View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14296_low_10 (Length: 357)

Name: NF14296_low_10
Description: NF14296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14296_low_10
NF14296_low_10
[»] chr3 (12 HSPs)
chr3 (1-166)||(6073286-6073451)
chr3 (234-338)||(6069065-6069168)
chr3 (234-338)||(6113412-6113515)
chr3 (234-338)||(6120304-6120407)
chr3 (8-151)||(6080354-6080497)
chr3 (234-338)||(6091241-6091344)
chr3 (8-153)||(6068841-6068986)
chr3 (101-169)||(6113281-6113348)
chr3 (101-171)||(6120173-6120242)
chr3 (232-266)||(6073188-6073222)
chr3 (101-171)||(6091406-6091475)
chr3 (240-301)||(31290554-31290615)
[»] chr7 (1 HSPs)
chr7 (252-308)||(7235796-7235852)
[»] scaffold0003 (2 HSPs)
scaffold0003 (253-312)||(103083-103142)
scaffold0003 (253-287)||(108167-108201)
[»] chr5 (2 HSPs)
chr5 (250-301)||(29490052-29490103)
chr5 (252-289)||(26316083-26316120)
[»] chr4 (1 HSPs)
chr4 (234-290)||(16715414-16715470)


Alignment Details
Target: chr3 (Bit Score: 146; Significance: 7e-77; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 6073451 - 6073286
Alignment:
Q  1 gagatgatgattgtgcaaaaaatatgtgtccatcttatttggtcgtgaaatgtgtcagcggtatttgtaaatgtgttagaccgtagttcaaataaaaacc 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  6073451 gagatgatgattgtgcaaaaaatatgtgtccgtcttatttggtcgtgaagtgtgtcaacggtatttataaatgtgttagaccgtagttcaaataaaaacc 6073352  T
Q  101 taatcccaattgattttgtatgttgtgcaagaaccaagagagtacacaaaagtcctttaagaatat 166  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6073351 taatcccaagtgattttgtatgttgtgcaagaaccaagagagtacacaaaagtcctttaagaatat 6073286  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 234 - 338
Target Start/End: Original strand, 6069065 - 6069168
Alignment:
Q  234 agaaccttgtagtgaaggctttgtactctaagatgatgttaatgaaatgaaataaggtagaaaataatatcattaagattgtttttcttgtctcttaata 333  Q
    ||||||||||||| | | |||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||| || || ||||||||||||     
T  6069065 agaaccttgtagtaatgcctttgtactctaagatgatgttaatgaaatgaaataagatagcaaataatatctttaagatt-ttctttttgtctcttaatt 6069163  T
Q  334 ttaga 338  Q
    |||||    
T  6069164 ttaga 6069168  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 234 - 338
Target Start/End: Original strand, 6113412 - 6113515
Alignment:
Q  234 agaaccttgtagtgaaggctttgtactctaagatgatgttaatgaaatgaaataaggtagaaaataatatcattaagattgtttttcttgtctcttaata 333  Q
    ||||||||||||| | |||||||||||||||||||||| ||||||||| ||||||| |||  |||||||||||||||||||| ||| |||||| |||||     
T  6113412 agaaccttgtagtaatggctttgtactctaagatgatggtaatgaaatcaaataagatagtgaataatatcattaagattgtcttt-ttgtctattaatt 6113510  T
Q  334 ttaga 338  Q
    |||||    
T  6113511 ttaga 6113515  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 234 - 338
Target Start/End: Original strand, 6120304 - 6120407
Alignment:
Q  234 agaaccttgtagtgaaggctttgtactctaagatgatgttaatgaaatgaaataaggtagaaaataatatcattaagattgtttttcttgtctcttaata 333  Q
    ||||||||||||| | |||||||||||||||||||||| ||||||||| ||||||| |||  |||||||||||||||||| | ||| ||||||||||||     
T  6120304 agaaccttgtagtaatggctttgtactctaagatgatggtaatgaaatcaaataagatagtgaataatatcattaagattatcttt-ttgtctcttaatt 6120402  T
Q  334 ttaga 338  Q
    |||||    
T  6120403 ttaga 6120407  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 6080497 - 6080354
Alignment:
Q  8 tgattgtgcaaaaaatatgtgtccatcttatttggtcgtgaaatgtgtcagcggtatttgtaaatgtgttagaccgtagttcaaataaaaacctaatccc 107  Q
    ||||||| ||||||||||||||||||| |||||||||||||| ||| ||||  ||| |||||| |||||||||||   |||  ||  || || |||||||    
T  6080497 tgattgtccaaaaaatatgtgtccatcctatttggtcgtgaagtgtctcagaagtaattgtaagtgtgttagaccagggttgcaagtaagacttaatccc 6080398  T
Q  108 aattgattttgtatgttgtgcaagaaccaagagagtacacaaaa 151  Q
    |||||||||||||| | ||| ||||  ||||||||| |||||||    
T  6080397 aattgattttgtatttagtgaaagagtcaagagagtgcacaaaa 6080354  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 234 - 338
Target Start/End: Complemental strand, 6091344 - 6091241
Alignment:
Q  234 agaaccttgtagtgaaggctttgtactctaagatgatgttaatgaaatgaaataaggtagaaaataatatcattaagattgtttttcttgtctcttaata 333  Q
    ||||||||||||| | ||||||| |||||||||||||| |||||||||  |||||| ||| |||||||||||||| |||||| | | ||||||||||||     
T  6091344 agaaccttgtagtaatggctttggactctaagatgatggtaatgaaatcgaataagatagtaaataatatcattacgattgtctgt-ttgtctcttaatt 6091246  T
Q  334 ttaga 338  Q
    |||||    
T  6091245 ttaga 6091241  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 6068841 - 6068986
Alignment:
Q  8 tgattgtgcaaaaaatatgtgtccatcttatttggtcgtgaaatgtgtcagcggtatttgtaaatgtgttagaccgtagttcaaataaaaacctaatccc 107  Q
    ||||||| |||||  |||||| ||||||||||||| |||||| ||| || |  |  ||||||  |||| ||||||| ||||  ||  | ||| |||||||    
T  6068841 tgattgtccaaaatttatgtgcccatcttatttggccgtgaagtgtatcggaagactttgtaggtgtggtagaccggagttgcaagtagaacttaatccc 6068940  T
Q  108 aattgattttgtatgttgtgcaagaaccaagagagtacacaaaagt 153  Q
    || ||||||||||| | ||| |||||||||||||||| ||||||||    
T  6068941 aaatgattttgtatttagtgaaagaaccaagagagtaaacaaaagt 6068986  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 169
Target Start/End: Original strand, 6113281 - 6113348
Alignment:
Q  101 taatcccaattgattttgtatgttgtgcaagaaccaagagagtacacaaaagtcctttaagaatattac 169  Q
    ||||||||| ||||||||||| | ||| ||||||||||||| ||||||||||| |||| ||||||||||    
T  6113281 taatcccaagtgattttgtatttagtgaaagaaccaagagaatacacaaaagt-cttttagaatattac 6113348  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 6120173 - 6120242
Alignment:
Q  101 taatcccaattgattttgtatgttgtgcaagaaccaagagagtacacaaaagtcctttaagaatattacat 171  Q
    ||||||||| ||||||||||| |  || |||||||| |||||||||||||||| |||| ||||||||||||    
T  6120173 taatcccaagtgattttgtatttactgaaagaaccaggagagtacacaaaagt-cttttagaatattacat 6120242  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Complemental strand, 6073222 - 6073188
Alignment:
Q  232 ccagaaccttgtagtgaaggctttgtactctaaga 266  Q
    ||||||||||||| |||||||||||||||||||||    
T  6073222 ccagaaccttgtattgaaggctttgtactctaaga 6073188  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 6091475 - 6091406
Alignment:
Q  101 taatcccaattgattttgtatgttgtgcaagaaccaagagagtacacaaaagtcctttaagaatattacat 171  Q
    ||||||| | ||||||||||| | ||| ||||||||||| || |||||||||| |||| ||||||||||||    
T  6091475 taatccctagtgattttgtatttagtgaaagaaccaagacaggacacaaaagt-cttttagaatattacat 6091406  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 31290554 - 31290615
Alignment:
Q  240 ttgtagtgaaggctttgtactctaagatgatgttaatgaaatgaaataaggtagaaaataat 301  Q
    ||||||| | || ||| |||||||| || ||| |||||||||||||||||| ||||||||||    
T  31290554 ttgtagttatggttttatactctaatataatggtaatgaaatgaaataaggcagaaaataat 31290615  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 308
Target Start/End: Original strand, 7235796 - 7235852
Alignment:
Q  252 ctttgtactctaagatgatgttaatgaaatgaaataaggtagaaaataatatcatta 308  Q
    |||||||||||||||||||| ||||||||| |||||||| || ||||||||| ||||    
T  7235796 ctttgtactctaagatgatgataatgaaataaaataaggcagcaaataatattatta 7235852  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 103142 - 103083
Alignment:
Q  253 tttgtactctaagatgatgttaatgaaatgaaataaggtagaaaataatatcattaagat 312  Q
    ||||||||||||||||||| |||| ||||||||||||  | |||||||||| ||| ||||    
T  103142 tttgtactctaagatgatggtaatcaaatgaaataagaaataaaataatattatttagat 103083  T

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Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 287
Target Start/End: Complemental strand, 108201 - 108167
Alignment:
Q  253 tttgtactctaagatgatgttaatgaaatgaaata 287  Q
    ||||||||||||||||||| |||||||||||||||    
T  108201 tttgtactctaagatgatggtaatgaaatgaaata 108167  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 301
Target Start/End: Original strand, 29490052 - 29490103
Alignment:
Q  250 ggctttgtactctaagatgatgttaatgaaatgaaataaggtagaaaataat 301  Q
    |||||||||||||||||| ||| || ||||||||||||||| || |||||||    
T  29490052 ggctttgtactctaagattatgatattgaaatgaaataaggcagcaaataat 29490103  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Original strand, 26316083 - 26316120
Alignment:
Q  252 ctttgtactctaagatgatgttaatgaaatgaaataag 289  Q
    ||||||||||||||||| || |||||||||||||||||    
T  26316083 ctttgtactctaagatgttggtaatgaaatgaaataag 26316120  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 290
Target Start/End: Complemental strand, 16715470 - 16715414
Alignment:
Q  234 agaaccttgtagtgaaggctttgtactctaagatgatgttaatgaaatgaaataagg 290  Q
    ||||||||||| | | || |||||| | |||||||||| ||||||||||||||||||    
T  16715470 agaaccttgtatttatggatttgtattataagatgatggtaatgaaatgaaataagg 16715414  T

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