317  Q
    ||||||||||||||||| |||||||||| ||||||||||    
T  39216249 tattatttttattcgtgtatatcacttcgcataaattta 39216287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 75 - 324
Target Start/End: Complemental strand, 26342348 - 26342108
Alignment:
Q  75 aacctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaataga 174  Q
    |||||||||||||||| ||||||| ||||| |||||||| |||||||||| ||||| |||||||||||| || ||||||||| ||||||||||||||||     
T  26342348 aacctgttggaacattaatgtgatgttggatgaaaaattcgaagattaaatatcaagtaattatactttaatttaatattatgtgaattgaaaaaatagt 26342249  T
Q  175 gtatgggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaatta 274  Q
    ||  |||||||||||||||| ||||||||||||||| | ||||||||||| | |||||||||||||||||||||||||||        ||||||||||||    
T  26342248 gtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtgatatttaattttaaatacttgataatga--taaaaataatagtaatta 26342151  T
Q  275 ttactattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    |||       ||||||||| ||||||||||| ||||||||||||| ||||    
T  26342150 tta-------ttttattcgagaatatcactttccataaatttagcttatg 26342108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 79 - 317
Target Start/End: Complemental strand, 3046712 - 3046481
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    ||||| ||||||| |||||| ||||||||||||||| ||||||||||| ||| |||||||| ||||||||||  || | ||||||||||||||  ||| |    
T  3046712 tgttgaaacattggtgtgatgttggaagaaaaattgaaagattaaacaccaagtaattataatttgatataaagttgtgtgaattgaaaaaattaagtgt 3046613  T
Q  179 ggg-tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattatta 277  Q
    ||| ||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||        ||| | |||| ||||    
T  3046612 ggggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatacttgataatga--------taaaaataataatta 3046521  T
Q  278 ctattatttttattcgtgaatatcacttcccataaattta 317  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  3046520 ctataatttttattcgtgaatatcacttcctataaattta 3046481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 79 - 250
Target Start/End: Complemental strand, 4931362 - 4931189
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||||||||||||||| ||||| ||||||||| ||||||||||| ||| |||||||||||||||||||| || | ||||||||||||||||||| |    
T  4931362 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaagtaattatactttgatataatgttgtgtgaattgaaaaaatagagtgt 4931263  T
Q  179 --gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgata 250  Q
      ||||||| |||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||    
T  4931262 gggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgata 4931189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 79 - 324
Target Start/End: Complemental strand, 12257160 - 12256922
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    ||||||||||||| |||||| |||||| | || |||||||||||| || ||| ||||||||||||||| |||| || | | ||||||||||||||||| |    
T  12257160 tgttggaacattggtgtgatgttggaatagaatttggaagattaatcaccaaataattatactttgatttaatgttgtgtaaattgaaaaaatagagtgt 12257061  T
Q  179 ggg-tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattatta 277  Q
    ||| ||||||||||||| |||||||| |||||| | ||||||||||| |||||||||||||||||||||||||||||        ||||||||||         
T  12257060 ggggtcccacataaaatagaacacacgcattagtagtgtttaaattgtggtatttaattttaaatacttgataatga--taaaaataatagtaat----- 12256968  T
Q  278 ctattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
     ||||||||||||||||||||||||||||||||||||||||| ||||    
T  12256967 -tattatttttattcgtgaatatcacttcccataaatttagcttatg 12256922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 79 - 312
Target Start/End: Complemental strand, 21672343 - 21672117
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    ||||||||||||| |||||| |||||||||||||||||||| |||||| ||| ||||||||||||||| |||  || | ||||||||||||||||| | |    
T  21672343 tgttggaacattggtgtgatgttggaagaaaaattggaagaataaacaccaagtaattatactttgatctaacgttgtgtgaattgaaaaaatagaatgt 21672244  T
Q  179 ggg-tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattatta 277  Q
    ||| ||||||||||||| || |||||||||||| | ||||||||||| |||||||||||||| ||||||||||||||        ||||||||||         
T  21672243 gggatcccacataaaatagagcacacacattagtactgtttaaattgcggtatttaattttatatacttgataatga--taaaaataatagtaat----- 21672151  T
Q  278 ctattatttttattcgtgaatatcacttcccataa 312  Q
     ||||||||||||||||||||||||||||||||||    
T  21672150 -tattatttttattcgtgaatatcacttcccataa 21672117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 79 - 324
Target Start/End: Complemental strand, 3881110 - 3880868
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||| | |||| |||| ||||||||||||||||||||||||| | ||| ||||||||||||||| |||||||   ||||||||||||||||||| |    
T  3881110 tgttggaatagtgatctgatgttggaagaaaaattggaagattaaataccaagtaattatactttgatctaatattgcgtgaattgaaaaaatagagtgt 3881011  T
Q  179 --gggtcccacataaaatggaacacaca---cattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaatt 273  Q
      ||||| |||||||||| |||||||||   |||||| | || |||||||| | |||||||||||||||||||||||||||        ||||||||||     
T  3881010 gggggtctcacataaaatagaacacacacatcattagtagtgcttaaattgtgatatttaattttaaatacttgataatga--taaaaataatagtaat- 3880914  T
Q  274 attactattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
         ||||||||||||| ||||||||||||||||||||||||||| ||||    
T  3880913 -----tattatttttatttgtgaatatcacttcccataaatttagcttatg 3880868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 109 - 317
Target Start/End: Original strand, 42625565 - 42625772
Alignment:
Q  109 aaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat--gggtcccacataaaatggaacacacaca 206  Q
    |||||||||||||||||| ||| ||||||||||||||| |||| |||| ||||||||||||||||||| |  |||||||||||||||| |||| ||||||    
T  42625565 aaattggaagattaaacaccaagtaattatactttgatctaatgttatgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaactcacaca 42625664  T
Q  207 ttagcaatgtttaaattgag-----gtatttaattttaaatacttgataatgagnnnnnnntaatagtaattattactattatttttattcgtgaatatc 301  Q
    |||| | ||||||||||| |     ||||||||||||||||||||||||||||        ||||||||||      ||||||||||||||| |||||||    
T  42625665 ttagtagtgtttaaattgcggtgcagtatttaattttaaatacttgataatga--taaaaataatagtaat------tattatttttattcgagaatatc 42625756  T
Q  302 acttcccataaattta 317  Q
    |||| |||||||||||    
T  42625757 actttccataaattta 42625772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 87 - 224
Target Start/End: Original strand, 44508261 - 44508400
Alignment:
Q  87 cattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatggg--tcc 184  Q
    |||||||||||| ||||| ||||||||||||||||||| ||||| ||||||||||||||| ||||||| | ||||||||||||||||||| ||||  |||    
T  44508261 cattgatgtgatgttggatgaaaaattggaagattaaatatcaagtaattatactttgatctaatattgtgtgaattgaaaaaatagagtgtgggaatcc 44508360  T
Q  185 cacataaaatggaacacacacattagcaatgtttaaattg 224  Q
    || ||||||| ||||||||| ||||| | |||||||||||    
T  44508361 catataaaatagaacacacatattagtagtgtttaaattg 44508400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 2595905 - 2595776
Alignment:
Q  83 ggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatggg- 181  Q
    ||||||||||||| || ||||||||||||||||||||||||||| ||| |||||| ||||| || |||| || | ||||||||||||||||||| ||||     
T  2595905 ggaacattgatgtaatgttggaagaaaaattggaagattaaacaccaaataattacactttaatctaatgttgtgtgaattgaaaaaatagagtgtgggt 2595806  T
Q  182 -tcccacataaaatggaacacacacattag 210  Q
     ||||||||||||| |||||||||||||||    
T  2595805 atcccacataaaatagaacacacacattag 2595776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 115 - 254
Target Start/End: Original strand, 13313307 - 13313448
Alignment:
Q  115 gaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatgg--gtcccacataaaatggaacacacacattagca 212  Q
    ||||||||||||| || | | || |||||||| || |||| | ||||||||||||||||||| |||  |||||||||||||| ||||||||||||||| |    
T  13313307 gaagattaaacattaagttactaaactttgatttagtattgtgtgaattgaaaaaatagagtgtggatgtcccacataaaatagaacacacacattagta 13313406  T
Q  213 atgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
     ||||||||| | |||||||||||||||||||||||||||||    
T  13313407 gtgtttaaatagtggtatttaattttaaatacttgataatga 13313448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 117 - 254
Target Start/End: Original strand, 23247554 - 23247692
Alignment:
Q  117 agattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatg-ggtcccacataaaatggaacacacacattagcaatg 215  Q
    |||||||||| ||| ||||||||||||||| |||| |||| ||||||||||||||||||| |  |||||||| |||||| ||| ||| ||||||| | ||    
T  23247554 agattaaacaccaagtaattatactttgatctaatgttatgtgaattgaaaaaatagagtgtatggtcccacctaaaatagaaaacaaacattagtagtg 23247653  T
Q  216 tttaaattgaggtatttaattttaaatacttgataatga 254  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  23247654 tttaaattacggtatttaattttaaatacttgataatga 23247692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 252
Target Start/End: Original strand, 10392044 - 10392221
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaa--tagagt 176  Q
    ||||||||||||| |||||  |||| || ||||| | ||||||||||| ||| ||||||||||||||| || | || | |||||||||||||  ||||||    
T  10392044 tgttggaacattggtgtgaagttgggaggaaaatcgaaagattaaacaccaagtaattatactttgatctagtgttgtgtgaattgaaaaaaaatagagt 10392143  T
Q  177 atg--ggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataat 252  Q
     ||  || |||||||||||| |||||||||  ||| || ||||||||||| |||||||||||||||||||||||||||    
T  10392144 gtgagggccccacataaaatagaacacacatgttatcagtgtttaaattgcggtatttaattttaaatacttgataat 10392221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 179 - 324
Target Start/End: Original strand, 12181811 - 12181951
Alignment:
Q  179 gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattattac 278  Q
    |||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||        |||||||||| ||       
T  12181811 gggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatacttgataatga--taaaaataatagtaataat--- 12181905  T
Q  279 tattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
     ||| |||||||||||||||||||||||| ||||||||||| ||||    
T  12181906 cattttttttattcgtgaatatcacttccaataaatttagcttatg 12181951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 79 - 204
Target Start/End: Complemental strand, 12802421 - 12802295
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    ||||||||||||  |||||| |||||| | |||||||||||||||||| ||| |||||||||||| || |||| || | ||||||||||||||||||| |    
T  12802421 tgttggaacattagtgtgatgttggaaaataaattggaagattaaacaccaagtaattatactttaatctaatgttgtgtgaattgaaaaaatagagtgt 12802322  T
Q  179 -gggtcccacataaaatggaacacaca 204  Q
     |||||||||||||||| |||| ||||    
T  12802321 ggggtcccacataaaatagaactcaca 12802295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 112 - 254
Target Start/End: Original strand, 26286146 - 26286292
Alignment:
Q  112 ttggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaa----tagagtatgggtcccacataaaatggaacacacacat 207  Q
    ||||||||||||||| ||| |||||| |||||||| || | || | | |||||||||||    ||| ||  |||||||||||||||| ||||||||||||    
T  26286146 ttggaagattaaacaccaagtaattaaactttgatctagtgttgtataaattgaaaaaaaaaatagtgtgggggtcccacataaaatagaacacacacat 26286245  T
Q  208 tagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    ||| | ||||||||| | ||||||||||||||||||  |||||||||    
T  26286246 tagtagtgtttaaatagtggtatttaattttaaataactgataatga 26286292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 23151683 - 23151804
Alignment:
Q  119 attaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatgg--gtcccacataaaatggaacacacac--attagcaat 214  Q
    |||||||||||| ||||||||||||||| |||| || | ||||||||||||||| ||| |||  ||||| |||||||| ||||||||||  ||||| | |    
T  23151683 attaaacatcaagtaattatactttgatctaatgttgtgtgaattgaaaaaataaagtgtgggagtcccgcataaaatagaacacacacatattagtagt 23151782  T
Q  215 gtttaaattgaggtatttaatt 236  Q
    |||||||||||| |||||||||    
T  23151783 gtttaaattgagatatttaatt 23151804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 4580551 - 4580427
Alignment:
Q  132 taattatactttgatataatattatctgaattgaaaaaatagagtat--gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggta 229  Q
    |||||| |||||||| || | || | |||||| |||||||||||| |  |||||||| ||||||| ||||||||||||||| | |||||| || | ||||    
T  4580551 taattaaactttgatttagtgttgtgtgaattaaaaaaatagagtgtaggggtcccatataaaatagaacacacacattagtagtgtttatatagtggta 4580452  T
Q  230 tttaattttaaatacttgataatga 254  Q
    ||||||| ||||||| |||||||||    
T  4580451 tttaattctaaatacctgataatga 4580427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 10387410 - 10387484
Alignment:
Q  181 gtcccacataaaatggaacacacacattagcaa-tgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    |||||| ||||||| ||||||||| |||||||  ||||||||||| |||||||||||||||||| ||||||||||    
T  10387410 gtcccatataaaatagaacacacatattagcaggtgtttaaattgtggtatttaattttaaatatttgataatga 10387484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 27239100 - 27239055
Alignment:
Q  279 tattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  27239100 tattatttttattcgtgaatatcacttcccataaatttagcttatg 27239055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 317
Target Start/End: Complemental strand, 8269312 - 8269207
Alignment:
Q  204 acattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattattactattatttttattcgtgaatatcac 303  Q
    ||||||| | |||||||| || | |||||||||||||||||||||||||||        |||||||||||||||      ||||||||||||||||||||    
T  8269312 acattagaagtgtttaaactgcgatatttaattttaaatacttgataatga--taaaaataatagtaattatta------tttttattcgtgaatatcac 8269221  T
Q  304 ttcccataaattta 317  Q
    || |||||||||||    
T  8269220 tttccataaattta 8269207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 12800405 - 12800352
Alignment:
Q  201 cacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    |||||||||| | |||||||||||  ||||||||||||||||||||||||||||    
T  12800405 cacacattagtagtgtttaaattgcagtatttaattttaaatacttgataatga 12800352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 9814941 - 9815008
Alignment:
Q  186 acataaaatggaacacacacattagcaatgtttaaattgaggtatttaa-ttttaaatacttgataat 252  Q
    ||||||||| ||||||| ||||||| | | ||||||||| ||||||||| ||||||||||||||||||    
T  9814941 acataaaatagaacacatacattagtagtttttaaattgcggtatttaatttttaaatacttgataat 9815008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 318
Target Start/End: Original strand, 10392241 - 10392280
Alignment:
Q  279 tattatttttattcgtgaatatcacttcccataaatttag 318  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  10392241 tattatttttattcatgaatatcacttcccataaatttag 10392280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 10716866 - 10716933
Alignment:
Q  186 acataaaatggaacacacacattagcaatgtttaaattgaggtatttaa-ttttaaatacttgataat 252  Q
    ||||||||| ||||||| ||||||| | | ||||||||| ||||||||| ||||||||||||||||||    
T  10716866 acataaaatagaacacatacattagtagtttttaaattgcggtatttaatttttaaatacttgataat 10716933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 240
Target Start/End: Complemental strand, 30259368 - 30259238
Alignment:
Q  112 ttggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatgg--gtcccacataaaatggaacacacacatta 209  Q
    ||||||||||||| | ||| |||||| |||||||| || | || | | ||||||||||||||||| |||  |  ||||||||||| || |||| ||||||    
T  30259368 ttggaagattaaataccaagtaattaaactttgatctagtgttttgtaaattgaaaaaatagagtgtgggagatccacataaaatagatcacatacatta 30259269  T
Q  210 gcaatgtttaaattgaggtatttaattttaa 240  Q
    | | ||||||||| | | |||||||||||||    
T  30259268 gtagtgtttaaatagtgatatttaattttaa 30259238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 16373293 - 16373248
Alignment:
Q  279 tattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    ||||||||||||||||| ||||||||| ||||||||||||| ||||    
T  16373293 tattatttttattcgtgtatatcactttccataaatttagcttatg 16373248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 23247891 - 23247936
Alignment:
Q  279 tattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    |||||||||||||||| |||||||||||||||||||| ||| ||||    
T  23247891 tattatttttattcgtaaatatcacttcccataaattgagcttatg 23247936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 27246697 - 27246742
Alignment:
Q  279 tattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    ||||||||||||||||| |||||||||| |||||||||||| ||||    
T  27246697 tattatttttattcgtggatatcacttctcataaatttagcttatg 27246742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 318
Target Start/End: Original strand, 6590164 - 6590203
Alignment:
Q  279 tattatttttattcgtgaatatcacttcccataaatttag 318  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  6590164 tattatttttattcgtggatatcatttcccataaatttag 6590203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 10387513 - 10387547
Alignment:
Q  290 ttcgtgaatatcacttcccataaatttagcctatg 324  Q
    |||||||||||||||||||||||||||||| ||||    
T  10387513 ttcgtgaatatcacttcccataaatttagcttatg 10387547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 2595771 - 2595726
Alignment:
Q  279 tattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    |||| |||||||||| ||||||||||||||||||| ||||| ||||    
T  2595771 tattctttttattcgagaatatcacttcccataaacttagcttatg 2595726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 8269394 - 8269350
Alignment:
Q  132 taattatactttgatataatattatctgaattgaaaaaatagagt 176  Q
    ||||||||||||||| ||||||| | ||||||||| |||||||||    
T  8269394 taattatactttgatctaatattgtgtgaattgaataaatagagt 8269350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 319
Target Start/End: Original strand, 9815027 - 9815067
Alignment:
Q  279 tattatttttattcgtgaatatcacttcccataaatttagc 319  Q
    |||||||||||||| | ||||||||||| ||||||||||||    
T  9815027 tattatttttattcatcaatatcacttctcataaatttagc 9815067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 319
Target Start/End: Original strand, 10716952 - 10716992
Alignment:
Q  279 tattatttttattcgtgaatatcacttcccataaatttagc 319  Q
    |||||||||||||| | ||||||||||| ||||||||||||    
T  10716952 tattatttttattcatcaatatcacttctcataaatttagc 10716992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 44508427 - 44508463
Alignment:
Q  218 taaattgaggtatttaattttaaatacttgataatga 254  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  44508427 taaattgtggtatttaattttaaatatttgataatga 44508463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 78 - 324
Target Start/End: Complemental strand, 18473146 - 18472907
Alignment:
Q  78 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagta 177  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||  || ||||||||||||||| |||| || | |||||||||||||||||||     
T  18473146 ctgttggaacattgatgtgatgttggatgaaaaattggaagattaaacacaaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtg 18473047  T
Q  178 t--gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattat 275  Q
    |  |||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||        |||||||||||||    
T  18473046 tgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatga--taaaaataatagtaattat 18472949  T
Q  276 tactattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    ||       ||||||||| ||||||||||| ||||||||||||| ||||    
T  18472948 ta-------ttttattcgagaatatcactttccataaatttagcttatg 18472907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 79 - 324
Target Start/End: Complemental strand, 20521100 - 20520861
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    ||||||||||||  |||||| ||||||||||||||||||||||||||| ||| ||||||||||||||| |||| || | ||||||||||||||||||| |    
T  20521100 tgttggaacattagtgtgatgttggaagaaaaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 20521001  T
Q  179 --gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattatt 276  Q
      |||||||||||||||| ||| ||||||||||| | ||||||||||| ||||||||| |||||||||||||||||||        ||||||||||        
T  20521000 gggggtcccacataaaatagaatacacacattagtagtgtttaaattgcggtatttaactttaaatacttgataatga--taaaaataatagtaat---- 20520907  T
Q  277 actattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
      ||||||||||||||| ||||||||||||||||||||||||| ||||    
T  20520906 --tattatttttattcgagaatatcacttcccataaatttagcttatg 20520861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 79 - 319
Target Start/End: Original strand, 14437650 - 14437881
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||| |    || | ||||||||||||||||||| |    
T  14437650 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaagtaattatactttgatctg---ttgtgtgaattgaaaaaatagagtgt 14437746  T
Q  179 gg--gtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattatt 276  Q
    ||  ||| |||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||        ||| | |||| ||     
T  14437747 ggaggtctcacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatga--------taaaaataataata 14437838  T
Q  277 actattatttttattcgtgaatatcacttcccataaatttagc 319  Q
    | ||||||||||||||| ||||||||||| |||||||||||||    
T  14437839 attattatttttattcgagaatatcactttccataaatttagc 14437881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 79 - 254
Target Start/End: Original strand, 757321 - 757497
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||| |||| || | ||||||||||||||||||| |    
T  757321 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 757420  T
Q  179 --gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
      ||||| |||||||||| ||||||||||||||| | ||||||||||| ||||||||| |||||||||||||||||||    
T  757421 gggggtctcacataaaatagaacacacacattagtagtgtttaaattgtggtatttaa-tttaaatacttgataatga 757497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 79 - 318
Target Start/End: Original strand, 7570172 - 7570404
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||||||| ||||||| ||||| ||||||||| ||||||||||| ||| ||||||||||||||| |||| || | ||||||||||||||||||| |    
T  7570172 tgttggaacattaatgtgatgttggatgaaaaattgaaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 7570271  T
Q  179 --gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattatt 276  Q
      ||||||| |||||||| ||||||||| ||||| | ||||||||||| |||||||||||||||||||||||||||||        ||||||||||||||    
T  7570272 gggggtcccgcataaaatagaacacacatattagtagtgtttaaattgtggtatttaattttaaatacttgataatga--taaaaataatagtaattatt 7570369  T
Q  277 actattatttttattcgtgaatatcacttcccataaatttag 318  Q
    |       ||||||||| ||||||||||| ||||||||||||    
T  7570370 a-------ttttattcgagaatatcactttccataaatttag 7570404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 79 - 250
Target Start/End: Original strand, 23660446 - 23660619
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||||||||||||||| ||||| ||||||||| ||||||||||| ||| ||||||||||||||| |||| || | ||||||||||||||||||| |    
T  23660446 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 23660545  T
Q  179 g--ggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgata 250  Q
    |  | |||||||||||||  |||||||||||||| | ||||||||||| |||||||||||||||||||||||||    
T  23660546 ggagctcccacataaaataaaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgata 23660619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 79 - 250
Target Start/End: Original strand, 23665078 - 23665251
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||||||||||||||| ||||| ||||||||| ||||||||||| ||| ||||||||||||||| |||| || | ||||||||||||||||||| |    
T  23665078 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 23665177  T
Q  179 g--ggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgata 250  Q
    |  | ||||| ||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||    
T  23665178 ggagctcccatataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgata 23665251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 78 - 324
Target Start/End: Original strand, 12970764 - 12971006
Alignment:
Q  78 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagta 177  Q
    |||||||||||||||| |||| ||||| ||||||| ||||||||||||| ||| ||||||||| ||||| |||| || | ||||||||||||||| |||     
T  12970764 ctgttggaacattgatatgatgttggatgaaaaatcggaagattaaacaccaagtaattatacgttgatttaatgttgtgtgaattgaaaaaataaagtg 12970863  T
Q  178 tg--ggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaatttt-aaatacttgataatgagnnnnnnntaatagtaatta 274  Q
    ||  | ||||||||||||| |||||||||| |||| | ||||||||||| ||||||||||||| ||||||| ||||||||        ||||||||||      
T  12970864 tggtgatcccacataaaatagaacacacactttagtagtgtttaaattgcggtatttaattttaaaatactggataatga-taaaaaataatagtaat-- 12970960  T
Q  275 ttactattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
        ||||||||||||||||||||||||||||||||||||||||| ||||    
T  12970961 ----tattatttttattcgtgaatatcacttcccataaatttagcttatg 12971006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 79 - 254
Target Start/End: Complemental strand, 18468351 - 18468174
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaa-aaaatagagta 177  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||| ||| |||||||| |||||| |||| || | ||||||||| ||||||||||     
T  18468351 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaagtaattatagtttgatctaatgttgtgtgaattgaaaaaaatagagtg 18468252  T
Q  178 t-gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    | |||  | |||||| || ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||    
T  18468251 tgggggtctacataatatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatga 18468174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 95 - 254
Target Start/End: Complemental strand, 55326899 - 55326739
Alignment:
Q  95 tgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatggg--tcccacataaa 192  Q
    |||| ||||| ||||||||||||||||||||| ||| |||||||| |||||| |||| || | ||||||||||||||| ||| ||||  |||||||||||    
T  55326899 tgatgttggatgaaaaattggaagattaaacaccaagtaattata-tttgatctaatgttgtgtgaattgaaaaaatatagtgtgggggtcccacataaa 55326801  T
Q  193 atggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    || ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||    
T  55326800 atagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatga 55326739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 78 - 324
Target Start/End: Complemental strand, 46965152 - 46964913
Alignment:
Q  78 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagta 177  Q
    |||||||||||||  ||| || |||||| | |||||||||||||||||| ||| ||||||||||||||| |||| || | |||||||||||||||||||     
T  46965152 ctgttggaacattagtgtaatgttggaaaataaattggaagattaaacaccaaataattatactttgatctaatgttgtgtgaattgaaaaaatagagtg 46965053  T
Q  178 t--gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattat 275  Q
    |  ||| |||||||||||| |||| |||||||||  | |||||||| || |||||||||||||||||||||||||||||        ||| | |||| ||    
T  46965052 tgagggccccacataaaatagaactcacacatta-tagtgtttaaactgcggtatttaattttaaatacttgataatga--------taaaaataataat 46964962  T
Q  276 tactattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
     |  |||||||||||||| |||||||||||| |||||||||||| ||||    
T  46964961 aataattatttttattcgagaatatcacttcacataaatttagcttatg 46964913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 79 - 254
Target Start/End: Complemental strand, 27710067 - 27709893
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatat-aatattatctgaattgaaaaaatagagta 177  Q
    |||||||||||||||||||| ||| | ||||||||||||||||||||| ||| || |||||||||||| | ||| || | |||||||||||||||||||     
T  27710067 tgttggaacattgatgtgatgttgaatgaaaaattggaagattaaacaccaagta-ttatactttgattttaatgttgtgtgaattgaaaaaatagagtg 27709969  T
Q  178 tggg-tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    |||| ||||||||||||| ||||| ||   |||| | ||||||||||| |||||||||||||||||||||||||||||    
T  27709968 tggggtcccacataaaatagaacatacg--ttagtagtgtttaaattgtggtatttaattttaaatacttgataatga 27709893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 112 - 254
Target Start/End: Original strand, 3656247 - 3656391
Alignment:
Q  112 ttggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaataga--gtatgggtcccacataaaatggaacacacacatta 209  Q
    ||||||||||||||| ||| |||||| |||||||| || | || | |||||||||||||||||  ||| |||||||||||||||| ||||||  ||||||    
T  3656247 ttggaagattaaacaccaagtaattaaactttgatttagtgttgtgtgaattgaaaaaatagaatgtaggggtcccacataaaatagaacacggacatta 3656346  T
Q  210 gcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    | | ||||||||| | ||||||||||||||||||| |||||||||    
T  3656347 gtagtgtttaaatagtggtatttaattttaaatacctgataatga 3656391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 79 - 241
Target Start/End: Complemental strand, 20175529 - 20175368
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    ||||||||||||  |||||| |||||| | |||||| ||||||||||| ||| ||||||||||||||| |||| || | | ||||||||||||||||| |    
T  20175529 tgttggaacattagtgtgatgttggaaaataaattgaaagattaaacaccaagtaattatactttgatctaatgttgtgttaattgaaaaaatagagtgt 20175430  T
Q  179 -gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaa 241  Q
     |||| ||||||||||| ||  ||||||||||| | | |||||||||  |||||||||||||||    
T  20175429 ggggttccacataaaataga--acacacattagtagtatttaaattgcagtatttaattttaaa 20175368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 324
Target Start/End: Original strand, 39774890 - 39775020
Alignment:
Q  185 cacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattattactattat 284  Q
    |||||||||| ||||||||| ||||| | ||||||||||| |||||||||||||||||||||||||||||        |||||||||||||||           
T  39774890 cacataaaatagaacacacatattagtagtgtttaaattgtggtatttaattttaaatacttgataatga--taaaaataatagtaattatta------- 39774980  T
Q  285 ttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    ||||||||| ||||||||||| ||||||||||||| ||||    
T  39774981 ttttattcgagaatatcactttccataaatttagcttatg 39775020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 112 - 254
Target Start/End: Complemental strand, 55432330 - 55432189
Alignment:
Q  112 ttggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatggg--tcccacataaaatggaacacacacatta 209  Q
    ||||||||||||||| ||| |||||||| |||||| ||||  | | ||||||||||||||| ||| ||||  ||||||| ||||| |||||||||  |||    
T  55432330 ttggaagattaaacaccaagtaattata-tttgatctaatgctgtgtgaattgaaaaaataaagtgtgggggtcccacacaaaatagaacacaca--tta 55432234  T
Q  210 gcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    | | |||||||||||  ||||||||||||||||| ||||||||||    
T  55432233 gtagtgtttaaattgcagtatttaattttaaatatttgataatga 55432189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 100 - 254
Target Start/End: Original strand, 12964860 - 12965018
Alignment:
Q  100 ttggaagaaaaattggaa-gattaaacatcaactaattatactttgatataatattatctgaattg-aaaaaatagagtatg--ggtcccacataaaatg 195  Q
    ||||| |||||||| ||| ||||||||| ||| ||||||||||||||| |||| ||   ||||||| |||||||||||| ||  |||||||||||||||     
T  12964860 ttggatgaaaaattagaatgattaaacaccaagtaattatactttgatttaatgttgcatgaattgaaaaaaatagagtgtggtggtcccacataaaat- 12964958  T
Q  196 gaacacacacattagcaatgtttaaattgaggtatttaatttt-aaatacttgataatga 254  Q
     |||||| || |||| | ||||||||||| ||||||||||||| ||||| ||||||||||    
T  12964959 aaacacaaactttagtagtgtttaaattgcggtatttaattttaaaatatttgataatga 12965018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 32473106 - 32473173
Alignment:
Q  84 gaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataat 151  Q
    ||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  32473106 gaacattgatgtgatattggatgaaaaattggaagattaaacaccaagtaattatactttgatctaat 32473173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 73 - 242
Target Start/End: Complemental strand, 3426215 - 3426047
Alignment:
Q  73 caaacctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaata 172  Q
    ||||||||||||||||||  |||||| |||||| | |||||  ||||||||||| ||| |||||||||||| || | || || | ||||||   ||||||    
T  3426215 caaacctgttggaacattagtgtgatgttggaaaataaatttaaagattaaacaccaagtaattatactttaatcttatgttgtgtgaatt---aaaata 3426119  T
Q  173 ga--gtatgggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaat 242  Q
    ||  ||  |||| ||||||||||| |||| |||||||||| | |||||||| || |||||| ||||||||||    
T  3426118 gaatgtgggggtaccacataaaatagaactcacacattagtagtgtttaaactgcggtattcaattttaaat 3426047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 312
Target Start/End: Original strand, 12111605 - 12111769
Alignment:
Q  133 aattatactttgatataatattatctgaattgaaaaaatagagtatgggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtattt 232  Q
    ||||||||||||||||| |  | | |||||||||||| || ||| |||||| |||||||||| ||||||||      | ||||||||||||  |||||||    
T  12111605 aattatactttgatatagt--tgtgtgaattgaaaaagtaaagtgtgggtctcacataaaatagaacacacc-----gtaatgtttaaatttcggtattt 12111697  T
Q  233 aattttaaatacttgataatgagnnnnnnntaatagtaattattactattatttttattcgtgaatatcacttcccataa 312  Q
    |||||||||| |||||||||||        ||||||||||||||      ||||||||||||||||||||||||||||||    
T  12111698 aattttaaatgcttgataatga--taaaaataatagtaattatt------atttttattcgtgaatatcacttcccataa 12111769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 7860767 - 7860686
Alignment:
Q  159 gaattgaaaaaatagagtatgg--gtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaatttt 238  Q
    |||||||||||||||||| |||  |||||||||||||| ||||||||||||||  | ||||||||||  |||||||||||||    
T  7860767 gaattgaaaaaatagagtgtggaggtcccacataaaatagaacacacacattaatagtgtttaaattatggtatttaatttt 7860686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 29351263 - 29351189
Alignment:
Q  180 ggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    |||||||||||||||  |||||||||||||  | ||||||||| | ||||||||||||||||||  |||||||||    
T  29351263 ggtcccacataaaataaaacacacacattattagtgtttaaatagtggtatttaattttaaatatctgataatga 29351189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 38891222 - 38891139
Alignment:
Q  112 ttggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatg-ggtcccacataaaat 194  Q
    ||||||||||||||| | | |||||| |||||||| |||| || | ||||||||||||||| ||| || |||||||||||||||    
T  38891222 ttggaagattaaacaccgagtaattaaactttgatctaatgttttgtgaattgaaaaaatatagtgtgaggtcccacataaaat 38891139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 3419938 - 3419893
Alignment:
Q  279 tattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    ||||||||||||||| |||||||||||| |||||||||||| ||||    
T  3419938 tattatttttattcgagaatatcacttcgcataaatttagcatatg 3419893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 317
Target Start/End: Complemental strand, 55432172 - 55432134
Alignment:
Q  279 tattatttttattcgtgaatatcacttcccataaattta 317  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  55432172 tattatttttattcgagaatatcatttcccataaattta 55432134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 79 - 324
Target Start/End: Original strand, 17974308 - 17974546
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| |||| || | ||||||||||||||||||| |    
T  17974308 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacatcaaataattatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 17974407  T
Q  179 gg-gtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatac-ttgataatgagnnnnnnntaatagtaattatt 276  Q
    || |||||||||||||| ||||||||||||||| | ||||||||||| ||||||||||||||||||| ||||||||||        ||| | ||||| |     
T  17974408 ggtgtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatactttgataatga--------taaaaataattgta 17974499  T
Q  277 actattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    | ||||| ||||||||| ||||||||||| ||||||||||||| ||||    
T  17974500 attatta-ttttattcgagaatatcactttccataaatttagcttatg 17974546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 78 - 317
Target Start/End: Complemental strand, 12798070 - 12797836
Alignment:
Q  78 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagta 177  Q
    ||||||||| |||  |||||| ||||||||||||||||||||||||||| ||| ||||||||||||||| |||| || | |||||||||||||||||||     
T  12798070 ctgttggaatattagtgtgatgttggaagaaaaattggaagattaaacaccaaataattatactttgatctaatgttgtgtgaattgaaaaaatagagtg 12797971  T
Q  178 tg---ggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaatta 274  Q
    ||   ||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||        ||||||||||      
T  12797970 tgggaggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatacttgataatga--taaaaataatagtaat-- 12797875  T
Q  275 ttactattatttttattcgtgaatatcacttcccataaattta 317  Q
        ||||||||||||||| ||||||||||||| |||||||||    
T  12797874 ----tattatttttattcgagaatatcacttcctataaattta 12797836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 78 - 254
Target Start/End: Complemental strand, 18345556 - 18345378
Alignment:
Q  78 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagta 177  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||| |||| || | |||||| ||||||||||||     
T  18345556 ctgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattaaaaaaatagagtg 18345457  T
Q  178 t--gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    |  |||||||||||||||| ||||||||||||||| | ||||||||||| ||||||||||||||||||||| |||||||    
T  18345456 tgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttaataatga 18345378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 79 - 254
Target Start/End: Original strand, 17967921 - 17968098
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| |||| || | |||||| |||||||||||| |    
T  17967921 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacatcaagtaattatactttgatctaatgttgtgtgaattaaaaaaatagagtgt 17968020  T
Q  179 -gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatac-ttgataatga 254  Q
     |||||||||||||||| ||||||||| ||||| | ||||||||||| ||||||||||||||||||| ||||||||||    
T  17968021 ggggtcccacataaaatagaacacacatattagtagtgtttaaattgtggtatttaattttaaatactttgataatga 17968098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 79 - 324
Target Start/End: Complemental strand, 30652053 - 30651815
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||||||||||||||| ||||| ||||||||| ||||||||||| ||| ||||||||||||||| |||| || | ||||||||||||||||||| |    
T  30652053 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 30651954  T
Q  179 --gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattatt 276  Q
      ||||||| |||||||| ||||||||||||||| | ||||||||||| ||||||||||||||||||||||||| |||        ||||||||||||||    
T  30651953 gggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgatagtga--taaaaataatagtaattatt 30651856  T
Q  277 actattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    |       ||||||||| ||||||||||| ||||||||||||| ||||    
T  30651855 a-------ttttattcgagaatatcactttccataaatttagcttatg 30651815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 79 - 254
Target Start/End: Original strand, 25496341 - 25496518
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    ||||| ||||||  |||||| |||||| | |||||||||||||||||| ||| ||||||||||||||| ||||||| | ||||||||||||||||||| |    
T  25496341 tgttgtaacatttgtgtgatgttggaaaataaattggaagattaaacaccaaataattatactttgatctaatattgtgtgaattgaaaaaatagagtgt 25496440  T
Q  179 gg--gtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    ||  |||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||    
T  25496441 ggaggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatacttgataatga 25496518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 79 - 324
Target Start/End: Original strand, 19891464 - 19891700
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||| ||  ||||||||||||||| |||| || | ||||||||||||||||| | |    
T  19891464 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccatgtaattatactttgatctaatcttgtgtgaattgaaaaaatagaatgt 19891563  T
Q  179 gg--gtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattatt 276  Q
    ||  |||||||||||||| ||  ||||||||||  | ||||||||||| |||||||||||||||||||||||||||||        ||||||||||||||    
T  19891564 gggagtcccacataaaataga--acacacattattagtgtttaaattgtggtatttaattttaaatacttgataatga--taaaaataatagtaattatt 19891659  T
Q  277 actattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    |       ||||||||| ||||||||||| ||||||||||||| ||||    
T  19891660 a-------ttttattcgagaatatcactttccataaatttagcttatg 19891700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 79 - 254
Target Start/End: Original strand, 9184374 - 9184552
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattg--aaaaaatagagt 176  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||| ||| |||||| |||||||| |||| || | |||||||  ||||||||||||    
T  9184374 tgttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaaataattaaactttgatctaatgttgtgtgaattgaaaaaaaatagagt 9184473  T
Q  177 at--gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
     |  |||||||||||||||| ||||||||||||||| | ||||||||||| ||||||||| |||||||||||||||||||    
T  9184474 gtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaa-tttaaatacttgataatga 9184552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 78 - 254
Target Start/End: Original strand, 9179682 - 9179861
Alignment:
Q  78 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattg--aaaaaatagag 175  Q
    ||||||||| |||||||||||  |||| ||||||||||||||||||||| ||| ||||||||||||||| |||| || | |||||||  |||||||||||    
T  9179682 ctgttggaatattgatgtgatggtggatgaaaaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaaaatagag 9179781  T
Q  176 tat--gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    | |  |||||||||||||||| ||||||||||||||| | ||||||||||| ||||||||| |||||||||||||||||||    
T  9179782 tgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaa-tttaaatacttgataatga 9179861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 79 - 324
Target Start/End: Original strand, 25477246 - 25477485
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    ||||||||||||  |||||| ||| || | |||||||||||||||||||||| ||||||||||||||| |||| || |  ||||| |||||||||||| |    
T  25477246 tgttggaacattagtgtgatgttgaaaaataaattggaagattaaacatcaaataattatactttgatttaatgttgtgcgaattaaaaaaatagagtgt 25477345  T
Q  179 gg--gtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattatt 276  Q
    ||  |||  ||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||        ||||||||||        
T  25477346 ggtggtcttacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatacttgataatga--taaaaataatagtaat---- 25477439  T
Q  277 actattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
      ||||||||||||||| ||||||||||| | ||||||||||| ||||    
T  25477440 --tattatttttattcgagaatatcactttctataaatttagcttatg 25477485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 78 - 319
Target Start/End: Complemental strand, 29678818 - 29678583
Alignment:
Q  78 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagta 177  Q
    |||||| ||||||  |||||| ||||||||||||||||||||||||| |  ||  ||||||| |||||| |||| || | |||||||||||||||||||     
T  29678818 ctgttgcaacattagtgtgatgttggaagaaaaattggaagattaaatactaaggaattatattttgatctaatgttgtgtgaattgaaaaaatagagtg 29678719  T
Q  178 tggg--tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattat 275  Q
    | ||  ||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||| ||||||||||        ||||||||||       
T  29678718 tagggatcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatatttgataatga--taaaaataatagtaat--- 29678624  T
Q  276 tactattatttttattcgtgaatatcacttcccataaatttagc 319  Q
       |||||||||||||||  ||||||||||||||||||||||||    
T  29678623 ---tattatttttattcgaaaatatcacttcccataaatttagc 29678583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 81 - 254
Target Start/End: Complemental strand, 19897085 - 19896912
Alignment:
Q  81 ttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaataga--gtat 178  Q
    ||||||||||| | |||| |||||||| ||| |||||||||||| ||||| |||||||| ||||||||||| || | |||||||||||||||||  ||      
T  19897085 ttggaacattggtatgatgttggaagagaaaatggaagattaaatatcaagtaattatattttgatataatgttgtgtgaattgaaaaaatagagcgtgg 19896986  T
Q  179 gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    |||||||||||||||| ||  ||||||||||| | ||||||||||| |||||||||||||||||| ||||||||||    
T  19896985 gggtcccacataaaataga--acacacattagtagtgtttaaattgcggtatttaattttaaatatttgataatga 19896912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 79 - 254
Target Start/End: Complemental strand, 12361384 - 12361211
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    ||||||||||||  |||| | |||||| | |||||||||||||||||| ||| ||||||||||||||| |||| || | ||||||||||||||||| | |    
T  12361384 tgttggaacattagtgtggtgttggaaaataaattggaagattaaacaccaaataattatactttgatctaatgttgtgtgaattgaaaaaatagaatgt 12361285  T
Q  179 gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    |||| ||||||||||| ||  | ||||||||| | ||||||||||| |||||||||||||||||| ||||||||||    
T  12361284 gggttccacataaaataga--agacacattagtagtgtttaaattgtggtatttaattttaaataattgataatga 12361211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 81 - 239
Target Start/End: Original strand, 20101609 - 20101769
Alignment:
Q  81 ttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat-- 178  Q
    |||||| |||| |||||| ||||||||||||||||||||||||||| ||| ||||||||||||||| |||| || | ||||||||||||||||||| |      
T  20101609 ttggaaaattggtgtgatgttggaagaaaaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtcg 20101708  T
Q  179 gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaatttta 239  Q
    |||| ||||||||||| ||||| ||||||||| | | ||||||||   |||||||||||||    
T  20101709 gggttccacataaaatagaacatacacattagtagtatttaaattactgtatttaatttta 20101769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 79 - 317
Target Start/End: Original strand, 24536973 - 24537212
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatatta-------tctgaattgaaaaaat 171  Q
    ||||||||||||| ||| || ||||||||||||||||||||||||||| ||| |||| || ||||||| |||| ||        | ||||||||||||||    
T  24536973 tgttggaacattggtgttatgttggaagaaaaattggaagattaaacaccaattaatcattctttgatctaatgtttaatgttgtgtgaattgaaaaaat 24537072  T
Q  172 agagtatggg--tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagt 269  Q
    ||||| ||||  |||||||||||||  |||||| ||||||| | |||||||| |  |||||||||||||||||||||||||||||        |||||||    
T  24537073 agagtgtgggggtcccacataaaatataacacatacattagtagtgtttaaactacggtatttaattttaaatacttgataatga--taaaaataatagt 24537170  T
Q  270 aattattactattatttttattcgtgaatatcacttcccataaattta 317  Q
    |||      |||||||||||||||||||||||| |||||||| |||||    
T  24537171 aat------tattatttttattcgtgaatatcatttcccatacattta 24537212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 1933965 - 1934092
Alignment:
Q  78 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagta 177  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||| ||| ||||||||||||||| |||| || | |||||||||||||||||||     
T  1933965 ctgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtg 1934064  T
Q  178 tg--ggtcccacataaaatggaacacac 203  Q
     |  ||||||||||||||| ||||||||    
T  1934065 gggaggtcccacataaaatagaacacac 1934092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 40846622 - 40846714
Alignment:
Q  162 ttgaaaaaatagagtatggg--tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataat 252  Q
    ||||||||||||||| ||||  ||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||    
T  40846622 ttgaaaaaatagagtgtggggatcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataat 40846714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 254
Target Start/End: Complemental strand, 28604191 - 28604048
Alignment:
Q  112 ttggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatg-ggtcccacataaaatggaacacacacattag 210  Q
    ||||||||||||||| ||| |||||| | |||||| || | || | |||||||||||||||||||||| ||||||||||||||| ||  ||||| ||||     
T  28604191 ttggaagattaaacaccaagtaattaaattttgatctagtgttgtgtgaattgaaaaaatagagtatgcggtcccacataaaatagattacacagattat 28604092  T
Q  211 caatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    || ||||||||| | | ||||||||||||||||| |||||||||    
T  28604091 cagtgtttaaatagtgatatttaattttaaatacatgataatga 28604048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 158 - 253
Target Start/End: Original strand, 15446319 - 15446416
Alignment:
Q  158 tgaattgaaaaaatagagtat-gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaa-ttttaaatacttgataatg 253  Q
    ||||||||||||||||||| | |||||||||||||||| ||||||| ||||||| | ||||||||||| ||||||||| |||||||||||||||||||    
T  15446319 tgaattgaaaaaatagagtgttgggtcccacataaaatagaacacatacattagtagtgtttaaattgtggtatttaatttttaaatacttgataatg 15446416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 254
Target Start/End: Complemental strand, 31329168 - 31329024
Alignment:
Q  112 ttggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatgg--gtcccacataaaatggaacacacacatta 209  Q
    ||||||||||||||| ||| | |||| |||||||| || | || | ||||||||||||||||||| |||  ||||||| |||||| ||||| |||| |||    
T  31329168 ttggaagattaaacaccaagttattaaactttgatctagtgttgtgtgaattgaaaaaatagagtgtggaggtcccacgtaaaatagaacaaacacgtta 31329069  T
Q  210 gcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    | | ||||||||| | ||||||||||||||||||| |||||||||    
T  31329068 gtagtgtttaaatagtggtatttaattttaaatacatgataatga 31329024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 254
Target Start/End: Complemental strand, 31335889 - 31335745
Alignment:
Q  112 ttggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatgg--gtcccacataaaatggaacacacacatta 209  Q
    ||||||||||||||| ||| | |||| |||||||| || | || | ||||||||||||||||||| |||  ||||||| |||||| ||||| |||| |||    
T  31335889 ttggaagattaaacaccaagttattaaactttgatctagtgttgtgtgaattgaaaaaatagagtgtggaggtcccacgtaaaatagaacaaacacgtta 31335790  T
Q  210 gcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    | | ||||||||| | ||||||||||||||||||| |||||||||    
T  31335789 gtagtgtttaaatagtggtatttaattttaaatacatgataatga 31335745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 254
Target Start/End: Original strand, 42925666 - 42925808
Alignment:
Q  112 ttggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatg--ggtcccacataaaatggaacacacacatta 209  Q
    ||||||||||||||| ||| |||||| |||||||| || | || | ||||||||||||||||||| ||  |||||||| |||||| ||  ||||||||||    
T  42925666 ttggaagattaaacaccaagtaattaaactttgatctagtgttgtgtgaattgaaaaaatagagtgtggaggtcccacgtaaaataga--acacacatta 42925763  T
Q  210 gcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    | | ||||||||| | | ||||||||||||||||| |||||||||    
T  42925764 gtagtgtttaaatagtgatatttaattttaaatacctgataatga 42925808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 44630508 - 44630582
Alignment:
Q  180 ggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    ||||||||||||||| ||||||||||||||| | ||||||||| | ||| ||||||||||||||| |||||||||    
T  44630508 ggtcccacataaaatagaacacacacattagtattgtttaaatagtggtgtttaattttaaatacctgataatga 44630582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 40846478 - 40846537
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattat 138  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||| ||| |||||||    
T  40846478 tgttggaacattggtgtgatgttggaagaaaaattggaagattaaacaccaaataattat 40846537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 158 - 254
Target Start/End: Original strand, 25637801 - 25637898
Alignment:
Q  158 tgaattgaaaaaatagag--tatgggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaa-ttttaaatacttgataatga 254  Q
    |||||||||||| |||||  | ||||||||||||||||| ||  ||||||||||| | |||||||| || ||||||||| ||||||||||||||||||||    
T  25637801 tgaattgaaaaattagagattgtgggtcccacataaaataga--acacacattagtagtgtttaaactgcggtatttaatttttaaatacttgataatga 25637898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 317
Target Start/End: Original strand, 12002056 - 12002094
Alignment:
Q  279 tattatttttattcgtgaatatcacttcccataaattta 317  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  12002056 tattatttttattcgtggatatcacttcccataaattta 12002094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 34495183 - 34495240
Alignment:
Q  197 aacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    |||||||| ||||  | |||||||||||  ||||||||||||||||||||||||||||    
T  34495183 aacacacatattattagtgtttaaattgcagtatttaattttaaatacttgataatga 34495240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 20103260 - 20103305
Alignment:
Q  279 tattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    ||||||||||| | ||||||||||||| ||||||||||||| ||||    
T  20103260 tattatttttagtggtgaatatcactttccataaatttagcttatg 20103305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 318
Target Start/End: Original strand, 40846735 - 40846772
Alignment:
Q  281 ttatttttattcgtgaatatcacttcccataaatttag 318  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  40846735 ttatttttatttgtgaatatcacttcctataaatttag 40846772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 12361196 - 12361152
Alignment:
Q  280 attatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    |||||||||||||| || |||||||| ||||||||||||| ||||    
T  12361196 attatttttattcgagagtatcactttccataaatttagcttatg 12361152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 82 - 318
Target Start/End: Complemental strand, 30313 - 30083
Alignment:
Q  82 tggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaataga--gtatg 179  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||| ||| |||||||| |||||| |||| || | |||||||||||||||||  ||| |    
T  30313 tggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaagtaattatattttgatctaatgttgtgtgaattgaaaaaatagagtgtagg 30214  T
Q  180 ggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattattact 279  Q
    | ||||||||||||| ||||||||||||||| | ||||||||||| ||||||||||||||| ||| |||||||||        ||||||||||      |    
T  30213 gatcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaactacatgataatga--taaaaataatagtaat------t 30122  T
Q  280 attatttttattcgtgaatatcacttcccataaatttag 318  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  30121 attatttttattcgagaatatcacttcccataaatttag 30083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 112 - 252
Target Start/End: Complemental strand, 26547 - 26405
Alignment:
Q  112 ttggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatgg--gtcccacataaaatggaacacacacatta 209  Q
    ||||||||||||||| ||| |||||| ||||| || ||   || | |||||||||||||||||||  ||  |||||||||||||| ||||||||||||||    
T  26547 ttggaagattaaacaccaaataattaaactttcatctagagttgtgtgaattgaaaaaatagagtgcggaggtcccacataaaatagaacacacacatta 26448  T
Q  210 gcaatgtttaaattgaggtatttaattttaaatacttgataat 252  Q
    | | ||||||||| ||||||||||||||||||||| |||||||    
T  26447 gtagtgtttaaatagaggtatttaattttaaatacctgataat 26405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 79 - 254
Target Start/End: Complemental strand, 8248 - 8071
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||||||||||| ||| ||||| || |||||||||||||||||| ||| ||||||||||||||| |||| || | ||||||||||||||||||| |    
T  8248 tgttggaacattgatgcgatgttggatgataaattggaagattaaacaccaagtaattatactttgatttaatgttgtgtgaattgaaaaaatagagtgt 8149  T
Q  179 --gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
      ||||||||||||| || ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||    
T  8148 gggggtcccacataagatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatga 8071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 79 - 254
Target Start/End: Original strand, 17963515 - 17963692
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||||| ||| ||| ||||||||||| ||||  | | ||||||||||||||||||| |    
T  17963515 tgtttgaacattgatgtgatgttggatgaaaaattggaagattaaacaccaagtaactatactttgatctaatgatgtgtgaattgaaaaaatagagtgt 17963614  T
Q  179 ggg--tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    |||  ||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||    
T  17963615 gggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatga 17963692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 100 - 324
Target Start/End: Original strand, 12405338 - 12405556
Alignment:
Q  100 ttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatg--ggtcccacataaaatgga 197  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||| || | | |||| |||||||||||| ||  | || || ||||||| ||    
T  12405338 ttggaagaaaaattggaagattaaacatcaactaattatattttgatctaatgttgtgttaattaaaaaaatagagtgtggagatcacaaataaaataga 12405437  T
Q  198 acacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattattactattatttttattcgtgaa 297  Q
    ||||||||||||| | || ||||||||||||| ||||||||||||||||||||||||        ||||||||||      |||||||||||||||||||    
T  12405438 acacacacattagtagtgattaaattgaggtacttaattttaaatacttgataatga--taaaaataatagtaat------tattatttttattcgtgaa 12405529  T
Q  298 tatcacttcccataaatttagcctatg 324  Q
    |||||||||||||||||||||| ||||    
T  12405530 tatcacttcccataaatttagcttatg 12405556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 79 - 254
Target Start/End: Original strand, 16835118 - 16835296
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaa-tagagta 177  Q
    |||||||||||||||||||| ||||| ||||||||| ||||||||||| ||| ||| ||||||||||| |||| || | |||||| |||||| ||||||     
T  16835118 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaagtaaatatactttgatctaatgttgtgtgaattaaaaaaaatagagtg 16835217  T
Q  178 tggg--tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    ||||  ||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||    
T  16835218 tgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatga 16835296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 78 - 324
Target Start/End: Original strand, 11533658 - 11533897
Alignment:
Q  78 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagta 177  Q
    |||||||||||||  |||||| |||||  | ||||| |||||||||||| ||| |||||||| |||||| |||| || | ||||||||||||||| |||     
T  11533658 ctgttggaacattagtgtgatgttggagaataaattagaagattaaacaccaagtaattatagtttgatctaatgttgtgtgaattgaaaaaataaagtg 11533757  T
Q  178 tggg-tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattatt 276  Q
    |||| ||||||||||||| ||||||||||||| | | ||||||||||| |||||||||||||||||||||||||||||        ||| | ||||| |     
T  11533758 tggggtcccacataaaatagaacacacacattggtagtgtttaaattgcggtatttaattttaaatacttgataatga--------taaaaataattgta 11533849  T
Q  277 actattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    | ||||||||||||||| ||||||||||| ||||||||||||| ||||    
T  11533850 attattatttttattcgagaatatcactttccataaatttagcttatg 11533897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 78 - 324
Target Start/End: Original strand, 11559168 - 11559407
Alignment:
Q  78 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagta 177  Q
    |||||||||||||  |||||| |||||  | ||||| |||||||||||| ||| |||||||| |||||| |||| || | ||||||||||||||| |||     
T  11559168 ctgttggaacattagtgtgatgttggagaataaattagaagattaaacaccaagtaattatagtttgatctaatgttgtgtgaattgaaaaaatacagtg 11559267  T
Q  178 tggg-tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattatt 276  Q
    |||| ||||||||||||| ||||||||||||| | | ||||||||||| |||||||||||||||||||||||||||||        ||| | ||||| |     
T  11559268 tggggtcccacataaaatagaacacacacattggtagtgtttaaattgcggtatttaattttaaatacttgataatga--------taaaaataattgta 11559359  T
Q  277 actattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    | ||||||||||||||| ||||||||||| ||||||||||||| ||||    
T  11559360 attattatttttattcgagaatatcactttccataaatttagcttatg 11559407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 81 - 324
Target Start/End: Original strand, 20747256 - 20747493
Alignment:
Q  81 ttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat-- 178  Q
    ||||||||||| ||| |  || |||| ||||||||||||||||||||||| ||||||||||||||| |||| || | ||||||||||||||||||| |      
T  20747256 ttggaacattggtgttaagtttgaaggaaaattggaagattaaacatcaagtaattatactttgatttaatgttgtgtgaattgaaaaaatagagtgtgg 20747355  T
Q  179 gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattattac 278  Q
    |||||| ||||||||| ||||  ||||||||| | ||||||||||| |||||||||||||||||||||||||| ||         |||||||||          
T  20747356 gggtcctacataaaatagaacttacacattagtagtgtttaaattgcggtatttaattttaaatacttgataacga--taaaaacaatagtaat------ 20747447  T
Q  279 tattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  20747448 tattatttttattcgtgaatatcacttcccataaatttagcatatg 20747493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 79 - 324
Target Start/End: Original strand, 11569650 - 11569887
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    ||||||||||||  |||||| ||| || | ||||| |||||||||||| ||| ||||||||||||||| |||| || | ||||||||||||||||||| |    
T  11569650 tgttggaacattagtgtgatgttgcaa-ataaattagaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 11569748  T
Q  179 ggg-tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattatta 277  Q
    ||| ||||||||||||| ||||||||||||| | | ||||||||||| |||||||||||||||||||||||||||||        ||||||||||         
T  11569749 ggggtcccacataaaatagaacacacacattggaagtgtttaaattgcggtatttaattttaaatacttgataatga--taaaaataatagtaat----- 11569841  T
Q  278 ctattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
     ||||||||||||||| ||||||||||  ||||||||||||| ||||    
T  11569842 -tattatttttattcgagaatatcactgtccataaatttagcttatg 11569887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 100 - 254
Target Start/End: Complemental strand, 17600495 - 17600342
Alignment:
Q  100 ttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat--gggtcccacataaaatgga 197  Q
    ||||||||||||||||||||||||||| ||| |||| |||||||||| |||| || | ||||||||||||||||||| |  |||||||||||||||| ||    
T  17600495 ttggaagaaaaattggaagattaaacaccaagtaatcatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgagggtcccacataaaataga 17600396  T
Q  198 acacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    ||||| |||||||   ||||||||||| |||||||||||||||||| ||||||||||    
T  17600395 acacaaacattag---tgtttaaattgtggtatttaattttaaataattgataatga 17600342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 100 - 254
Target Start/End: Original strand, 6406838 - 6406994
Alignment:
Q  100 ttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatggg--tcccacataaaatgga 197  Q
    ||||| ||||||||| ||||||||||| ||| ||||||||||||||| || | || | ||||||||||||||||||| ||||  |||  |||||||| ||    
T  6406838 ttggatgaaaaattgaaagattaaacaccaagtaattatactttgatctattgttgtgtgaattgaaaaaatagagtgtgggggtcctgcataaaataga 6406937  T
Q  198 acacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||    
T  6406938 acacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatga 6406994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 81 - 319
Target Start/End: Original strand, 19994344 - 19994575
Alignment:
Q  81 ttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatgg 180  Q
    ||||| ||||| |||||| |||||||||||||||||||||||||||  |  |||||||||||| ||  ||| |||| |||||| |||||||||||| |||    
T  19994344 ttggatcattggtgtgatgttggaagaaaaattggaagattaaacactaggtaattatactttaatcgaatgttatgtgaatt-aaaaaatagagtgtgg 19994442  T
Q  181 g--tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattattac 278  Q
    |  |||||| |||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||| ||||        ||||||||||          
T  19994443 gggtcccacgtaaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatacttgattatga--taaaaataatagtaat------ 19994534  T
Q  279 tattatttttattcgtgaatatcacttcccataaatttagc 319  Q
    ||||||||||||||||||||||||||| ||| | |||||||    
T  19994535 tattatttttattcgtgaatatcacttgccaaacatttagc 19994575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 84 - 254
Target Start/End: Original strand, 22694347 - 22694517
Alignment:
Q  84 gaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatgggtc 183  Q
    |||||||| |||||| ||||||||||||||||||||||||||| ||| ||||||||||||||| |||| || | ||||||||||||||||  |   ||||    
T  22694347 gaacattggtgtgatgttggaagaaaaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagtttggaggtc 22694446  T
Q  184 ccacataaaatggaacacacacat-tagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    ||||||||||| |||||||||||| ||| | |||||||||||  |||||||||| |||| ||||||||||||    
T  22694447 ccacataaaatagaacacacacatctag-agtgtttaaattgccgtatttaattataaaaacttgataatga 22694517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 74 - 319
Target Start/End: Original strand, 2699066 - 2699306
Alignment:
Q  74 aaacctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaa-ata 172  Q
    ||||||||||||||||   | |||| |||||| | |||||||||||||||||||||| |||||||||||| || |||| || | ||||| | |||| |||    
T  2699066 aaacctgttggaacatcagtatgatgttggaaaataaattggaagattaaacatcaagtaattatactttaatctaatgttgtgtgaatggtaaaatata 2699165  T
Q  173 gagtatggg--tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagta 270  Q
    |||| ||||  ||||||||||||| |||  |||||||||| | ||||||||||| |||||||||||||||||||| |||||| |        ||||||||    
T  2699166 gagtgtgggggtcccacataaaatagaattcacacattagtagtgtttaaattgcggtatttaattttaaatactagataataa--taaaaataatagta 2699263  T
Q  271 attattactattatttttattcgtgaatatcacttcccataaatttagc 319  Q
    ||      ||||||||||||||| |||||||||||||||||||||||||    
T  2699264 at------tattatttttattcgagaatatcacttcccataaatttagc 2699306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 136 - 324
Target Start/End: Original strand, 25313487 - 25313671
Alignment:
Q  136 tatactttgatataatattatctgaattgaaaaaatagagtatg--ggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtattta 233  Q
    |||||||||||||||| || | ||||||||||||||||||| ||  |||| |||||||||| ||||||| | ||||| | ||||||||||| ||||||||    
T  25313487 tatactttgatataatgttttatgaattgaaaaaatagagtgtgcgggtcacacataaaatagaacacatatattagtagtgtttaaattgcggtattta 25313586  T
Q  234 attttaaatacttgataatgagnnnnnnntaatagtaattattactattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    |||||||||||||||||||||        ||||||||||      ||||||||||||||| ||||||||||||| ||||||||||| ||||    
T  25313587 attttaaatacttgataatgataaaaaaataatagtaat------tattatttttattcgagaatatcacttcctataaatttagcttatg 25313671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 136 - 324
Target Start/End: Original strand, 26200981 - 26201165
Alignment:
Q  136 tatactttgatataatattatctgaattgaaaaaatagagtatg--ggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtattta 233  Q
    |||||||||||||||| || | ||||||||||||||||||| ||  |||| |||||||||| ||||||| | ||||| | ||||||||||| ||||||||    
T  26200981 tatactttgatataatgttttatgaattgaaaaaatagagtgtgcgggtcacacataaaatagaacacatatattagtagtgtttaaattgcggtattta 26201080  T
Q  234 attttaaatacttgataatgagnnnnnnntaatagtaattattactattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    |||||||||||||||||||||        ||||||||||      ||||||||||||||| ||||||||||||| ||||||||||| ||||    
T  26201081 attttaaatacttgataatgataaaaaaataatagtaat------tattatttttattcgagaatatcacttcctataaatttagcttatg 26201165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 84 - 254
Target Start/End: Original strand, 33686606 - 33686777
Alignment:
Q  84 gaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat-gggt 182  Q
    ||||||| ||||||| |||||| | |||||||||||||||||||||| ||||||||||||||| |||| || | ||||||||||||||||||| | ||||    
T  33686606 gaacattaatgtgatgttggaaaataaattggaagattaaacatcaaataattatactttgatctaattttgtgtgaattgaaaaaatagagtgtggggt 33686705  T
Q  183 cccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
     |||||||||||  |||  ||| ||||| | |||||||| || |||||||| ||||||||||||| ||||||    
T  33686706 tccacataaaataaaacttacaaattagtagtgtttaaactgtggtatttagttttaaatacttggtaatga 33686777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 79 - 324
Target Start/End: Original strand, 11612861 - 11613100
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatacttt--gatataatattatctgaattgaaaaaatagagt 176  Q
    |||||||||||||  ||||| ||||||| ||||||| || ||||||||| || ||||||||||||  ||| |||| |||| | |||||||||||||||||    
T  11612861 tgttggaacattg--gtgatgttggaaggaaaattgaaaaattaaacat-aagtaattatactttttgatctaatgttatataaattgaaaaaatagagt 11612957  T
Q  177 atgg--gtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaatta 274  Q
     | |  ||||||||||||||  |||||||||||||| | ||||||||||  |||||||||||||||||||||||||||||        ||||||| ||||    
T  11612958 gttgaggtcccacataaaataaaacacacacattagtagtgtttaaatttcggtatttaattttaaatacttgataatga--taaaaataatagtgatta 11613055  T
Q  275 ttactattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
         |||| |||||||||||||||||| || ||||||||||||| ||||    
T  11613056 -----attaattttattcgtgaatatcattttccataaatttagcttatg 11613100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 112 - 243
Target Start/End: Complemental strand, 12690074 - 12689942
Alignment:
Q  112 ttggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatgg-gtcccacataaaatggaacacacacattag 210  Q
    |||||| |||||||| ||| | |||| |||||||| || | || | ||||||||||||||||||| ||| |||||||||||||| |||||||||||||||    
T  12690074 ttggaaaattaaacaccaaattattaaactttgatctagtgttgtgtgaattgaaaaaatagagtgtggagtcccacataaaatagaacacacacattag 12689975  T
Q  211 caatgtttaaattgaggtatttaattttaaata 243  Q
     | ||||||||| | ||||||||||||||||||    
T  12689974 tagtgtttaaatagcggtatttaattttaaata 12689942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 81 - 241
Target Start/End: Complemental strand, 11429094 - 11428933
Alignment:
Q  81 ttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat-- 178  Q
    |||||||||||||||  | ||||| ||||||||||||||||||||| ||  ||||||||||||||| |||| ||   ||||||||||||||||||| |      
T  11429094 ttggaacattgatgtacttttggatgaaaaattggaagattaaacaccagataattatactttgatctaatgttgcgtgaattgaaaaaatagagtgtgg 11428995  T
Q  179 gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaa 241  Q
    ||||||||||| |||| || |||||||||| | | | |||||| || ||| ||||||||||||    
T  11428994 gggtcccacattaaatagagcacacacatttgtagtatttaaactgcggt-tttaattttaaa 11428933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 248
Target Start/End: Original strand, 12797772 - 12797914
Alignment:
Q  112 ttggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaataga--gtatgggtcccacataaaatgga----acacacac 205  Q
    ||||||||||||||| ||| |||||| |||||||| || | || | |||||||||||||||||  || ||||||||||||||||| ||    ||||||||    
T  12797772 ttggaagattaaacaccaagtaattagactttgatctagtgttgtgtgaattgaaaaaatagagtgtgtgggtcccacataaaatagaaaacacacacac 12797871  T
Q  206 attagcaatgtttaaattgaggtatttaattttaaatacttga 248  Q
    | ||| | ||||||||| | |||||||||||||||||||||||    
T  12797872 actagtagtgtttaaatagtggtatttaattttaaatacttga 12797914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 324
Target Start/End: Complemental strand, 5857022 - 5856885
Alignment:
Q  179 gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattattac 278  Q
    |||||||||||||| | ||||| ||||||||| | ||||||||||| |||||||||||||||||| ||||||||||        ||||||||||          
T  5857022 gggtcccacataaactagaacatacacattagtagtgtttaaattgcggtatttaattttaaataattgataatga--taaaaataatagtaat------ 5856931  T
Q  279 tattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    | ||||||||||||| ||||||||||||||| ||||||||| ||||    
T  5856930 tgttatttttattcgagaatatcacttcccaaaaatttagcttatg 5856885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 161 - 254
Target Start/End: Complemental strand, 22610568 - 22610473
Alignment:
Q  161 attgaaaaaatagagtatgg--gtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    |||||||||||||| | |||  || |||||||||||  |||||||||||||| | ||||||||||  |||||||||||||||||||||||||||||    
T  22610568 attgaaaaaatagattgtggcagttccacataaaataaaacacacacattagtagtgtttaaattttggtatttaattttaaatacttgataatga 22610473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 116 - 254
Target Start/End: Complemental strand, 19674874 - 19674735
Alignment:
Q  116 aagattaaacatcaactaattatactttgatataatattatctgaattg-aaaaaatagagtatgggtcccacataaaatggaacacacacattagcaat 214  Q
    ||||||||||| ||| |||||| |||||||| || | || | ||||||| ||||||||| ||  |||||| ||||||||| |||||||||||| || | |    
T  19674874 aagattaaacaccaaataattaaactttgatctagtgttgtgtgaattggaaaaaatagtgtgggggtccgacataaaatagaacacacacatcagtagt 19674775  T
Q  215 gtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    ||||||||   | ||||||||||||||||| | |||||||    
T  19674774 gtttaaataatgatatttaattttaaatacctaataatga 19674735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 318
Target Start/End: Complemental strand, 17914628 - 17914498
Alignment:
Q  180 ggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattattact 279  Q
    ||||| ||||||||||||||||||||||||  | ||||| ||||  ||||||||||||||||||| |||| ||||        |||||| |||      |    
T  17914628 ggtcctacataaaatggaacacacacattaatagtgttttaattacggtatttaattttaaatacctgatgatga--taaaaataatagcaat------t 17914537  T
Q  280 attatttttattcgtgaatatcacttcccataaatttag 318  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  17914536 attatttttatttgtgaatatcacttcccataaatttag 17914498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 11428911 - 11428866
Alignment:
Q  279 tattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  11428911 tattatttttattcgtgaatatcacttcccataaatttagcttatg 11428866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 5857096 - 5857033
Alignment:
Q  81 ttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttga 145  Q
    ||||||||||  |||||| ||||||||||||||||||||||||||| ||| ||||||||||||||    
T  5857096 ttggaacattagtgtgatgttggaagaaaaattggaagattaaacaccaa-taattatactttga 5857033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 4156486 - 4156531
Alignment:
Q  279 tattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    ||||||||||||||| ||||||||||||| ||||||||||| ||||    
T  4156486 tattatttttattcgagaatatcacttccgataaatttagcttatg 4156531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 14509979 - 14509941
Alignment:
Q  214 tgtttaaattgaggtatttaattttaaatacttgataat 252  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  14509979 tgtttaaattgtggtatttaattttaaatacttaataat 14509941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 29891917 - 29891991
Alignment:
Q  78 ctgttggaacattgatgtgatcttggaagaaaa-attggaagattaaacatcaactaattatactttgatataat 151  Q
    ||||| |||||||| |||||| ||| ||||||| ||||||||||||||||  || ||||| ||||||||| ||||    
T  29891917 ctgttagaacattggtgtgatgttgaaagaaaaaattggaagattaaacacaaagtaattgtactttgatctaat 29891991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 22694518 - 22694559
Alignment:
Q  283 atttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    ||||||||||||||||||||||| ||||| ||||||| ||||    
T  22694518 atttttattcgtgaatatcacttaccatatatttagcttatg 22694559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 78 - 250
Target Start/End: Original strand, 40124850 - 40125024
Alignment:
Q  78 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagta 177  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||| ||| ||| ||||||||||| |||| || | |||||||||||||||||||     
T  40124850 ctgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaagtaaatatactttgatctaatgttgtgtgaattgaaaaaatagagtg 40124949  T
Q  178 t--gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgata 250  Q
    |  ||||||| |||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||    
T  40124950 tgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgata 40125024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 100 - 317
Target Start/End: Original strand, 38181260 - 38181471
Alignment:
Q  100 ttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatggg--tcccacataaaatgga 197  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||| |||| || | ||||||||||||||| ||| || |  ||||||||||||| ||    
T  38181260 ttggaagaaaaattggaacattaaacatcaagtaattatactttgatctaatgttgtgtgaattgaaaaaataaagtgtgagagtcccacataaaataga 38181359  T
Q  198 acacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattattactattatttttattcgtgaa 297  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||        ||||||||||      ||||||||||||||| |||    
T  38181360 acacacacattagtagtgtttaaattgcggtatttaattttaaatacttgataatga--taaaaataatagtaat------tattatttttattcgagaa 38181451  T
Q  298 tatcacttcccataaattta 317  Q
    || |||||||||||||||||    
T  38181452 taccacttcccataaattta 38181471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 93 - 317
Target Start/End: Complemental strand, 2966710 - 2966492
Alignment:
Q  93 tgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatg--ggtcccacata 190  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||| ||| || |||| ||||  |||||||||||||||||| ||  ||||||| |||    
T  2966710 tgtgatgttggaagaaaaattggaagattaaacatcaaataattatatttttatctaatgttatgggaattgaaaaaatagagtgtgagggtcccatata 2966611  T
Q  191 aaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattattactattatttttat 290  Q
    |||| ||||||||||||||| | ||||||||||| ||||||||||||||||||||| |||||||        | ||||||||      ||||||||||||    
T  2966610 aaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatacttaataatga--taaaaattatagtaat------tattatttttat 2966519  T
Q  291 tcgtgaatatcacttcccataaattta 317  Q
    ||||||||||||||||| |||||||||    
T  2966518 tcgtgaatatcacttcctataaattta 2966492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 79 - 254
Target Start/End: Complemental strand, 1808589 - 1808413
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    ||||||||||||  |||||| |||||| | |||||||||||||||||| ||| ||||||||||||||| |||| || | ||||||||||||||| ||| |    
T  1808589 tgttggaacattagtgtgatgttggaaaataaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatatagtgt 1808490  T
Q  179 ggg-tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    ||| ||||| ||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||| ||||||||||    
T  1808489 ggggtcccatataaaatagaacacacacattagaagtgtttaaattgcggtatttaattttaaatatttgataatga 1808413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 82 - 319
Target Start/End: Original strand, 15950528 - 15950766
Alignment:
Q  82 tggaacattgatgtgatcttggaagaaaaattggaagattaaacatc----aactaattatactttgatataatattatctgaattgaaaaaatagagta 177  Q
    ||||||||||||||||| ||||| |||||||||||||| |||||| |    || ||||||||||||||| |||| || | |||||||||||||||||||     
T  15950528 tggaacattgatgtgatgttggatgaaaaattggaagactaaacaccaagtaattaattatactttgatctaatgttgtgtgaattgaaaaaatagagtg 15950627  T
Q  178 tg--ggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga-gnnnnnnntaatagtaatta 274  Q
    ||  ||| ||||||||||| ||||||||||||||  | ||||||||||| ||||||||||||||||||||||||||||| |       ||||||||||      
T  15950628 tggaggtgccacataaaatagaacacacacattaatagtgtttaaattgcggtatttaattttaaatacttgataatgatgataaaaataatagtaat-- 15950725  T
Q  275 ttactattatttttattcgtgaatatcacttcccataaatttagc 319  Q
        ||||||||||||||| ||||||||||||||||| |||||||    
T  15950726 ----tattatttttattcgagaatatcacttcccatatatttagc 15950766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 78 - 254
Target Start/End: Original strand, 44924877 - 44925055
Alignment:
Q  78 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagta 177  Q
    |||||||||||||  |||||| |||||| | ||||||||||||||||||  ||  |||||||||||||| |||| || | |||||||||||| ||||||     
T  44924877 ctgttggaacattagtgtgatgttggaaaataaattggaagattaaacactaatcaattatactttgatctaatcttgtgtgaattgaaaaattagagtt 44924976  T
Q  178 tgg--gtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    |||  |||||||||||||| ||| ||||||||||| | ||||||||||| |||||||||||||||||||||||||||||    
T  44924977 tggaggtcccacataaaatagaaaacacacattagtagtgtttaaattgcggtatttaattttaaatacttgataatga 44925055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 79 - 254
Target Start/End: Original strand, 1909904 - 1910081
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    ||||||||||||  | |||| |||||| | |||||||||||||||||| ||| ||||||||||||||| |||| || | ||||||||||||||||||| |    
T  1909904 tgttggaacattagtatgatgttggaaaataaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 1910003  T
Q  179 gg--gtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    ||  ||||||||| |||| || | |||||||||| | ||||||||  | |||||||||||||||||||||||||||||    
T  1910004 ggatgtcccacatgaaatagagctcacacattagtagtgtttaaacagtggtatttaattttaaatacttgataatga 1910081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 79 - 254
Target Start/End: Original strand, 28559074 - 28559250
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||| |||||||| || || |||||||||||||||||||||||| ||| || ||||||||| || |||| || | |  || ||||||||||||| |    
T  28559074 tgttggaaaattgatgtaatgttcgaagaaaaattggaagattaaacaccaaata-ttatactttaatctaatgttgtgtacatggaaaaaatagagtgt 28559172  T
Q  179 gg--gtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    ||  |||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||| ||||||||||    
T  28559173 ggaggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatatttgataatga 28559250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 87 - 254
Target Start/End: Complemental strand, 26780234 - 26780066
Alignment:
Q  87 cattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatgggt--cc 184  Q
    ||||||||| || ||||||||||||||  |||||||||||  || |||||||||| | || |||| || | |||||||||||  |||||| |||||  ||    
T  26780234 cattgatgtaatgttggaagaaaaattaaaagattaaacactaagtaattatactctaatttaatgttgtgtgaattgaaaac-tagagtgtgggtgtcc 26780136  T
Q  185 cacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    |||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||    
T  26780135 cacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatacttgataatga 26780066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 82 - 254
Target Start/End: Original strand, 28564258 - 28564429
Alignment:
Q  82 tggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatggg 181  Q
    ||||||||| || | || ||||||||||||||||||||||||||| ||| || |||||||||||| |||| || | |  ||||||||||||| ||   ||    
T  28564258 tggaacattcatataatgttggaagaaaaattggaagattaaacaccaaata-ttatactttgatctaatgttgtgtacattgaaaaaatagtgtggagg 28564356  T
Q  182 tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    | ||||||||||| ||||||||||||||| | ||||||||||  |||||||||||||||||| ||||||||||    
T  28564357 ttccacataaaatagaacacacacattagtagtgtttaaattacggtatttaattttaaatatttgataatga 28564429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 94 - 254
Target Start/End: Original strand, 18875357 - 18875519
Alignment:
Q  94 gtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat--gggtcccacataa 191  Q
    ||||| ||||||||||||||||||||||||| |   | |||||| | |||||| |||| || | |||||||||||||||| || |  ||||||||||||     
T  18875357 gtgatgttggaagaaaaattggaagattaaatactgagtaattaaattttgatctaatgttgtgtgaattgaaaaaatagtgtgtaggggtcccacatac 18875456  T
Q  192 aatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    ||| ||||||||| ||||| | ||||||||||| |||||||||||||||||||||||||||||    
T  18875457 aatagaacacacatattagtagtgtttaaattgcggtatttaattttaaatacttgataatga 18875519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 158 - 254
Target Start/End: Complemental strand, 33417590 - 33417492
Alignment:
Q  158 tgaattgaaaaaatagagt--atgggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    |||||||||||||||||||  ||||||| |||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||    
T  33417590 tgaattgaaaaaatagagtgtatgggtctcacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatga 33417492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 79 - 238
Target Start/End: Complemental strand, 7002783 - 7002623
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    ||||||||||||| |||||  ||  ||||||| ||| ||||||||||| ||| |||||| |||||||| || |||| | ||||||||||||||||||| |    
T  7002783 tgttggaacattggtgtgaagtttaaagaaaa-ttgaaagattaaacaccaagtaattagactttgatctagtattgtgtgaattgaaaaaatagagtgt 7002685  T
Q  179 ggg--tcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaatttt 238  Q
    |||  || |||||||||| ||| ||| ||||||| | ||||||||||| |||||||||||||    
T  7002684 ggggatctcacataaaatagaatacatacattagtagtgtttaaattgtggtatttaatttt 7002623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 229
Target Start/End: Complemental strand, 17021348 - 17021243
Alignment:
Q  125 catcaactaattatactttgatataatattatctgaattgaaaaaatagagtatggg-tcccacataaaatggaacacacacattagcaatgtttaaatt 223  Q
    |||||| ||||||||||||||| |||| || | ||||||||||||||||||| |||| ||||||||||||| ||||||||||||||| | ||||||||||    
T  17021348 catcaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtggggtcccacataaaatagaacacacacattagtagtgtttaaatt 17021249  T
Q  224 gaggta 229  Q
    | ||||    
T  17021248 gcggta 17021243  T

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Target: chr8; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 229
Target Start/End: Complemental strand, 17551785 - 17551680
Alignment:
Q  125 catcaactaattatactttgatataatattatctgaattgaaaaaatagagtatggg-tcccacataaaatggaacacacacattagcaatgtttaaatt 223  Q
    |||||| ||||||||||||||| |||| || | ||||||||||||||||||| |||| ||||||||||||| ||||||||||||||| | ||||||||||    
T  17551785 catcaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtggggtcccacataaaatagaacacacacattagtagtgtttaaatt 17551686  T
Q  224 gaggta 229  Q
    | ||||    
T  17551685 gcggta 17551680  T

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Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 33417651 - 33417603
Alignment:
Q  78 ctgttggaacattgatgtgatcttggaagaaaaattggaagattaaaca 126  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  33417651 ctgttggaacattgatgtgatgttggatgaaaaattggaagattaaaca 33417603  T

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Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 254
Target Start/End: Original strand, 23547568 - 23547738
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    ||||||||||||| | | || ||| ||||||||||| ||||||||||||  | |||||||| ||| || |||| ||   ||||| ||||||||||| |||    
T  23547568 tgttggaacattggtttaatgttgaaagaaaaattgaaagattaaacattgaataattatattttaatctaatgttgcatgaatcgaaaaaatagaatat 23547667  T
Q  179 --gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
      ||||| |||||||| | ||||||| |  |||      ||||||||| |||||||||||||||||||||||||||||    
T  23547668 cggggtctcacataaattagaacacata--ttaa-----tttaaattgcggtatttaattttaaatacttgataatga 23547738  T

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Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 19168710 - 19168665
Alignment:
Q  279 tattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    ||||||||||||||  ||||||||||||||||||||||||| ||||    
T  19168710 tattatttttattctagaatatcacttcccataaatttagcttatg 19168665  T

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Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 22714149 - 22714194
Alignment:
Q  279 tattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
    |||||||||||||| || ||||||||||||||||||||||| ||||    
T  22714149 tattatttttattcatggatatcacttcccataaatttagcttatg 22714194  T

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Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 17027226 - 17027165
Alignment:
Q  78 ctgttggaacattgatgtgatcttggaag-aaaaattggaagattaaacatcaactaattata 139  Q
    ||||||||||||| ||||||| ||||| | |||||||||||||||||||| ||| ||||||||    
T  17027226 ctgttggaacattaatgtgatgttggatgaaaaaattggaagattaaacaccaa-taattata 17027165  T

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Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 17557718 - 17557657
Alignment:
Q  78 ctgttggaacattgatgtgatcttggaag-aaaaattggaagattaaacatcaactaattata 139  Q
    ||||||||||||| ||||||| ||||| | |||||||||||||||||||| ||| ||||||||    
T  17557718 ctgttggaacattaatgtgatgttggatgaaaaaattggaagattaaacaccaa-taattata 17557657  T

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Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 317
Target Start/End: Original strand, 44925072 - 44925110
Alignment:
Q  279 tattatttttattcgtgaatatcacttcccataaattta 317  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  44925072 tattatttttattcgagaatatcatttcccataaattta 44925110  T

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Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 242
Target Start/End: Original strand, 17953183 - 17953267
Alignment:
Q  158 tgaattgaaaaaatagagtat-gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaat 242  Q
    ||||||||||||||||||| | |||| ||||| ||||| |||||||||||| || | ||||| ||| | ||||||| |||||||||    
T  17953183 tgaattgaaaaaatagagtgtggggtaccacaaaaaatagaacacacacatcagtagtgttt-aatagtggtattttattttaaat 17953267  T

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Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 254
Target Start/End: Original strand, 24672364 - 24672453
Alignment:
Q  165 aaaaaatagagtatgggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
    ||||||||||||  |||||||| ||||||| || ||| || || |  | ||||||||||| | ||||||||| ||||||||| |||||||    
T  24672364 aaaaaatagagtgggggtcccaaataaaatagagcacgcagatcaatagtgtttaaattgtgatatttaattgtaaatacttaataatga 24672453  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 17027086 - 17027046
Alignment:
Q  279 tattatttttattcgtgaatatcacttcccataaatttagc 319  Q
    ||||||||||||||| |||||||||||  ||||||||||||    
T  17027086 tattatttttattcgagaatatcacttttcataaatttagc 17027046  T

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Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 17557578 - 17557538
Alignment:
Q  279 tattatttttattcgtgaatatcacttcccataaatttagc 319  Q
    ||||||||||||||| |||||||||||  ||||||||||||    
T  17557578 tattatttttattcgagaatatcacttttcataaatttagc 17557538  T

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Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 33100623 - 33100550
Alignment:
Q  180 ggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaatttt-aaatacttgataatga 254  Q
    ||||||||||||||| ||| |||||  |||  ||| |||||||||  |||||||||||| ||||||||||||||||    
T  33100623 ggtcccacataaaatagaatacaca--ttaataatctttaaattgcagtatttaatttttaaatacttgataatga 33100550  T

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Target: scaffold0002 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 79 - 250
Target Start/End: Complemental strand, 5203 - 5030
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||||||||||||||| ||||| ||||||||| ||||||||||| ||| | | ||||||||||| |||| || | ||||||||||||||||||| |    
T  5203 tgttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaagttaatatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 5104  T
Q  179 --gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgata 250  Q
      ||||||| |||||||| |||||| |||||||| | ||||||||||| |||||||||||||||||||||||||    
T  5103 gggggtcccgcataaaatagaacactcacattagtagtgtttaaattgtggtatttaattttaaatacttgata 5030  T

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Target: scaffold0002; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 79 - 254
Target Start/End: Original strand, 442897 - 443073
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    |||||||| |||  |||||| |||||| | ||||||||||||||||||| || ||||||||||||||| |||| || | ||||||||||||||||||| |    
T  442897 tgttggaatattactgtgatgttggaaaataaattggaagattaaacattaaataattatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 442996  T
Q  179 -gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatga 254  Q
     |||||||||||||||| |||||||||||||||    |||||||||| |||||||||||||||||| ||||||||||    
T  442997 ggggtcccacataaaatagaacacacacattagttgggtttaaattgtggtatttaattttaaatatttgataatga 443073  T

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Target: scaffold0690 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 79 - 324
Target Start/End: Complemental strand, 6372 - 6132
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaa-ttggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagta 177  Q
    ||||||||||||| || ||| |||||||||||| ||  || |||||||| ||| ||||||||||| ||| |||| |||| |||||||||||||||||||     
T  6372 tgttggaacattggtgcgatgttggaagaaaaaattataaaattaaacaccaagtaattatacttcgatctaatgttatgtgaattgaaaaaatagagtg 6273  T
Q  178 tgg--gtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattat 275  Q
    | |  ||||||||||| || ||| |||||||||||   ||||||||||| |||||||||||||||||||||||||||||        ||||||||||       
T  6272 ttgaggtcccacataagatagaatacacacattagtggtgtttaaattgtggtatttaattttaaatacttgataatga--taaaaataatagtaat--- 6178  T
Q  276 tactattatttttattcgtgaatatcacttcccataaatttagcctatg 324  Q
       ||||||||||||||||||||||||||||||||||||||||| ||||    
T  6177 ---tattatttttattcgtgaatatcacttcccataaatttagcttatg 6132  T

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Target: scaffold0240 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 79 - 318
Target Start/End: Complemental strand, 5108 - 4877
Alignment:
Q  79 tgttggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat 178  Q
    ||||||| ||||| |||||| ||||||||||||||| ||||||||||| ||  ||||||||||||||| |||| || | ||||||||||||||| ||| |    
T  5108 tgttggatcattggtgtgatgttggaagaaaaattgaaagattaaacaccacgtaattatactttgatctaatgttgtgtgaattgaaaaaatatagtgt 5009  T
Q  179 -gggtcccacataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattatta 277  Q
     |||| |||||||||||  |  ||||| |||||   ||||||| ||| |||||||||||||||||||||||||||||        ||||||||||         
T  5008 ggggtaccacataaaat--ataacacatattagttgtgtttaagttgcggtatttaattttaaatacttgataatga-taaaaaataatagtaat----- 4917  T
Q  278 ctattatttttattcgtgaatatcacttcccataaatttag 318  Q
     ||||||||||||||||||||||||||||||||||||||||    
T  4916 -tattatttttattcgtgaatatcacttcccataaatttag 4877  T

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Target: scaffold0057 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 82 - 319
Target Start/End: Complemental strand, 36257 - 36027
Alignment:
Q  82 tggaacattgatgtgatcttggaagaaaaattggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtatggg 181  Q
    |||||||||  |||||| ||| || | |||||| ||||||||||| ||| |||||||| |||||| |||| || | ||||||||||||||||||| ||||    
T  36257 tggaacattagtgtgatgttgaaaaataaattgaaagattaaacaccaaataattatattttgatctaatgttgtatgaattgaaaaaatagagtgtggg 36158  T
Q  182 tccc-acataaaatggaacacacacattagcaatgtttaaattgaggtatttaattttaaatacttgataatgagnnnnnnntaatagtaattattacta 280  Q
     ||| ||||||||| |||| ||| |||||| | |||||||| || |||||||||||||||||| ||||||||||        ||||||||||      ||    
T  36157 gccccacataaaatagaactcacgcattagtagtgtttaaactgcggtatttaattttaaatatttgataatga--taaaaataatagtaat------ta 36066  T
Q  281 ttatttttattcgtgaatatcacttcccataaatttagc 319  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  36065 ttatttttatttgtgaatatcacttcccataaatttagc 36027  T

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Target: scaffold0011 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 64885 - 65013
Alignment:
Q  112 ttggaagattaaacatcaactaattatactttgatataatattatctgaattgaaaaaatagagtat--gggtcccacataaaatggaacacacacatta 209  Q
    ||||||||||||||| ||| |||||| |||||||| || | || | |||||| |||||||||||| |  |||||||||||||||| ||||||||||||||    
T  64885 ttggaagattaaaca-caagtaattaaactttgatctagtgttgtgtgaattaaaaaaatagagtgtaggggtcccacataaaatagaacacacacatta 64983  T
Q  210 gcaatgtttaaattgaggtatttaatttta 239  Q
    | | | ||||||| | ||||||||| ||||    
T  64984 gtagtctttaaatagtggtatttaaattta 65013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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