View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14296_high_3 (Length: 525)
Name: NF14296_high_3
Description: NF14296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14296_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 30 - 491
Target Start/End: Original strand, 9147248 - 9147709
Alignment:
| Q |
30 |
tatgatgaagaagatggaggaagatcctaacttatgccagtctcatgccgactgcaagaagaaaggaagtggaagcttttgcgctcgtaatccaaacgca |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9147248 |
tatgatgaagaagatggaggaagatcctaacttatgccagtctcatgccgactgcaagaagaaaggaagtggaagcttttgcgctcgtaatccaaacaca |
9147347 |
T |
|
| Q |
130 |
gatattaaatatggctggtgttttctctctggatctcatgcacaaactgcattcaggaatgtccttaactctgaattcgaaaacctatccttgaagatgc |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9147348 |
gatattaaatatggctggtgttttctctctggatctcatgcacaaactgcattcaggaatgcccttaactctgaattcgaaaacctatccttgaagatgc |
9147447 |
T |
|
| Q |
230 |
ccacagaagtttccacttaatatgtccaacaaaaaccatccatgcatgatcatgcatctactacttaaataaaattgctccatttgtcttcctttccatt |
329 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9147448 |
cctcagaagtttccacttaatatgtccaacaaaaaccatccatgcatgatcatgcatctactacttaaataaaattgctccatttgtcttcctttccatt |
9147547 |
T |
|
| Q |
330 |
ttggtttggatttgaaaaacaatatattatatatgcatgtgtgtgggtataagtatgatattgttatgtaagaactttatgtatcgttaacaaataaaga |
429 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9147548 |
ttggtttggatttgaaaaacaatatattatatgtgcatgtgtgtgggtatatgtatgatattgttatgtaagaactttatgtatcgttaacaaataaaga |
9147647 |
T |
|
| Q |
430 |
gatttactctactaatagaattgcacatatttgcatatggtcctgagcctcttaatttgcgg |
491 |
Q |
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| T |
9147648 |
gatttactctactaatagaactacatatatttgcatatggtcctgcgcctcttaatttgcgg |
9147709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 273 - 488
Target Start/End: Original strand, 9141359 - 9141576
Alignment:
| Q |
273 |
gcatgatcatgcatctactacttaaataaaattgctc--catttgtcttcctttccattttggtttggatttgaaaaacaatatattatatatgcatgtg |
370 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| | |||||||| ||||||||||| |||||||||||||||||| |
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| T |
9141359 |
gcatgatcatgcatctactacttaaataaaattgctctccatctgtcttcctttccatctaggtttggaattgaaaaacaagatattatatatgcatgtg |
9141458 |
T |
|
| Q |
371 |
tgtgggtataagtatgatattgttatgtaagaactttatgtatcgttaacaaataaagagatttactctactaatagaattgcacatatttgcatatggt |
470 |
Q |
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| T |
9141459 |
tgtgggtatatgtgtgatattgttatgtaagaactttatgtattgttaataaataaagagatttcctctactaatagaactgcacatatttgcatatggt |
9141558 |
T |
|
| Q |
471 |
cctgagcctcttaatttg |
488 |
Q |
| |
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|||| ||||||| ||||| |
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| T |
9141559 |
cctgcgcctctttatttg |
9141576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 6803101 - 6803025
Alignment:
| Q |
46 |
gaggaagatcctaacttatgccagtctcatgccgactgcaagaagaaaggaagtggaagcttttgcgctcgtaatcc |
122 |
Q |
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|||||| ||||||||||||| ||||||||||| || |||| ||||||||||||||| || |||||||||||| |||| |
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| T |
6803101 |
gaggaacatcctaacttatgtcagtctcatgctgattgcacgaagaaaggaagtgggagtttttgcgctcgttatcc |
6803025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 153
Target Start/End: Original strand, 7947075 - 7947172
Alignment:
| Q |
56 |
ctaacttatgccagtctcatgccgactgcaagaagaaaggaagtggaagcttttgcgctcgtaatccaaacgcagatattaaatatggctggtgtttt |
153 |
Q |
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|||||||||| || |||||||| || |||| ||||||||||||||| |||||||| |||||| |||| || | ||||| |||||||| ||||||||| |
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| T |
7947075 |
ctaacttatgtcaatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttatcctaatcctgatatcaaatatggatggtgtttt |
7947172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 153
Target Start/End: Original strand, 7941524 - 7941621
Alignment:
| Q |
56 |
ctaacttatgccagtctcatgccgactgcaagaagaaaggaagtggaagcttttgcgctcgtaatccaaacgcagatattaaatatggctggtgtttt |
153 |
Q |
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|||||||||| || |||||||| || |||| ||||||||||||||| |||||||| |||||| |||| || | ||||| ||||||| ||||||||| |
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| T |
7941524 |
ctaacttatgtcaatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttatcctaatcctgatatcgaatatggatggtgtttt |
7941621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 7950483 - 7950547
Alignment:
| Q |
46 |
gaggaagatcctaacttatgccagtctcatgccgactgcaagaagaaaggaagtggaagcttttg |
110 |
Q |
| |
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|||||| ||||||||||||| |||||||| || || |||| |||||| | ||||||||||||||| |
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| T |
7950483 |
gaggaacatcctaacttatgtcagtctcacgctgattgcacgaagaaggaaagtggaagcttttg |
7950547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 117
Target Start/End: Original strand, 12110191 - 12110274
Alignment:
| Q |
34 |
atgaagaagatggaggaagatcctaacttatgccagtctcatgccgactgcaagaagaaaggaagtggaagcttttgcgctcgt |
117 |
Q |
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||||||| ||| |||||| ||||||||||||| || |||||||||| |||| ||||| |||||||| | |||||| |||||| |
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| T |
12110191 |
atgaagatgatcgaggaacatcctaacttatgtcaaactcatgccgagtgcatcaagaagggaagtgggaacttttgtgctcgt |
12110274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 153
Target Start/End: Original strand, 12123862 - 12123981
Alignment:
| Q |
34 |
atgaagaagatggaggaagatcctaacttatgccagtctcatgccgactgcaagaagaaaggaagtggaagcttttgcgctcgtaatccaaacgcagata |
133 |
Q |
| |
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||||||| ||| |||||| |||||||||||||||| ||||||| || ||| ||||| |||||||||| |||||| || ||| || | || || |||| |
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| T |
12123862 |
atgaagatgatcgaggaacatcctaacttatgccaaactcatgctgaatgcttcaagaagggaagtggaaacttttgtgcccgttatgctaatgctgata |
12123961 |
T |
|
| Q |
134 |
ttaaatatggctggtgtttt |
153 |
Q |
| |
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| ||||||| ||||||||| |
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| T |
12123962 |
tcgaatatggatggtgtttt |
12123981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 12128045 - 12128109
Alignment:
| Q |
53 |
atcctaacttatgccagtctcatgccgactgcaagaagaaaggaagtggaagcttttgcgctcgt |
117 |
Q |
| |
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||||||||||||| || |||||||||| |||| ||||| |||||||||| |||||| |||||| |
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| T |
12128045 |
atcctaacttatgtcaaactcatgccgagtgcatcaagaagggaagtggaaacttttgtgctcgt |
12128109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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