View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14296_low_2 (Length: 590)
Name: NF14296_low_2
Description: NF14296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14296_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 108; Significance: 6e-54; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 13260084 - 13260231
Alignment:
| Q |
20 |
aaccttcaccgggatcaatgttctcttcattggcatggatctgcaaactttattctgaatcactcgcttgtgtccctggattacttagcatagtgggaga |
119 |
Q |
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| T |
13260084 |
aaccttcaccgggatcaatattctctttattggcatggatctgcaaactttcttccgaatcacttgctgatgtccctggactacttagcatagtgggaga |
13260183 |
T |
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| Q |
120 |
aaaatccattgttttctcttgatcatgataatcttgctcctgattaac |
167 |
Q |
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| T |
13260184 |
aaaatccatcgttttctcttgatcatgatcatcttgctcctgattaac |
13260231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 229 - 300
Target Start/End: Original strand, 13260970 - 13261041
Alignment:
| Q |
229 |
tcatccaaattttgaacttgttcaattgaacggccactggattctcttgg-agaaacatttaaggaattcaca |
300 |
Q |
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| T |
13260970 |
tcatccaaattttgaacttgttcaaccgaacggccactggattc-cttggaagaaacatctaaagaattcaca |
13261041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 13260895 - 13260955
Alignment:
| Q |
175 |
ttctcatcggtattttccacaccagttaatgcatcaaggcacattgcggcagattcatcca |
235 |
Q |
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| T |
13260895 |
ttctcgtcggtattttccacacatgtcgatgcatcaaggcacattgcagcaggttcgtcca |
13260955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 564
Target Start/End: Original strand, 13261703 - 13261823
Alignment:
| Q |
444 |
caccatattgtcatcttcactttgtgttgcaggatctaattcctgattttcttcatttttctctttatcgacattcgtttccatgctttcctccatgtta |
543 |
Q |
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| T |
13261703 |
caccatatttgcatcttcacttgatgatgcaaaatgcaattcttgattgtcttcatttttctcctttttgacactcacttgcatgctttcctgtacgtta |
13261802 |
T |
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| Q |
544 |
acgaatccaatatcatctcct |
564 |
Q |
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| T |
13261803 |
acggatccaatgtcatctcct |
13261823 |
T |
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