View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14296_high_8 (Length: 380)

Name: NF14296_high_8
Description: NF14296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14296_high_8
NF14296_high_8
[»] chr8 (11 HSPs)
chr8 (1-355)||(41842642-41842996)
chr8 (191-355)||(16913160-16913325)
chr8 (178-355)||(34893023-34893200)
chr8 (178-353)||(27853775-27853937)
chr8 (219-351)||(24255214-24255346)
chr8 (178-291)||(15096696-15096810)
chr8 (295-352)||(8628141-8628199)
chr8 (176-262)||(37063913-37063999)
chr8 (218-268)||(25629542-25629592)
chr8 (290-352)||(37063844-37063906)
chr8 (221-267)||(45261998-45262044)
[»] chr4 (18 HSPs)
chr4 (1-355)||(11653396-11653749)
chr4 (179-362)||(24539175-24539359)
chr4 (203-355)||(4875454-4875606)
chr4 (185-362)||(22455050-22455225)
chr4 (209-355)||(42351038-42351184)
chr4 (178-333)||(46420683-46420840)
chr4 (179-344)||(9061450-9061614)
chr4 (179-362)||(49357811-49357985)
chr4 (177-333)||(2527644-2527800)
chr4 (178-352)||(40682125-40682300)
chr4 (203-355)||(54243622-54243771)
chr4 (223-352)||(23633226-23633355)
chr4 (257-355)||(48809249-48809347)
chr4 (196-355)||(12758477-12758633)
chr4 (178-261)||(49748217-49748300)
chr4 (203-296)||(23633373-23633466)
chr4 (274-355)||(49750386-49750467)
chr4 (175-268)||(1326081-1326174)
[»] chr3 (15 HSPs)
chr3 (179-355)||(49067080-49067256)
chr3 (181-355)||(48314490-48314664)
chr3 (179-355)||(40823522-40823698)
chr3 (177-351)||(5557810-5557984)
chr3 (179-333)||(51657186-51657340)
chr3 (179-337)||(13495880-13496038)
chr3 (178-352)||(8235110-8235280)
chr3 (257-355)||(55370462-55370560)
chr3 (210-355)||(47756893-47757028)
chr3 (264-355)||(53926376-53926467)
chr3 (181-348)||(8113152-8113324)
chr3 (218-356)||(38362714-38362853)
chr3 (178-268)||(49453230-49453320)
chr3 (303-355)||(13495765-13495818)
chr3 (218-251)||(9764399-9764432)
[»] chr2 (15 HSPs)
chr2 (179-355)||(37995288-37995464)
chr2 (208-352)||(10128586-10128730)
chr2 (179-352)||(44240485-44240662)
chr2 (228-362)||(25236548-25236681)
chr2 (220-362)||(38329358-38329491)
chr2 (257-355)||(6686877-6686975)
chr2 (178-255)||(12008478-12008555)
chr2 (182-254)||(25882661-25882733)
chr2 (212-258)||(17069854-17069900)
chr2 (212-258)||(17075916-17075962)
chr2 (212-258)||(17096463-17096509)
chr2 (290-337)||(37073460-37073507)
chr2 (222-267)||(37073509-37073554)
chr2 (177-213)||(19822236-19822272)
chr2 (177-213)||(19842457-19842493)
[»] chr7 (19 HSPs)
chr7 (184-355)||(36159350-36159521)
chr7 (181-355)||(24396439-24396617)
chr7 (178-352)||(38029557-38029733)
chr7 (218-355)||(15237368-15237505)
chr7 (179-355)||(34405054-34405228)
chr7 (179-315)||(40462315-40462451)
chr7 (221-355)||(2732828-2732962)
chr7 (203-352)||(26455162-26455312)
chr7 (179-333)||(29322575-29322729)
chr7 (211-355)||(40107897-40108038)
chr7 (178-352)||(728938-729104)
chr7 (179-355)||(16718790-16718977)
chr7 (179-355)||(17693000-17693187)
chr7 (179-300)||(39703883-39704004)
chr7 (221-355)||(20077988-20078113)
chr7 (244-355)||(40241630-40241741)
chr7 (289-335)||(32201661-32201707)
chr7 (222-272)||(32201709-32201759)
chr7 (177-213)||(29956809-29956845)
[»] chr5 (16 HSPs)
chr5 (178-363)||(17413501-17413686)
chr5 (179-355)||(42691629-42691805)
chr5 (175-355)||(19121279-19121459)
chr5 (218-355)||(17546627-17546764)
chr5 (222-355)||(43622610-43622743)
chr5 (178-355)||(25480217-25480392)
chr5 (203-345)||(35392148-35392290)
chr5 (219-355)||(41040985-41041121)
chr5 (225-355)||(32719954-32720082)
chr5 (218-355)||(18241398-18241534)
chr5 (233-362)||(41290608-41290737)
chr5 (252-355)||(22740871-22740975)
chr5 (226-315)||(3891277-3891366)
chr5 (220-291)||(26161553-26161624)
chr5 (179-254)||(5399100-5399175)
chr5 (221-356)||(29379921-29380057)
[»] scaffold0891 (1 HSPs)
scaffold0891 (179-355)||(1259-1435)
[»] scaffold0090 (1 HSPs)
scaffold0090 (179-355)||(12588-12764)
[»] scaffold0044 (1 HSPs)
scaffold0044 (179-355)||(87748-87924)
[»] chr1 (11 HSPs)
chr1 (179-362)||(50290247-50290430)
chr1 (218-355)||(52407914-52408050)
chr1 (181-352)||(39268247-39268419)
chr1 (223-362)||(28946644-28946783)
chr1 (222-355)||(45914054-45914187)
chr1 (225-352)||(21007784-21007912)
chr1 (209-333)||(43991652-43991775)
chr1 (178-267)||(8998809-8998898)
chr1 (184-267)||(49193134-49193217)
chr1 (290-348)||(49193219-49193278)
chr1 (178-215)||(23085899-23085936)
[»] chr6 (4 HSPs)
chr6 (178-355)||(26898834-26899011)
chr6 (205-296)||(14365972-14366063)
chr6 (179-356)||(28078623-28078801)
chr6 (177-237)||(33004201-33004263)
[»] scaffold1155 (1 HSPs)
scaffold1155 (179-355)||(68-245)
[»] scaffold0642 (1 HSPs)
scaffold0642 (179-355)||(61-238)
[»] scaffold0345 (1 HSPs)
scaffold0345 (179-355)||(9972-10149)
[»] scaffold0105 (1 HSPs)
scaffold0105 (179-355)||(28831-29008)
[»] scaffold0246 (1 HSPs)
scaffold0246 (212-355)||(8829-8974)
[»] scaffold0210 (2 HSPs)
scaffold0210 (179-254)||(17760-17835)
scaffold0210 (179-254)||(25652-25727)
[»] scaffold0108 (1 HSPs)
scaffold0108 (179-268)||(13602-13690)
[»] scaffold1449 (1 HSPs)
scaffold1449 (212-258)||(170-216)


Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 41842642 - 41842996
Alignment:
Q  1 ctataacttacctagagagttatagaactagctaaacaaagaaaaaacttgatttagggattaaaatgagtgacagaatttagggatgaaaaattataga 100  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41842642 ctataacttacctaaagagttattgaactagctaaacaaagaaaaaacttgatttagggattaaaatgagtgacaaaatttagggatgaaaaattataga 41842741  T
Q  101 tgtttatgatctaggaggccaatttaggttcttaacatgtgccctaatgatttaagttagcatttcccttaactaataactagaccatcgacccgtgcta 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41842742 tgtttataatctaggaggccaatttaggttcttaacatgtgccctaatgatttaagttagcatttcctttaactaataactagaccatcgacccgtgcta 41842841  T
Q  201 atgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaa 300  Q
    |||||| ||||||||| || ||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41842842 atgcacaggtcatatggaaagtaatatctgacggtaataggtaacaaaatagtttagatgaatgtcatgattgtcatatagtatttcataatattaagaa 41842941  T
Q  301 gtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41842942 gtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 41842996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 191 - 355
Target Start/End: Original strand, 16913160 - 16913325
Alignment:
Q  191 acccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaa-caaaatagtttagatgaatgtcatgattatcatatagtatttcat 289  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| ||||| ||    
T  16913160 acccgtgctaacgcacgggtcatatggaaggtaatatttgacggtaatatgtaaacaaaatagtttagatgaaagtcatgattgtcatataatattttat 16913259  T
Q  290 aatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  16913260 aatattaagaagcatagacgttggtactgtaccataacataattttccatgacatcgtccttgata 16913325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 178 - 355
Target Start/End: Original strand, 34893023 - 34893200
Alignment:
Q  178 aactagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcat 277  Q
    ||||||||||| |||||||||||| ||||  |||||| | | |||||||||||||||||||| ||||||||| |||||| ||||||||||| ||| ||||    
T  34893023 aactagaccattgacccgtgctaacgcacaagtcataaggagggtaatatttgacggtaataggtaacaaaacagtttaaatgaatgtcataattgtcat 34893122  T
Q  278 atagtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34893123 atagtatttcataatattaagaagcatagacgttggtactgtaccataacataatttttcatgacatcgtccttgata 34893200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 178 - 353
Target Start/End: Original strand, 27853775 - 27853937
Alignment:
Q  178 aactagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcat 277  Q
    |||||||||||||||||||||||| |||||||||||||             ||| ||||||| ||||||||||||||||||||||||| |||||| ||||    
T  27853775 aactagaccatcgacccgtgctaacgcacgggtcatat-------------tgaaggtaataggtaacaaaatagtttagatgaatgttatgattgtcat 27853861  T
Q  278 atagtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttga 353  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| |||||||    
T  27853862 atagtatttcataatattaagaagcatagacgttggtactgtaccataacataattttccatgacatcatccttga 27853937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 219 - 351
Target Start/End: Complemental strand, 24255346 - 24255214
Alignment:
Q  219 aggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacgttggtattg 318  Q
    |||||| |||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||| ||    
T  24255346 aggtaacatttaacggtaataggtaacaaaatagtttagatgaatgtcatgattgtcatatagtatttcataatattaagaagcatagacattggtactg 24255247  T
Q  319 taccataacataatttttcatgacatcgtcctt 351  Q
    |||||||||||||||||  |||| |||||||||    
T  24255246 taccataacataattttatatgatatcgtcctt 24255214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 178 - 291
Target Start/End: Original strand, 15096696 - 15096810
Alignment:
Q  178 aactagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgt-aacaaaatagtttagatgaatgtcatgattatca 276  Q
    |||||||| ||||| ||  ||||| | |||||| ||||  |||||||||||||| ||||||| || || ||||||||||||||||||||||| ||| |||    
T  15096696 aactagactatcgaaccaagctaacgtacgggttatatcgaaggtaatatttgatggtaataggttaaaaaaatagtttagatgaatgtcataattgtca 15096795  T
Q  277 tatagtatttcataa 291  Q
     ||||||||||||||    
T  15096796 catagtatttcataa 15096810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 8628141 - 8628199
Alignment:
Q  295 taagaagtatagacgttggtattgtaccataacataat-ttttcatgacatcgtccttg 352  Q
    ||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  8628141 taagaagcatagacgttggtattgtaccataacataatatttccatgacatcgtccttg 8628199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 176 - 262
Target Start/End: Complemental strand, 37063999 - 37063913
Alignment:
Q  176 ataactagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaa 262  Q
    ||||||||||||| |||||||||    |||||||||||||  || ||||||||||||  ||||| ||||||||||||||||| ||||    
T  37063999 ataactagaccattgacccgtgcgttagcacgggtcatatcgaaagtaatatttgacaataataagtaacaaaatagtttagttgaa 37063913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 25629542 - 25629592
Alignment:
Q  218 aaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcat 268  Q
    ||||||||||||| || ||| ||||||||||||||||||| ||||||||||    
T  25629542 aaggtaatatttggcgctaacatgtaacaaaatagtttagttgaatgtcat 25629592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 352
Target Start/End: Complemental strand, 37063906 - 37063844
Alignment:
Q  290 aatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttg 352  Q
    |||||||| ||| ||| ||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  37063906 aatattaaaaagcatatacgttggtactgtaccataacatatatttccatgacatcgtccttg 37063844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 45261998 - 45262044
Alignment:
Q  221 gtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtca 267  Q
    |||||||||| |||||||| ||||||||||||||||| |||| ||||    
T  45261998 gtaatatttgtcggtaataggtaacaaaatagtttagctgaaggtca 45262044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 11653396 - 11653749
Alignment:
Q  1 ctataacttacctagagagttatagaactagctaaacaaagaaaaaacttgatttagggattaaaatgagtgacagaatttagggatgaaaaattataga 100  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||    
T  11653396 ctataacttacctagagagttatttaactagctaaacaaagaaaaaacttgaattagggattaaaatgagtgataaaatttagggatgaaaaattataga 11653495  T
Q  101 tgtttatgatctaggaggccaatttaggttcttaacatgtgccctaatgatttaagttagcatttcccttaactaataactagaccatcgacccgtgcta 200  Q
    ||||||  |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  11653496 tgtttaaaatctaggaggccaatttaggttcttaacatgttccctaataatttaagttagcatttcctttaactaataactagatcatcgacccgtgcta 11653595  T
Q  201 atgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaa 300  Q
    |||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||     
T  11653596 atgcacgggtcatatggaaggtaatatttgacggtaataggtaataaaatagtttagatgaatgtcatgattgtcatataatatttcataatattaagat 11653695  T
Q  301 gtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    | ||||||||||||| | ||||||||||||| ||| |||||||| ||||||||||    
T  11653696 gcatagacgttggtactataccataacataa-tttccatgacattgtccttgata 11653749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 179 - 362
Target Start/End: Complemental strand, 24539359 - 24539175
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcata 278  Q
    ||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||  |||||    
T  24539359 actagaccatcgaccagtgctaacgcacgggtcatatggaaggtaatatttgacggtaataggtaacaaaatagtttacatgaatgtcatgatcgtcata 24539260  T
Q  279 tagtatttcataatattaagaagtatagacgttggtattgtaccataacataat-ttttcatgacatcgtccttgatatcataac 362  Q
    ||||||||||||||||||||||| |||||| |||||| |||||||||||||||| ||| |||||||| |||||||||| ||||||    
T  24539259 tagtatttcataatattaagaagcatagactttggtactgtaccataacataatatttccatgacattgtccttgataccataac 24539175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 203 - 355
Target Start/End: Original strand, 4875454 - 4875606
Alignment:
Q  203 gcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagt 302  Q
    |||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||     
T  4875454 gcacgggtcatatggaaggtaatatttgacgttaataggtaacaaaatagtttagatgaatgtcatgattgtcatgtaatatttcataatattaagaagc 4875553  T
Q  303 atagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||| ||||||    
T  4875554 atagacgttggtactgtaccataacataattttccatgacatcgtcattgata 4875606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 185 - 362
Target Start/End: Complemental strand, 22455225 - 22455050
Alignment:
Q  185 ccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtat 284  Q
    ||||||||||||  ||| ||| |||||||||| |||||||||||||||||||||| |||| ||||||||||| ||||||||||| ||| |||||||||||    
T  22455225 ccatcgacccgt--taacgcatgggtcatatggaaggtaatatttgacggtaataagtaataaaatagtttaaatgaatgtcataattgtcatatagtat 22455128  T
Q  285 ttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgatatcataac 362  Q
    ||||||| ||||||||| ||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||| ||||    
T  22455127 ttcataacattaagaagcatagacgttggtactgtaccataacataattttccatgacaacgtccttgatatcgtaac 22455050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 209 - 355
Target Start/End: Complemental strand, 42351184 - 42351038
Alignment:
Q  209 gtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtatagac 308  Q
    |||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||| ||||||    
T  42351184 gtcatatggaaggtaatatttgacggtaatagataacaaaatagtttagatgaatgtcataactgtcatatagtatttcataatattaagaagcatagac 42351085  T
Q  309 gttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    ||||||| ||||| |||| ||||||||||||||||||||||||||||    
T  42351084 gttggtactgtactataaaataatttttcatgacatcgtccttgata 42351038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 178 - 333
Target Start/End: Complemental strand, 46420840 - 46420683
Alignment:
Q  178 aactagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtc--atgattatc 275  Q
    |||||||||||||| ||||||||||||||  |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||  || ||| ||    
T  46420840 aactagaccatcgatccgtgctaatgcacaagtcatatggaaggtaatatttgacggtaataggtaacaaaatagtttagatgaatgtcatataattgtc 46420741  T
Q  276 atatagtatttcataatattaagaagtatagacgttggtattgtaccataacataatt 333  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||    
T  46420740 atatagtatttcataatattaagaagcataaacgttgttattgtaccataacataatt 46420683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 179 - 344
Target Start/End: Complemental strand, 9061614 - 9061450
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcata 278  Q
    ||||||||||||||||||||||| |||  ||||||||| || ||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  9061614 actagaccatcgacccgtgctaacgcataggtcatatggaatgtaatatttaacggtaataggtaacaaaatagtttagatgaatgtcatgattgtcata 9061515  T
Q  279 tagtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacat 344  Q
    ||||||||||||||| ||||||| |||||||||| || | |||||||| |||||||| ||||||||    
T  9061514 tagtatttcataatactaagaagcatagacgttgttactataccataa-ataattttccatgacat 9061450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 179 - 362
Target Start/End: Complemental strand, 49357985 - 49357811
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcata 278  Q
    ||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||| |||| | | || |||||||||||||||||             
T  49357985 actagaccatcgacccgtgctaacgcactggtcatatggaaggtaatatttgacggtaataggtaaaatagtattttagatgaatgtcatgc-------- 49357894  T
Q  279 tagtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgatatcataac 362  Q
     |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||    
T  49357893 -agtatttcataatattaagaagcatagacgttggtactgtaccataacataattttccattacatcgtccttgatatcataac 49357811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 177 - 333
Target Start/End: Complemental strand, 2527800 - 2527644
Alignment:
Q  177 taactagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatca 276  Q
    ||||||||||||||| ||||||||| ||||  |||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| |||    
T  2527800 taactagaccatcgatccgtgctaacgcacatgtcatatggaaggtaatatttgacggtaatagataacaaaatagtttagatgaatgtcataattgtca 2527701  T
Q  277 tatagtatttcataatattaagaagtatagacgttggtattgtaccataacataatt 333  Q
    || | |||||||||||||||||||| ||||| ||||||| |||| ||||||||||||    
T  2527700 tacaatatttcataatattaagaagaatagatgttggtactgtatcataacataatt 2527644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 178 - 352
Target Start/End: Original strand, 40682125 - 40682300
Alignment:
Q  178 aactagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcat 277  Q
    ||||||| ||| ||||| |||||| ||||||| |||||  |||||||||||| |||| |||| ||||||||||||||||||||||||  |||||| | ||    
T  40682125 aactagatcattgacccatgctaacgcacgggacatatcgaaggtaatatttaacggcaataggtaacaaaatagtttagatgaatgctatgattgttat 40682224  T
Q  278 atagtatttcataatattaagaagtatagacgttggtattgtaccataacataat-ttttcatgacatcgtccttg 352  Q
    |||||||||||||||||||||||| ||||| ||||||| ||||||| |||||||| ||| ||||||||||||||||    
T  40682225 atagtatttcataatattaagaagcatagatgttggtactgtaccacaacataatatttccatgacatcgtccttg 40682300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 203 - 355
Target Start/End: Complemental strand, 54243771 - 54243622
Alignment:
Q  203 gcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagt 302  Q
    |||||||||||||| ||| |||||||||||| ||||| |||||||||||||||| || |||||||||||| | ||||||||||||||||||||||||||     
T  54243771 gcacgggtcatatggaagttaatatttgacgataataggtaacaaaatagtttaaataaatgtcatgattgttatatagtatttcataatattaagaagc 54243672  T
Q  303 atagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    ||||||||||||| |||||||||||   ||||| |||||||||||| ||||||    
T  54243671 atagacgttggtactgtaccataac---attttccatgacatcgtctttgata 54243622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 223 - 352
Target Start/End: Complemental strand, 23633355 - 23633226
Alignment:
Q  223 aatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacgttggtattgtacc 322  Q
    |||||||||||||| || |||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||  ||||||||||||| ||||||    
T  23633355 aatatttgacggta-taggtaacaaaatagtttaaataaatgtcatgattgtcatatagtatttcataatattaagaaccatagacgttggtactgtacc 23633257  T
Q  323 ataacataat-ttttcatgacatcgtccttg 352  Q
    |||||||||| ||| ||||||||||||||||    
T  23633256 ataacataatatttccatgacatcgtccttg 23633226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 257 - 355
Target Start/End: Complemental strand, 48809347 - 48809249
Alignment:
Q  257 gatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    ||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| |||||||||    
T  48809347 gatgaatttcatgattgtcatatagtatttcataatattaagaagcatagacgttggtactgtaccataacataattttccatgacatcatccttgata 48809249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 196 - 355
Target Start/End: Original strand, 12758477 - 12758633
Alignment:
Q  196 tgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatatt 295  Q
    |||||| | |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||       |||| | ||||||||||||||||||||    
T  12758477 tgctaacgtacgggtcatatggaaggtaatatttgacggtaataagtaacaaaatagtttagatga-------gattgtaatatagtatttcataatatt 12758569  T
Q  296 aagaagtatagacgttggtattgtac-----cataacataatttttcatgacatcgtccttgata 355  Q
    |||||  ||||||||||||| |||||     |||||||||||||| ||||||||| |||||||||    
T  12758570 aagaa-catagacgttggtactgtaccacaacataacataattttccatgacatcatccttgata 12758633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 49748217 - 49748300
Alignment:
Q  178 aactagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatga 261  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||    
T  49748217 aactagaccatcgacccgtgctaacgcacgggtcatatggaaggtaatatttgacggtaataggtagcaaaatagtttagatga 49748300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 203 - 296
Target Start/End: Original strand, 23633373 - 23633466
Alignment:
Q  203 gcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatatta 296  Q
    ||||||||||||   ||||||||||||||||||||||  ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  23633373 gcacgggtcataccgaaggtaatatttgacggtaatagataacaaaatagtttaaatgaatgtcatgattttcatatagtatttcataatatta 23633466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 274 - 355
Target Start/End: Original strand, 49750386 - 49750467
Alignment:
Q  274 tcatatagtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    |||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  49750386 tcatttagtatttcataatattaagaagaatagacgttgatattgtaccataacataattttccatgacatcgtccttgata 49750467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 1326174 - 1326081
Alignment:
Q  175 aataactagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcat 268  Q
    ||||| ||||||||||||||||||||  ||||| |||||||  ||||||||||||||| |||| ||||||||||||||||||| ||||||||||    
T  1326174 aataattagaccatcgacccgtgctatcgcacgcgtcatatcgaaggtaatatttgacagtaacatgtaacaaaatagtttagttgaatgtcat 1326081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 179 - 355
Target Start/End: Original strand, 49067080 - 49067256
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcata 278  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||     
T  49067080 actagaccatcgacccgtgctaacgcacgggtcatatggaaggtaatatttgacggtaataggtaacaaaatagtttagatgaatgtcatgattgtcatt 49067179  T
Q  279 tagtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    || |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  49067180 taatatttcataatattaagaagcatagacgttggtactgtaccataacataatttttcatgacatcgtccttgata 49067256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 181 - 355
Target Start/End: Complemental strand, 48314664 - 48314490
Alignment:
Q  181 tagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatata 280  Q
    |||| |||||||||||||||| | |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  48314664 tagatcatcgacccgtgctaacgtacgggtcatatggaaggtaatatttgacggtaataggtaacaaaatagtttagatgaatgtcatgattgtcatata 48314565  T
Q  281 gtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  48314564 gtatttcataatattaagaagcatagacgttggtactgtaccataacataattttccatgacatcgtccttgata 48314490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 179 - 355
Target Start/End: Complemental strand, 40823698 - 40823522
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcata 278  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||| |||| ||||||||||||||||||||||||||| |||||    
T  40823698 actagaccatcgacccgtgctaaggcacgggtcatatggaaggtaatatttgaccgtaataggtaaaaaaatagtttagatgaatgtcatgattgtcata 40823599  T
Q  279 tagtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    ||||||| ||||||||||||||| ||| | ||||||| |||||||||||||| |||| |||||||||||||||||||    
T  40823598 tagtattacataatattaagaagcataaatgttggtactgtaccataacatagttttccatgacatcgtccttgata 40823522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 177 - 351
Target Start/End: Complemental strand, 5557984 - 5557810
Alignment:
Q  177 taactagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatca 276  Q
    |||| ||||||| | |||||||||| |||| ||||||||| || ||||||||||| | ||||| ||||||||||| |||||||||||||||| ||| |||    
T  5557984 taacaagaccattggcccgtgctaacgcacaggtcatatggaatgtaatatttgatgataataggtaacaaaataatttagatgaatgtcataattttca 5557885  T
Q  277 tatagtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtcctt 351  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||    
T  5557884 tatagtatttcataatattaagaagcatagacgttgatattgtaccataacataattttccatgacatcgtcctt 5557810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 179 - 333
Target Start/End: Complemental strand, 51657340 - 51657186
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcata 278  Q
    ||||||||||||||||||||||| ||||  |||||||| |||||||||||||| ||||| | |||||||||||||||||||||||||||| ||| |||||    
T  51657340 actagaccatcgacccgtgctaacgcacatgtcatatggaaggtaatatttgagggtaacaagtaacaaaatagtttagatgaatgtcataattgtcata 51657241  T
Q  279 tagtatttcataatattaagaagtatagacgttggtattgtaccataacataatt 333  Q
    ||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||    
T  51657240 tagtatttcgtaatattaagaagtataaacgttggtcttgtaccataacataatt 51657186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 179 - 337
Target Start/End: Complemental strand, 13496038 - 13495880
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcata 278  Q
    ||||||||||||||||||||||| | | |||||||||  |||||||||||||||||||||| |||| ||||||||||||||||||||| ||||| |||||    
T  13496038 actagaccatcgacccgtgctaacgtaagggtcatatcgaaggtaatatttgacggtaataggtaataaaatagtttagatgaatgtcttgattgtcata 13495939  T
Q  279 tagtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttc 337  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||| |||||||||| ||||    
T  13495938 tagtatttcataatattaagaagcatagacgtttgtactgtacaataacataatatttc 13495880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 178 - 352
Target Start/End: Complemental strand, 8235280 - 8235110
Alignment:
Q  178 aactagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcat 277  Q
    |||||||||||||  | ||||||| ||||||||||||| |     ||||||||||| ||| | ||||||||||||||||||||||||||| |||| ||||    
T  8235280 aactagaccatcgttcagtgctaacgcacgggtcatatca-----aatatttgacgataacaggtaacaaaatagtttagatgaatgtcacgattgtcat 8235186  T
Q  278 atagtatttcataatattaagaagtatagacgttggtattgtaccataacataat-ttttcatgacatcgtccttg 352  Q
    |||||||||||||| | ||||||| ||||||||||||| |||||||||||||||| ||| ||||||||||||||||    
T  8235185 atagtatttcataacaataagaagcatagacgttggtactgtaccataacataatatttccatgacatcgtccttg 8235110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 257 - 355
Target Start/End: Complemental strand, 55370560 - 55370462
Alignment:
Q  257 gatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    ||||| ||| |||||| |||||||| ||||||||||||||||||| ||||||||||||| | ||||||||||||||||| |||||||||||||||||||    
T  55370560 gatgagtgttatgattgtcatatagcatttcataatattaagaagcatagacgttggtactataccataacataattttccatgacatcgtccttgata 55370462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 210 - 355
Target Start/End: Original strand, 47756893 - 47757028
Alignment:
Q  210 tcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacg 309  Q
    ||||||| ||||||||||||||  ||||||  |||||||||| ||||||||||||||||         ||| |||||||||||||||||||| ||||| |    
T  47756893 tcatatggaaggtaatatttgatagtaataactaacaaaata-tttagatgaatgtcat---------atattatttcataatattaagaagcatagatg 47756982  T
Q  310 ttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||    
T  47756983 ttggtactgtaccataacataattttccatgacatcgtccttgata 47757028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 264 - 355
Target Start/End: Original strand, 53926376 - 53926467
Alignment:
Q  264 gtcatgattatcatatagtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    ||||||||| ||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| || ||||||    
T  53926376 gtcatgattgtcatatagtattttataatattaagaagcatagacgttggtactgtaccataacataattttccatgacatcatctttgata 53926467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 348
Target Start/End: Original strand, 8113152 - 8113324
Alignment:
Q  181 tagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatat----gtaacaaaatagtttagatgaatgtcatgattatca 276  Q
    ||||||||||||  ||| ||||||| | |||||||  || |||||||||||  ||||||     |||| ||||||||||| ||||||||||||||| |||    
T  8113152 tagaccatcgacatgtgttaatgcatgagtcatatcgaatgtaatatttgattgtaataaataagtaataaaatagtttaaatgaatgtcatgattgtca 8113251  T
Q  277 tatagtatttcataatattaagaagtatagacgttggtattgtaccataacataat-ttttcatgacatcgtc 348  Q
    |||| |||||||| ||||||||||| | |||  |||||  |||| |||| |||||| ||| ||||||||||||    
T  8113252 tataatatttcatgatattaagaagcagagatattggtgctgtatcataccataatatttccatgacatcgtc 8113324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 218 - 356
Target Start/End: Complemental strand, 38362853 - 38362714
Alignment:
Q  218 aaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacgttggtatt 317  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||| ||| |  ||    | |||||||||||||  |  |||||| |||||| |    
T  38362853 aaggtaatatttgacggtaatatgtaataaaatagtttagttgaatgtcataattgttctaattaaattcataatattaattatcatagacattggtact 38362754  T
Q  318 gtaccataacataat-ttttcatgacatcgtccttgatat 356  Q
    |||||||| |||| | | | |||||||||| |||||||||    
T  38362753 gtaccatatcatagtatgtccatgacatcgaccttgatat 38362714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 49453230 - 49453320
Alignment:
Q  178 aactagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcat 268  Q
    |||||||||||||||| ||||||  || |||| |||||  |||||||||||| |  |||||||||| ||||||||||||| | ||||||||    
T  49453230 aactagaccatcgacctgtgctatcgcgcgggacatattgaaggtaatattttatagtaatatgtagcaaaatagtttagttaaatgtcat 49453320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 13495818 - 13495765
Alignment:
Q  303 atagacgttggtattgtaccataacataat-ttttcatgacatcgtccttgata 355  Q
    ||||||||||||| |||||||||||||||| ||| || ||||||||||||||||    
T  13495818 atagacgttggtactgtaccataacataatatttccacgacatcgtccttgata 13495765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 9764399 - 9764432
Alignment:
Q  218 aaggtaatatttgacggtaatatgtaacaaaata 251  Q
    |||||||||||||||||||||| |||||||||||    
T  9764399 aaggtaatatttgacggtaataggtaacaaaata 9764432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 179 - 355
Target Start/End: Complemental strand, 37995464 - 37995288
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcata 278  Q
    |||||||||||||||||||||||  ||||| ||||||| ||||||||||||||||||| || ||||||||||||||||||| |||||||||||| |||||    
T  37995464 actagaccatcgacccgtgctaacacacggatcatatggaaggtaatatttgacggtagtaggtaacaaaatagtttagataaatgtcatgattgtcata 37995365  T
Q  279 tagtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37995364 tagtatttcataatattaagaagcatagacgttggtattgtaccataacataattttccatgacatcgtccttgata 37995288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 208 - 352
Target Start/End: Original strand, 10128586 - 10128730
Alignment:
Q  208 ggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtataga 307  Q
    ||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |||||    
T  10128586 ggtcatatcgaaggtaatatttgacggtaataggtaacaaaatagtttagatgaatgtcatgattgtcatacaatatttcataatattaagaagcataga 10128685  T
Q  308 cgttggtattgtaccataacataat-ttttcatgacatcgtccttg 352  Q
    |||| |||||||||||||||||||| ||| |||||||| |||||||    
T  10128686 cgtt-gtattgtaccataacataatatttccatgacattgtccttg 10128730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 179 - 352
Target Start/End: Original strand, 44240485 - 44240662
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgta---acaaaatagtttagatgaatgtcatgattatc 275  Q
    |||| |||||||| |||| | || ||| | |||||||  ||||||||||||||||||||||| ||   |  ||||||||||||| |||||||||||| ||    
T  44240485 actataccatcgatccgtaccaacgcatgagtcatattgaaggtaatatttgacggtaatatataggtaataaatagtttagatcaatgtcatgattgtc 44240584  T
Q  276 atatagtatttcataatattaagaagtatagacgttggtattgtaccataacataat-ttttcatgacatcgtccttg 352  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  44240585 atatagtatttcataatattaagaagcatagacgttggtactgtaccataacataatattttcatgacatcgtccttg 44240662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 228 - 362
Target Start/End: Complemental strand, 25236681 - 25236548
Alignment:
Q  228 ttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacgttggtattgtaccataac 327  Q
    |||||||||||| |||||||| |||||||||| |||||||||||| ||||||| ||||| |||||||||||||| ||||||||||||| |||||||||||    
T  25236681 ttgacggtaataggtaacaaa-tagtttagataaatgtcatgattgtcatataatattttataatattaagaagcatagacgttggtactgtaccataac 25236583  T
Q  328 ataatttttcatgacatcgtccttgatatcataac 362  Q
    |||||||| ||||||||||||||||||||| ||||    
T  25236582 ataattttccatgacatcgtccttgatatcgtaac 25236548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 220 - 362
Target Start/End: Complemental strand, 38329491 - 38329358
Alignment:
Q  220 ggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacgttggtattgt 319  Q
    |||||||||||| ||||||| ||||||||||||||| ||||||||||||         |||||||||||||||||||||||| ||||||||||||| |||    
T  38329491 ggtaatatttgaaggtaataagtaacaaaatagtttggatgaatgtcat---------atagtatttcataatattaagaagcatagacgttggtactgt 38329401  T
Q  320 accataacataatttttcatgacatcgtccttgatatcataac 362  Q
    | |||||||||||||| ||||||||||||||||||||| ||||    
T  38329400 agcataacataattttccatgacatcgtccttgatatcgtaac 38329358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 257 - 355
Target Start/End: Complemental strand, 6686975 - 6686877
Alignment:
Q  257 gatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    ||||||| |||||||| ||||||| ||||||||| |||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  6686975 gatgaatttcatgattgtcatataatatttcatattattaaaaagcatagacgttggtactgtaccataacataattttccatgacatcgtccttgata 6686877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 12008478 - 12008555
Alignment:
Q  178 aactagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagttt 255  Q
    ||||||||||| ||||||||||||  ||||||||||||  ||||||||||||||| ||||||  ||||||||||||||    
T  12008478 aactagaccattgacccgtgctaacacacgggtcatatcgaaggtaatatttgacagtaatagataacaaaatagttt 12008555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 25882661 - 25882733
Alignment:
Q  182 agaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtt 254  Q
    |||||||| ||||||||||| ||||  |||||||  |||||||||||||||||||||| ||||||||||||||    
T  25882661 agaccatcaacccgtgctaacgcacatgtcatatcgaaggtaatatttgacggtaataggtaacaaaatagtt 25882733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 17069900 - 17069854
Alignment:
Q  212 atatgaaaggtaatatttgacggtaatatgtaacaaaatagtttaga 258  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||    
T  17069900 atatggaaggtaatatttgacggtaataggtaacaaaatagtttaga 17069854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 17075962 - 17075916
Alignment:
Q  212 atatgaaaggtaatatttgacggtaatatgtaacaaaatagtttaga 258  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||    
T  17075962 atatggaaggtaatatttgacggtaataggtaacaaaatagtttaga 17075916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 17096509 - 17096463
Alignment:
Q  212 atatgaaaggtaatatttgacggtaatatgtaacaaaatagtttaga 258  Q
    ||||| |||||||||||| ||||||||| ||||||||||||||||||    
T  17096509 atatggaaggtaatattttacggtaataggtaacaaaatagtttaga 17096463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 337
Target Start/End: Complemental strand, 37073507 - 37073460
Alignment:
Q  290 aatattaagaagtatagacgttggtattgtaccataacataatttttc 337  Q
    |||||||||||| ||| |||||||||| ||||||||||||||| ||||    
T  37073507 aatattaagaagcatatacgttggtatagtaccataacataatatttc 37073460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 37073554 - 37073509
Alignment:
Q  222 taatatttgacggtaatatgtaacaaaatagtttagatgaatgtca 267  Q
    ||||||||||| |||||| ||||||||||||||||| |||| ||||    
T  37073554 taatatttgacagtaataggtaacaaaatagtttagttgaaggtca 37073509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 19822272 - 19822236
Alignment:
Q  177 taactagaccatcgacccgtgctaatgcacgggtcat 213  Q
    |||||||||||| |||||||||||| |||||||||||    
T  19822272 taactagaccattgacccgtgctaacgcacgggtcat 19822236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 19842493 - 19842457
Alignment:
Q  177 taactagaccatcgacccgtgctaatgcacgggtcat 213  Q
    |||||||||||| |||||||||||| |||||||||||    
T  19842493 taactagaccattgacccgtgctaacgcacgggtcat 19842457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 7e-71; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 184 - 355
Target Start/End: Complemental strand, 36159521 - 36159350
Alignment:
Q  184 accatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagta 283  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||    
T  36159521 accatcgacccgtgctaacgcacgagtcatatgaaaggtaatatttgacggtaataggtaacaaaatagtttagatgaatgtcatgattgtcatataata 36159422  T
Q  284 tttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||  ||||||||||||||||||    
T  36159421 tttcataatattaagaagcatagacgttggtactgtaccataacataattttctatgacatcgtccttgata 36159350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 181 - 355
Target Start/End: Original strand, 24396439 - 24396617
Alignment:
Q  181 tagaccatcgacccgtgctaatgcacgggtcatat----gaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatca 276  Q
    ||||||||||| || || ||| |||||||||||||    | |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||    
T  24396439 tagaccatcgatccatgttaacgcacgggtcatatatatggaaggtaatatttgacggtaataggtaacaaaataatttagatgaatgtcatgattgtca 24396538  T
Q  277 tatagtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  24396539 tatagtatttcataatattaagaagcatagacgttgatattgtaccataacataattttccatgacatcgtccttgata 24396617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 178 - 352
Target Start/End: Complemental strand, 38029733 - 38029557
Alignment:
Q  178 aactagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcat 277  Q
    ||||||||||||||||||||||||  ||||| ||||||  |||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||    
T  38029733 aactagaccatcgacccgtgctaacacacggatcatattgaaggtaatatttgacggtaataggtaacaaaatagtttagatgaatgttatgattgtcat 38029634  T
Q  278 atagt-atttcataatattaagaagtatagacgttggtattgtaccataacataat-ttttcatgacatcgtccttg 352  Q
    ||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| ||||||||||||||||    
T  38029633 atagtaatttcataatattaagaagcatagacgttggtactgtaccataacataatatttccatgacatcgtccttg 38029557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 218 - 355
Target Start/End: Complemental strand, 15237505 - 15237368
Alignment:
Q  218 aaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacgttggtatt 317  Q
    ||||||||| |||||||||||| |||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  15237505 aaggtaataattgacggtaataggtaacaaaattgtttagatgaatgttatgattgtcatatagtatttcataatattaagaagtatagacgttggtact 15237406  T
Q  318 gtaccataacataatttttcatgacatcgtccttgata 355  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15237405 gtaccataacataatttttcatgacatcgtccttgata 15237368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 179 - 355
Target Start/End: Original strand, 34405054 - 34405228
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcata 278  Q
    |||||||||||||  |||||||| | |||||| ||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||    
T  34405054 actagaccatcgattcgtgctaacgtacgggtaatatggaaggtaatatttgacggtaataagtaacaaaatagtttaaatgaatgtcatgattgtcata 34405153  T
Q  279 tagtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||| |||||| |||||  ||||||||||||||||    
T  34405154 tagtatttcataatattaagaagcatagacgttggtactgtaccattacataacttttc--gacatcgtccttgata 34405228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 179 - 315
Target Start/End: Original strand, 40462315 - 40462451
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcata 278  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||  |||| |||||||||||||||||||||||||||||||||    
T  40462315 actagaccatcgacccgtgctaacgcacgggtcatatgaaaggtaatatttgatggtaattggtaataaaatagtttagatgaatgtcatgattatcata 40462414  T
Q  279 tagtatttcataatattaagaagtatagacgttggta 315  Q
    |||||||||||||||||||||| ||||||||||||||    
T  40462415 tagtatttcataatattaagaaatatagacgttggta 40462451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 221 - 355
Target Start/End: Original strand, 2732828 - 2732962
Alignment:
Q  221 gtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacgttggtattgta 320  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||| ||||||||||||    
T  2732828 gtaatatttgacggtaataggtaacaaaatagtttagatgaatgtcatgattgtcatataatatttcataatattaagaagcatagatgttggtattgta 2732927  T
Q  321 ccataacataatttttcatgacatcgtccttgata 355  Q
    |||||||||||||||  ||||||||||||||||||    
T  2732928 ccataacataattttcgatgacatcgtccttgata 2732962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 203 - 352
Target Start/End: Complemental strand, 26455312 - 26455162
Alignment:
Q  203 gcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagt 302  Q
    |||||||||||||  ||||||||||||||||||||||  |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  26455312 gcacgggtcatatcgaaggtaatatttgacggtaatagataacaaaatagtttagataaatgtcatgattgtcatatagtatttcataatattaagaagt 26455213  T
Q  303 atagacgttggtattgtaccataacataatttttc-atgacatcgtccttg 352  Q
    ||||||||||||| || ||||||||||||| |||| |||||||||||||||    
T  26455212 atagacgttggtactggaccataacataatatttctatgacatcgtccttg 26455162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 179 - 333
Target Start/End: Complemental strand, 29322729 - 29322575
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcata 278  Q
    |||| |||||| ||||||||||| |||| ||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| |||||    
T  29322729 actaaaccatctacccgtgctaacgcaccggtcatatggaaggtaatatttgacggtaatagataacaaaatagtttagatgaatgtcataattgtcata 29322630  T
Q  279 tagtatttcataatattaagaagtatagacgttggtattgtaccataacataatt 333  Q
    ||||||||||||| ||||||||| |||||||||| || |||||||||||||||||    
T  29322629 tagtatttcataacattaagaagcatagacgttgatactgtaccataacataatt 29322575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 211 - 355
Target Start/End: Complemental strand, 40108038 - 40107897
Alignment:
Q  211 catatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacgt 310  Q
    |||||| |||||||||||||||| ||||||||||||| ||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  40108038 catatggaaggtaatatttgacg-taatatgtaacaatat--tttagatgaatgtcatgattgtcatatagtatttcataatattaagaagcatagacgt 40107942  T
Q  311 tggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    ||||| ||||||||||||||||||| |||||| ||||| ||||||    
T  40107941 tggtactgtaccataacataattttccatgacttcgtctttgata 40107897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 178 - 352
Target Start/End: Complemental strand, 729104 - 728938
Alignment:
Q  178 aactagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcat 277  Q
    |||||||||||||||||||||||| | |||||||||||  |||||||||||||||||||||| ||||| ||||||||||||||||||         ||||    
T  729104 aactagaccatcgacccgtgctaacgtacgggtcatatcgaaggtaatatttgacggtaataggtaaccaaatagtttagatgaatg---------tcat 729014  T
Q  278 atagtatttcataatattaagaagtatagacgttggtattgtaccataacataat-ttttcatgacatcgtccttg 352  Q
    ||| |||||||||||||||||||| ||||||||||||| |||||||||||||||| ||  ||||||||||||||||    
T  729013 ataatatttcataatattaagaagcatagacgttggtactgtaccataacataatattcccatgacatcgtccttg 728938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 179 - 355
Target Start/End: Complemental strand, 16718977 - 16718790
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcata 278  Q
    ||||||||||||||||||||    |||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  16718977 actagaccatcgacccgtgcattagcacgggttatatggaaggtaatatttgacggtaataggtaacaaaatagtttagatgaatgtcatgattgtcata 16718878  T
Q  279 tag-------------tatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    |||             |||||||||||||||||||| ||||||||||||| |||||||||||  |||||| |||||||||||||||||||    
T  16718877 tagtattgtcatgtagtatttcataatattaagaagcatagacgttggtactgtaccataac--aattttccatgacatcgtccttgata 16718790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 179 - 355
Target Start/End: Complemental strand, 17693187 - 17693000
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcata 278  Q
    ||||||||||||||||||||    |||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  17693187 actagaccatcgacccgtgcattagcacgggttatatggaaggtaatatttgacggtaataggtaacaaaatagtttagatgaatgtcatgattgtcata 17693088  T
Q  279 tag-------------tatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    |||             |||||||||||||||||||| ||||||||||||| |||||||||||  |||||| |||||||||||||||||||    
T  17693087 tagtattgtcatgtagtatttcataatattaagaagcatagacgttggtactgtaccataac--aattttccatgacatcgtccttgata 17693000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 179 - 300
Target Start/End: Original strand, 39703883 - 39704004
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcata 278  Q
    ||||||||||||||||||||||| ||||||||||| |  ||||||| || ||||||||||| ||| |||||||||||||||||||||||||||| |||||    
T  39703883 actagaccatcgacccgtgctaacgcacgggtcatttcgaaggtaaaatatgacggtaataggtagcaaaatagtttagatgaatgtcatgattgtcata 39703982  T
Q  279 tagtatttcataatattaagaa 300  Q
    ||||||||||||||||||||||    
T  39703983 tagtatttcataatattaagaa 39704004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 221 - 355
Target Start/End: Complemental strand, 20078113 - 20077988
Alignment:
Q  221 gtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacgttggtattgta 320  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||         |||||||||||||||||||||||| ||||||||||||| || |    
T  20078113 gtaatatttgacggtaataggtaacaaaatagtttagatgaatgtcat---------atagtatttcataatattaagaagcatagacgttggtactgaa 20078023  T
Q  321 ccataacataatttttcatgacatcgtccttgata 355  Q
    ||||||||||||||| |||||||||||||||||||    
T  20078022 ccataacataattttccatgacatcgtccttgata 20077988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 244 - 355
Target Start/End: Complemental strand, 40241741 - 40241630
Alignment:
Q  244 acaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgaca 343  Q
    ||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||| ||| | ||||||   ||||||||| ||||||||  ||||||    
T  40241741 acaaaatagtttagatgaatgtcatgattgtcatattgtattttataatattaagaagcataaatgttggttcagtaccataatataattttctatgaca 40241642  T
Q  344 tcgtccttgata 355  Q
    ||||||||||||    
T  40241641 tcgtccttgata 40241630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 335
Target Start/End: Complemental strand, 32201707 - 32201661
Alignment:
Q  289 taatattaagaagtatagacgttggtattgtaccataacataatttt 335  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  32201707 taatattaagaagtatagacgttgatattgtaccataacataatttt 32201661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 32201759 - 32201709
Alignment:
Q  222 taatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgatt 272  Q
    ||||||||||||||||||  || ||||||| ||||||||||||||||||||    
T  32201759 taatatttgacggtaataaatagcaaaataatttagatgaatgtcatgatt 32201709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 29956845 - 29956809
Alignment:
Q  177 taactagaccatcgacccgtgctaatgcacgggtcat 213  Q
    |||||||||||| |||||||||||| |||||||||||    
T  29956845 taactagaccattgacccgtgctaacgcacgggtcat 29956809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 178 - 363
Target Start/End: Original strand, 17413501 - 17413686
Alignment:
Q  178 aactagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcat 277  Q
    ||||||||||||||||||||     |||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  17413501 aactagaccatcgacccgtgtgttagcacggatcatatggaaggtaatatttgacggtaataggtaacaaaatagtttagatgaatgtcatgattgtcat 17413600  T
Q  278 atagtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgatatcataact 363  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||    
T  17413601 atagtatttcataatattaagaagcatagacgttggtactgtaccataacataattttccatgacatcgtccttgataccataact 17413686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 179 - 355
Target Start/End: Original strand, 42691629 - 42691805
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcata 278  Q
    ||||||||||||||| ||||||| ||||| |||||||| |||||||||||||| ||| |||| ||||||||||||||||||||||||||||||| |||||    
T  42691629 actagaccatcgacctgtgctaacgcacgagtcatatggaaggtaatatttgatggtgatatctaacaaaatagtttagatgaatgtcatgattgtcata 42691728  T
Q  279 tagtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    ||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  42691729 tagtatttcataatattaagaaacatagacgttggtactgtaccataacataattttccatgacatcgtccttgata 42691805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 175 - 355
Target Start/End: Original strand, 19121279 - 19121459
Alignment:
Q  175 aataactagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattat 274  Q
    ||||||||||||||||||||||||||| |||| ||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||| || |    
T  19121279 aataactagaccatcgacccgtgctaacgcactggtcatatggaaggtaatatttcacggtaataggtaacaaaatagtttagatgaatgtcatgtttgt 19121378  T
Q  275 catatagtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    ||||||||||||||||||||||||||  ||| ||||||||| |||||||||| |||||||| ||||||||| |||||||||    
T  19121379 catatagtatttcataatattaagaaacataaacgttggtactgtaccataaaataattttccatgacatcatccttgata 19121459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 218 - 355
Target Start/End: Original strand, 17546627 - 17546764
Alignment:
Q  218 aaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacgttggtatt 317  Q
    ||||||||| |||||||||||| |||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  17546627 aaggtaataattgacggtaataggtaacaaaattgtttagatgaatgttatgattgtcatatagtatttcataatattaagaagtatagacgttggtact 17546726  T
Q  318 gtaccataacataatttttcatgacatcgtccttgata 355  Q
    ||||||||||||||||||||||||||||||||||||||    
T  17546727 gtaccataacataatttttcatgacatcgtccttgata 17546764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 222 - 355
Target Start/End: Complemental strand, 43622743 - 43622610
Alignment:
Q  222 taatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacgttggtattgtac 321  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| |    
T  43622743 taatatttgacggtaataggtaacaaaatagtttagatgaatgtcatgattgtcatatagtatttcataatattaagaagcatagacgttggtactgtcc 43622644  T
Q  322 cataacataatttttcatgacatcgtccttgata 355  Q
    |||||||||||||| |||||||||||||||||||    
T  43622643 cataacataattttccatgacatcgtccttgata 43622610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 178 - 355
Target Start/End: Original strand, 25480217 - 25480392
Alignment:
Q  178 aactagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcat 277  Q
    |||||||||||||| ||||||||| | | |||| || || ||||||||||||| |||||||| |||||||  ||||||||||||||||||||||| ||||    
T  25480217 aactagaccatcgatccgtgctaacgtatgggttatctggaaggtaatatttgtcggtaataggtaacaa--tagtttagatgaatgtcatgattgtcat 25480314  T
Q  278 atagtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    ||||||||||||| |||||||| | ||||||||||||| ||||||||||||||||||| || ||||||||||||||||    
T  25480315 atagtatttcatagtattaagaggcatagacgttggtactgtaccataacataattttccaggacatcgtccttgata 25480392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 203 - 345
Target Start/End: Original strand, 35392148 - 35392290
Alignment:
Q  203 gcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagt 302  Q
    |||||||| ||||| || ||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||     
T  35392148 gcacgggtgatatggaaagtaatatttgacggtaataggtaacaaaatagtttagatgaatatcatgattgtcatatagtattttataatattaagaagc 35392247  T
Q  303 atagacgttggtattgtaccataacataatttttcatgacatc 345  Q
    ||||||||||||| ||||||||||||||||||| |||||||||    
T  35392248 atagacgttggtactgtaccataacataattttccatgacatc 35392290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 219 - 355
Target Start/End: Original strand, 41040985 - 41041121
Alignment:
Q  219 aggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacgttggtattg 318  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||| | | || ||||||||||||||||||||||||| |||||| |||||||||    
T  41040985 aggtaatatttgacggtaataggtaacaaaatagtttaaatgaatgtcataactgtcgtatagtatttcataatattaagaagcatagacattggtattg 41041084  T
Q  319 taccataacataatttttcatgacatcgtccttgata 355  Q
    |||||||||||||||||  ||||||||||||||||||    
T  41041085 taccataacataattttctatgacatcgtccttgata 41041121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 225 - 355
Target Start/End: Complemental strand, 32720082 - 32719954
Alignment:
Q  225 tatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacgttggtattgtaccat 324  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||| ||||||||    
T  32720082 tatttgacggtaataggtaacaaaatagtttagatgaatgtcatgattgtcatagagtatttcataatattaagaagcatagacgttggtaatgtaccat 32719983  T
Q  325 aacataatttttcatgacatcgtccttgata 355  Q
    ||||||||||| |  ||||||||||||||||    
T  32719982 aacataattttcc--gacatcgtccttgata 32719954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 218 - 355
Target Start/End: Original strand, 18241398 - 18241534
Alignment:
Q  218 aaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacgttggtatt 317  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||||| |||||||||||||||||||  ||||||||||||| |    
T  18241398 aaggtaatatttgacggtaataggtaacaaaata-tttagatgaatgtcatgattgtgatataatatttcataatattaagaaacatagacgttggtact 18241496  T
Q  318 gtaccataacataatttttcatgacatcgtccttgata 355  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  18241497 gtaccataacataattttccatgacatcatccttgata 18241534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 233 - 362
Target Start/End: Complemental strand, 41290737 - 41290608
Alignment:
Q  233 ggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacgttggtattgtaccataacataat 332  Q
    |||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| ||| ||||||||    
T  41290737 ggtaatagataacaaaatagtttagatgaatgtcatgattgtcatatagtatttcataatattaagaagcatagacgttggtactgtcccacaacataat 41290638  T
Q  333 ttttcatgacatcgtccttgatatcataac 362  Q
    ||||||| ||||||||||||||||| ||||    
T  41290637 ttttcataacatcgtccttgatatcgtaac 41290608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 252 - 355
Target Start/End: Complemental strand, 22740975 - 22740871
Alignment:
Q  252 gtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacgttggtattgtaccataacataat-ttttcatgacatcgtcct 350  Q
    ||||||||||||||||||||| ||||||| ||||| |||||||||||||||||| | ||||||| |||| ||||||||||| ||| ||||||||| ||||    
T  22740975 gtttagatgaatgtcatgattgtcatatattattttataatattaagaagtataaatgttggtactgtatcataacataatatttccatgacatcatcct 22740876  T
Q  351 tgata 355  Q
    |||||    
T  22740875 tgata 22740871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 226 - 315
Target Start/End: Complemental strand, 3891366 - 3891277
Alignment:
Q  226 atttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacgttggta 315  Q
    |||||| ||||||| |||| |||||||||||||||||||| || ||| |||||||||||||| ||||||||||||| |||||||||||||    
T  3891366 atttgatggtaataagtaataaaatagtttagatgaatgttataattgtcatatagtatttcgtaatattaagaagcatagacgttggta 3891277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 26161624 - 26161553
Alignment:
Q  220 ggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataa 291  Q
    ||||||||||||||||||||  |||||||||| ||||||||||||| |||||| ||||||| ||||||||||    
T  26161624 ggtaatatttgacggtaataaataacaaaatattttagatgaatgttatgattgtcatataatatttcataa 26161553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 5399175 - 5399100
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtt 254  Q
    ||||||||||||| || | |||| ||||  |||||||  |||||||||||||||||||||| ||||||||||||||    
T  5399175 actagaccatcgatccatactaacgcacacgtcatatcgaaggtaatatttgacggtaataggtaacaaaatagtt 5399100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 356
Target Start/End: Complemental strand, 29380057 - 29379921
Alignment:
Q  221 gtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacgttggtattgta 320  Q
    |||||||||| | |||| ||||||||||||||||||| |||||||||| ||| |  ||    | |||||||||||||  |  |||||| |||||| ||||    
T  29380057 gtaatatttggcagtaacatgtaacaaaatagtttagttgaatgtcataattgttctaattaaattcataatattaattatcatagacattggtactgta 29379958  T
Q  321 ccataacataat-ttttcatgacatcgtccttgatat 356  Q
    ||||| |||| | | | |||||||||| |||||||||    
T  29379957 ccatatcatattatgtccatgacatcgaccttgatat 29379921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0891 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: scaffold0891
Description:

Target: scaffold0891; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 179 - 355
Target Start/End: Original strand, 1259 - 1435
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcata 278  Q
    ||||||||||||| ||||||||| |||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||||||||| |||||    
T  1259 actagaccatcgatccgtgctaacgcacgggtcatatggaaggtaatatttgacagtaatagataacaaaatagtttagatgaatgtcatgattgtcata 1358  T
Q  279 tagtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  1359 tagtatttcataatattaagaagcatagatgttggtactgtaccataacataattttccatgacatcgtccttgata 1435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 179 - 355
Target Start/End: Original strand, 12588 - 12764
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcata 278  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| ||||||| ||||||| |||||    
T  12588 actagaccatcgacccgtgctaatgcacgggtcatatggaatgtaatatttgacggtaataggtaacaaaatagtttaaatgaatgacatgattgtcata 12687  T
Q  279 tagtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    ||||||||||||||||||| ||| ||||||||||||| | ||||||||||||||||| |||||||||||||||||||    
T  12688 tagtatttcataatattaaaaaggatagacgttggtactataccataacataattttccatgacatcgtccttgata 12764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 179 - 355
Target Start/End: Complemental strand, 87924 - 87748
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcata 278  Q
    ||||||| ||||| || |||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  87924 actagactatcgatccttgctaacgcacgagtcatatgaaagataatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattgtcata 87825  T
Q  279 tagtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    |||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  87824 tagtatttcaaaatattaagaagcatagacgttggtactgtaccataacataattttccatgacatcgtccttgata 87748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 179 - 362
Target Start/End: Complemental strand, 50290430 - 50290247
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcata 278  Q
    ||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||| |||  ||||||||||||||||||||||||||| ||||     
T  50290430 actagaccatcgacccgtgctaacgcacgggtcatatggaacgtaatatttgacggtaataggtagaaaaatagtttagatgaatgtcatgattgtcatt 50290331  T
Q  279 tagtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgatatcataac 362  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||| ||||    
T  50290330 tagtatttcataatattcagaagcatagacgttggtattgtaccataacatgattttccatgacatcatccttgatatcgtaac 50290247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 218 - 355
Target Start/End: Original strand, 52407914 - 52408050
Alignment:
Q  218 aaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacgttggtatt 317  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| ||||||||| |    
T  52407914 aaggtaacatttgacggtaataggtaacaaaatagtttagatgaatgtcatgattg-catatagtatttcataatattaagaagcataaacgttggtaat 52408012  T
Q  318 gtaccataacataatttttcatgacatcgtccttgata 355  Q
    |||||||||||||||||| |||||||||||||||||||    
T  52408013 gtaccataacataattttccatgacatcgtccttgata 52408050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 181 - 352
Target Start/End: Original strand, 39268247 - 39268419
Alignment:
Q  181 tagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatata 280  Q
    ||||||||||||||| ||||| |||||||||||||  || ||||||||||||| ||||| |||||||| || |||||||||||||||| ||| |||||||    
T  39268247 tagaccatcgacccgcgctaacgcacgggtcatatcgaatgtaatatttgacgataataggtaacaaagtactttagatgaatgtcataattgtcatata 39268346  T
Q  281 gtatttcataatattaagaagtatagacgttggtattgtaccataacataat-ttttcatgacatcgtccttg 352  Q
    ||||||||||||||||||||  ||| |||||||||  ||||||||||||||| ||| ||||||||||||||||    
T  39268347 gtatttcataatattaagaaacataaacgttggtacggtaccataacataatatttccatgacatcgtccttg 39268419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 223 - 362
Target Start/End: Original strand, 28946644 - 28946783
Alignment:
Q  223 aatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacgttggtattgtacc 322  Q
    |||||||||||| |||| |||| |||||| |||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||| |||||     
T  28946644 aatatttgacggcaataggtaataaaataatttagatgaatgtcatgattgtcatataatatttcataatattaagaagcatagacgttggtactgtaca 28946743  T
Q  323 ataacataatttttcatgacatcgtccttgatatcataac 362  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  28946744 ataacataatttttcatgacattgtccttgatatcgtaac 28946783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 222 - 355
Target Start/End: Original strand, 45914054 - 45914187
Alignment:
Q  222 taatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacgttggtattgtac 321  Q
    |||||||||| ||||||| ||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  45914054 taatatttgatggtaataggtaacaaaatattttagataaatgttatgattatcatatagtatttcataatattaagaatcatagacgttggtattgtac 45914153  T
Q  322 cataacataatttttcatgacatcgtccttgata 355  Q
    |||||||||||||| | | |||||||||||||||    
T  45914154 cataacataattttccttaacatcgtccttgata 45914187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 225 - 352
Target Start/End: Original strand, 21007784 - 21007912
Alignment:
Q  225 tatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtatagacgttggtattgtaccat 324  Q
    ||||| ||||||||| |||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||| || |||||||     
T  21007784 tatttaacggtaataggtaataaaatagtttagatcaatgtcatgattgtcatatagtatttcataatattaagaagcatagacgttgatactgtaccac 21007883  T
Q  325 aacataat-ttttcatgacatcgtccttg 352  Q
    || ||||| ||| ||||||||||||||||    
T  21007884 aaaataatatttccatgacatcgtccttg 21007912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 209 - 333
Target Start/End: Complemental strand, 43991775 - 43991652
Alignment:
Q  209 gtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaagtatagac 308  Q
    |||||||| || ||||||||||||| ||||| |||||| ||||||| ||||||||||||| ||| | |||||||||||||||||||||||||| ||||||    
T  43991775 gtcatatggaatgtaatatttgacgataataagtaacagaatagtt-agatgaatgtcataattgttatatagtatttcataatattaagaagcatagac 43991677  T
Q  309 gttggtattgtaccataacataatt 333  Q
    |||||||  ||||||||||||||||    
T  43991676 gttggtaccgtaccataacataatt 43991652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 8998898 - 8998809
Alignment:
Q  178 aactagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtca 267  Q
    ||||||||||| |||||||||||| |||| ||||||||  || ||||||||||||||||||| ||||||||||||||||| |||| ||||    
T  8998898 aactagaccattgacccgtgctaacgcacaggtcatatcgaatgtaatatttgacggtaataggtaacaaaatagtttagttgaaggtca 8998809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 49193134 - 49193217
Alignment:
Q  184 accatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtca 267  Q
    ||||| || ||||||||| ||||| |||||||  || ||||||||||||||||||| ||||||||||| ||||| |||||||||    
T  49193134 accattgatccgtgctaacgcacgtgtcatattgaatgtaatatttgacggtaataggtaacaaaataatttagttgaatgtca 49193217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 49193219 - 49193278
Alignment:
Q  290 aatattaagaagtatagacgttggtattgtaccataacataat-ttttcatgacatcgtc 348  Q
    |||||||||||| ||| ||||||||| |||||||||||||||| ||| ||||||||||||    
T  49193219 aatattaagaagcatatacgttggtactgtaccataacataatatttccatgacatcgtc 49193278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 23085899 - 23085936
Alignment:
Q  178 aactagaccatcgacccgtgctaatgcacgggtcatat 215  Q
    |||||||||||||||||||||||| |||||||||||||    
T  23085899 aactagaccatcgacccgtgctaacgcacgggtcatat 23085936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 7e-65; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 178 - 355
Target Start/End: Original strand, 26898834 - 26899011
Alignment:
Q  178 aactagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcat 277  Q
    |||||||||||||||||||||||   ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  26898834 aactagaccatcgacccgtgctaccacacgggtcatatggaaggtaatatttgacggtaataggtaacaaaatagtttagatgaatgtcatgattgtcat 26898933  T
Q  278 atagtatttcataatattaagaagtatagacgttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    |||||||||||||||||||||||| |||| |||||||| |||||||||  || ||||| |||||||||||||||||||    
T  26898934 atagtatttcataatattaagaagcatagtcgttggtactgtaccatattatcattttccatgacatcgtccttgata 26899011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 205 - 296
Target Start/End: Original strand, 14365972 - 14366063
Alignment:
Q  205 acgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatatta 296  Q
    |||| ||||||  |||| ||||||||| |||||||   ||||||||||||||||| |||||||| ||| ||||||||||||| |||||||||    
T  14365972 acggatcatatcgaaggcaatatttgatggtaatagaaaacaaaatagtttagataaatgtcataattttcatatagtattttataatatta 14366063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 179 - 356
Target Start/End: Original strand, 28078623 - 28078801
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcata 278  Q
    ||||||||||||||||||| ||  |||||||||||||  ||||||||||||  | || | ||||||||||| ||||||  |||||||||| ||| |  ||    
T  28078623 actagaccatcgacccgtgatatcgcacgggtcatatcgaaggtaatatttagcagtgacatgtaacaaaagagtttaattgaatgtcataattgttcta 28078722  T
Q  279 tagtatttcataatattaagaagtatagacgttggtattgtaccataacataat-ttttcatgacatcgtccttgatat 356  Q
        | |||||||||||||  |  |||||| |||||| ||||||||| |||| | | | |||||||||| |||||||||    
T  28078723 attaaattcataatattaattatcatagacattggtactgtaccatatcatattatgtccatgacatcgaccttgatat 28078801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 33004201 - 33004263
Alignment:
Q  177 taactagaccatcgacccgtg--ctaatgcacgggtcatatgaaaggtaatatttgacggtaa 237  Q
    ||||||||||||||||| |||  |||| |||||||||||||| | ||||||||||||||||||    
T  33004201 taactagaccatcgacctgtgtgctaaagcacgggtcatatggatggtaatatttgacggtaa 33004263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 179 - 355
Target Start/End: Original strand, 68 - 245
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcata 278  Q
    |||||||||||||||  |||||| |||||||| ||||  ||||||||||| |||||||||| ||||| ||||||||||||||||||||| |||| |||||    
T  68 actagaccatcgaccgctgctaacgcacgggttatatcgaaggtaatattagacggtaataggtaactaaatagtttagatgaatgtcacgattgtcata 167  T
Q  279 tagtatttcataatattaagaagtatagacgttggtattgtaccataacataat-ttttcatgacatcgtccttgata 355  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  168 tagtatttcataatattaagaagcataaacgttggtattgtaccataacataatatttccatgacatcgtccttgata 245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 179 - 355
Target Start/End: Complemental strand, 238 - 61
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcata 278  Q
    |||||||||||||||  |||||| |||||||| ||||  ||||||||||| |||||||||| ||||| ||||||||||||||||||||| |||| |||||    
T  238 actagaccatcgaccgctgctaacgcacgggttatatcgaaggtaatattagacggtaataggtaactaaatagtttagatgaatgtcacgattgtcata 139  T
Q  279 tagtatttcataatattaagaagtatagacgttggtattgtaccataacataat-ttttcatgacatcgtccttgata 355  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  138 tagtatttcataatattaagaagcataaacgttggtattgtaccataacataatatttccatgacatcgtccttgata 61  T

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Target: scaffold0345 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 179 - 355
Target Start/End: Complemental strand, 10149 - 9972
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcata 278  Q
    |||||||||||||||  |||||| |||||||| ||||  ||||||||||| |||||||||| ||||| ||||||||||||||||||||| |||| |||||    
T  10149 actagaccatcgaccgctgctaacgcacgggttatatcgaaggtaatattagacggtaataggtaactaaatagtttagatgaatgtcacgattgtcata 10050  T
Q  279 tagtatttcataatattaagaagtatagacgttggtattgtaccataacataat-ttttcatgacatcgtccttgata 355  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  10049 tagtatttcataatattaagaagcataaacgttggtattgtaccataacataatatttccatgacatcgtccttgata 9972  T

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Target: scaffold0105 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 179 - 355
Target Start/End: Original strand, 28831 - 29008
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcata 278  Q
    |||||||||||||||  |||||| |||||||| ||||  ||||||||||| |||||||||| ||||| ||||||||||||||||||||| |||| |||||    
T  28831 actagaccatcgaccgctgctaacgcacgggttatatcgaaggtaatattagacggtaataggtaactaaatagtttagatgaatgtcacgattgtcata 28930  T
Q  279 tagtatttcataatattaagaagtatagacgttggtattgtaccataacataat-ttttcatgacatcgtccttgata 355  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  28931 tagtatttcataatattaagaagcataaacgttggtattgtaccataacataatatttccatgacatcgtccttgata 29008  T

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Target: scaffold0246 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 212 - 355
Target Start/End: Original strand, 8829 - 8974
Alignment:
Q  212 atatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattatcatatagtatttcataatattaagaag--tatagacg 309  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||| ||    
T  8829 atatggaaggtaatatttgacggtaataggtaacaaaatagtttagatgaatgtcatgattgtcatatagtatttcataatattaagaagcatataggcg 8928  T
Q  310 ttggtattgtaccataacataatttttcatgacatcgtccttgata 355  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||    
T  8929 ttggtactgtaccataacataattttccatgacatcgtccttgata 8974  T

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Target: scaffold0210 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 17835 - 17760
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtt 254  Q
    ||||||||||||||||||||||||||||| ||||| |  |||||||||||||||||||||||||||||||||||||    
T  17835 actagaccatcgacccgtgctaatgcacgagtcatttcgaaggtaatatttgacggtaatatgtaacaaaatagtt 17760  T

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Target: scaffold0210; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 25727 - 25652
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtt 254  Q
    ||||||||||||||||||||||||||||| ||||| |  |||||||||||||||||||||||||||||||||||||    
T  25727 actagaccatcgacccgtgctaatgcacgagtcatttcgaaggtaatatttgacggtaatatgtaacaaaatagtt 25652  T

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Target: scaffold0108 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 268
Target Start/End: Original strand, 13602 - 13690
Alignment:
Q  179 actagaccatcgacccgtgctaatgcacgggtcatatgaaaggtaatatttgacggtaatatgtaacaaaatagtttagatgaatgtcat 268  Q
    ||||||||||||||||||||||| |||| ||| ||||  ||| || ||||||| |||||||  |||||||||||||||||||| ||||||    
T  13602 actagaccatcgacccgtgctaacgcacaggttatatcgaagata-tatttgatggtaatagataacaaaatagtttagatgattgtcat 13690  T

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Target: scaffold1449 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold1449
Description:

Target: scaffold1449; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 216 - 170
Alignment:
Q  212 atatgaaaggtaatatttgacggtaatatgtaacaaaatagtttaga 258  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||    
T  216 atatggaaggtaatatttgacggtaataggtaacaaaatagtttaga 170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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