View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14296_low_17 (Length: 237)
Name: NF14296_low_17
Description: NF14296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14296_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 21509831 - 21509619
Alignment:
| Q |
11 |
atgaatgagttggatcttggtttcgacttccaagggaacaatggtgaaaacagctagaagtgatgatcatttggaagaaaaatatcctgtgggtggtcca |
110 |
Q |
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| T |
21509831 |
atgaatgagttggatcttggtttcgacttccaagggaacaatggtgaaaacagctagaagtgatgatcatttagaagaaaaatatccagtgggtggtcca |
21509732 |
T |
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| Q |
111 |
ttaactaa-agtctttgaaagcataatatcagttggcatcctatatttgcatagatgtagttaattagtgagtcagaatcttgtatatagtcagtactta |
209 |
Q |
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| T |
21509731 |
tgaactaagagtctttgaaatcataatatcagttgggatcctatatttacatagatgtagttaattagtcagtcagaatcttgtatatagtcagtactta |
21509632 |
T |
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| Q |
210 |
gtactacttatct |
222 |
Q |
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| T |
21509631 |
gtactacttatct |
21509619 |
T |
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