View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14296_low_13 (Length: 316)
Name: NF14296_low_13
Description: NF14296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14296_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 55257284 - 55257593
Alignment:
| Q |
1 |
gtaagtcataattgcggtgaatgcttccatctatagaattttcaattggtagaacagctttatccactaaccacaattcaactgcctacaggaagaatac |
100 |
Q |
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| T |
55257284 |
gtaagtcataattgcggtgaatgcttccatctatagaattttcaattggtagaacagctttatccaccaaccacaattcaactgcctacaggaagaatac |
55257383 |
T |
|
| Q |
101 |
aaatatgtcaatgcaacagttatactcacacattaaagcatcgggtggggagatgaggaaggcgaacatatcggaaccttaaatgcagcttcaaactcgt |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55257384 |
aaatatgtcaatgcaacagttatactcatacattaaagcatcgggtggggagatgaagaaggcgaacatatcggaaccttaaatgcagcttcaaactcgt |
55257483 |
T |
|
| Q |
201 |
cacaaggtacggtctcacattttggatatgctttcaaagctgcatcctcactatatgctcctggaagtccctgtatcgagcaattgactagttagcaaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55257484 |
cacaaggtacggtctcacattttggatatgctttcaaagccgcatcctcactatatgctcctggaagtccctgtatcgagcaattgactagttagcaaag |
55257583 |
T |
|
| Q |
301 |
gaaataatga |
310 |
Q |
| |
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|||||||||| |
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| T |
55257584 |
gaaataatga |
55257593 |
T |
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