View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14296_high_5 (Length: 402)
Name: NF14296_high_5
Description: NF14296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14296_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 9080763 - 9080961
Alignment:
| Q |
1 |
ttttatattattttctgacaaatcttaactcacaaagaatatgattttgtgtcattttttagcctcccaaacatatctatttataaagaatgtaatgtca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9080763 |
ttttatattattttctgacaaatcttaactcacaa-gaatatgattttgtgtcattttttagcctcccaaacatatctatttataaagaatgtaatgtca |
9080861 |
T |
|
| Q |
101 |
tttggtgaagaaatactttgtgtcattgactcacaagtcacaagaatctaatgttattttaaatatattttttgttaaaataacatttacattgaaatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9080862 |
tttggtgaagaaatactttgtgtcattgac-------tcacaagaatctaatgttattttaaatatattttttgttaaaataacatttacattgaaatat |
9080954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 254 - 385
Target Start/End: Original strand, 9081008 - 9081139
Alignment:
| Q |
254 |
gtaaacgcctagatccgaatagtcggctgttcagaaaacatatttgttttactctgtcttgaatctcaatatttaattggatatatcacaaagatctcga |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9081008 |
gtaaacgcctagatccgaatagtcggctgttcagaaaacatatttgttttactctgtcttgaatctcaatatttaattggatatatcacaaagatctcga |
9081107 |
T |
|
| Q |
354 |
ccgtaaattctaaattgaacggctcaaatcca |
385 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |
|
|
| T |
9081108 |
ccataaattctaaattgaacggctcaaatcca |
9081139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University