View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14296_low_12 (Length: 329)
Name: NF14296_low_12
Description: NF14296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14296_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 11816813 - 11816949
Alignment:
| Q |
163 |
aaaatttaattcatttaattactttcgattacattttaacttcatctaattattggtttagtttgacgactatcttctcatatagaaatttaaacagtta |
262 |
Q |
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| T |
11816813 |
aaaatttaattcatttaattactttcgattacattttaattttatctaattattggtttagtttgatgactatcttctcatacagaaatttaaacggtta |
11816912 |
T |
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| Q |
263 |
tcatgccaaacgcaacgattaatgcaagatagaaatg |
299 |
Q |
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| T |
11816913 |
tcatggcaaacgcaaaaatcaatgtaatatagaaatg |
11816949 |
T |
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Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 11815741 - 11815859
Alignment:
| Q |
53 |
ctgcttttgttataaaatttgtttcaaatgttatgaaatta--actcgaagtaatttatgttgtatttatttgatttgatttcaatttagactctaatta |
150 |
Q |
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| T |
11815741 |
ctgcttttgttataaaatttgtttcaaatgttatg-aattagtactcgaactaatttatgttgtatttatttgatttga-ttcaatttagactctaatta |
11815838 |
T |
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| Q |
151 |
gaaacaacaccaaaaatttaa |
171 |
Q |
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| T |
11815839 |
gatacaacaccaaaaatttaa |
11815859 |
T |
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