View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14296_high_4 (Length: 435)
Name: NF14296_high_4
Description: NF14296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14296_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 39779971 - 39779544
Alignment:
| Q |
1 |
tgagatggacat-catcaacagaaaaaatattgagaaggacattcacaatctctcttttaaaagttaatnnnnnnnngttgaaagacgtgatttagacgg |
99 |
Q |
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| T |
39779971 |
tgagatggacattcacaaacagaaaaaatattgagaaggacattcacaatct-tcttttaaaagctaataaaaaaaagttgaaagacgtgatttagacgg |
39779873 |
T |
|
| Q |
100 |
tgtttcaaactgagaaggacattcacaattttcttttgaatgcatggtaaatctcaaatttaccattcctttgagagaacagagtaattaatctataagt |
199 |
Q |
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| T |
39779872 |
tgtttcaaactgagaaggacattcacaattttcttttgaatgcatggtaaatctcaaatttaccattcctttgagagaacagagtaattaatctataagt |
39779773 |
T |
|
| Q |
200 |
gaacatgctagcgcaacttgttttatttcttgagttctaagtaatctaaagatgatagatagagatgaataaaagtaatgaatgctttgatcagaggcct |
299 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
39779772 |
gaacatgttagcgcaacttgttttatttcttgagttctaagtaatctaaagatgatcgatagagatgaataaaagtaatgaatgctttgatcagaggact |
39779673 |
T |
|
| Q |
300 |
atctgaccattgcccagtctcattaccatcgatgaggagaattgaggtcctagtcctcaatgtatgtggaaatattgggcggatcttctaggttataaga |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39779672 |
atctgaccattgcccagtctcattaccatcgatgaggagaattgaggtcgtcgtcctcaatgtatgttgaaatattgggcggatcttctaggttataaga |
39779573 |
T |
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| Q |
400 |
aatttgttcaaaaacaatggcactctcat |
428 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
39779572 |
aatttgttcaaaaacaatggcactctcat |
39779544 |
T |
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