View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14296_low_19 (Length: 229)
Name: NF14296_low_19
Description: NF14296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14296_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 49170976 - 49170782
Alignment:
| Q |
17 |
atactctttggcatgtggtcctttctttactatctgtaaacaacaaagttttagagacaaccaagcccttactatattcttgcgacacaaaccccttttc |
116 |
Q |
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| T |
49170976 |
atactctttggcatgtggtcctttctttactatctgcaaacaacaaagttttagagacaaccaagcccttattatattcttgcgacacaaaccccttttc |
49170877 |
T |
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| Q |
117 |
acaagtcaatcaagccactcctttcttctctttttaaaattcatggaagtctaaggtatactctatgtcctttttattttgtttacttccatact |
211 |
Q |
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| T |
49170876 |
ataagtcaatcaagccactcctttcttctctttttaaaattcatggaagtctaaggtatactctatgtcctttttattttgtttacttccatact |
49170782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 8421138 - 8421332
Alignment:
| Q |
17 |
atactctttggcatgtggtcctttctttactatctgtaaacaacaaagttttagagacaaccaagcccttactatattcttgcgacacaaaccccttttc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
8421138 |
atactctttggcatgtggtcctttctttactatctgcaaacaacaaagttttagagacaaccaagaccttactcaattcttgcgacacaaaccccttttc |
8421237 |
T |
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| Q |
117 |
acaagtcaatcaagccactcctttcttctctttttaaaattcatggaagtctaaggtatactctatgtcctttttattttgtttacttccatact |
211 |
Q |
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| T |
8421238 |
ataagtcaatcaagccactcctttcttctctttttaaaattcatggaagtctaaggtatactctatgtcctttttattttgtttacttccatact |
8421332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 43 - 201
Target Start/End: Complemental strand, 36732895 - 36732736
Alignment:
| Q |
43 |
ttactatctgtaaacaacaaagttttagagacaaccaagccc--ttactatattcttgcgacacaaaccccttttcacaagtcaatcaagccactccttt |
140 |
Q |
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||||||||| ||||||||||||| |||| ||||||| |||| ||||||||| ||||||||||| |||||| ||| ||||| |||||||||||| ||| |
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| T |
36732895 |
ttactatctacaaacaacaaagttctagaaacaaccatgcccctttactatatccttgcgacacag-ccccttatcataagtctatcaagccactcattt |
36732797 |
T |
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| Q |
141 |
cttctctttttaaaattcatggaagtctaaggtatactctatgtcctttttattttgttta |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36732796 |
cttctctttttaaaattcatggaagtctaaggtatactctatgtcctttttatttttttta |
36732736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 24422915 - 24422971
Alignment:
| Q |
153 |
aaattcatggaagtctaaggtatactctatgtcctttttattttgtttacttccata |
209 |
Q |
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|||||| ||| |||||||||||||||||||||||||| ||| ||| ||||| ||||| |
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| T |
24422915 |
aaattcttgggagtctaaggtatactctatgtcctttctatcttgcttactcccata |
24422971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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